SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 7 significant domains in 7 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1e2rA   7.03e-133   0.0000000000000563   136-566   1qks A:136-567  
1gq1A   6.59e-133   0.0000000000000617   136-566   1qks A:136-567  
1hj5A   6.59e-133   0.0000000000000617   136-566   1qks A:136-567  
1hzuA   6.88e-128   0.0000000000000765   118-543   1nir A:118-543  
1hzvA   3.07e-127   0.0000000000000765   118-543   1nir A:118-543  
1nirA   1.32e-128   0.0000000000000708   118-543   1nir A:118-543  
1qksA   1.76e-133   0.0000000000000534   136-566   1qks A:136-567  
 
Weak hits:
1l0qA   5.12e-80   0.01   3-288   1qks A:136-567  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   28324 28324
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Oceanithermus profundus DSM 14977   1 1
No Yes Thermus scotoductus SA-01   1 1
No Yes Rhodothermus marinus DSM 4252   1 1
No Yes Sulfurihydrogenibium sp. YO3AOP1   1 1
No Yes Persephonella marina EX-H1   1 1
No Yes Hydrogenobaculum sp. Y04AAS1   1 1
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Candidatus Methylomirabilis oxyfera   1 1
No Yes Nitratifractor salsuginis DSM 16511   1 1
No Yes Sulfurimonas autotrophica DSM 16294   1 1
No Yes Sulfurimonas denitrificans DSM 1251   1 1
No Yes Nitratiruptor sp. SB155-2   1 1
No Yes Sulfurovum sp. NBC37-1   1 1
No Yes Dechloromonas aromatica RCB   3 3
No Yes Thauera sp. MZ1T   1 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Aromatoleum aromaticum EbN1   1 1
No Yes Dechlorosoma suillum PS   2 2
No Yes Pseudogulbenkiania sp. NH8B   2 2
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Ralstonia eutropha JMP134   2 2
No Yes Cupriavidus taiwanensis LMG 19424   2 2
No Yes Cupriavidus metallidurans CH34   2 2
No Yes Cupriavidus necator N-1   2 2
No Yes Ralstonia eutropha H16   2 2
No Yes Alicycliphilus denitrificans K601   2 2
No Yes Acidovorax ebreus TPSY   2 2
No Yes Acidovorax sp. JS42   2 2
No Yes Bordetella petrii DSM 12804   2 2
No Yes Thiobacillus denitrificans ATCC 25259   2 2
No Yes Sideroxydans lithotrophicus ES-1   1 1
No Yes Dinoroseobacter shibae DFL 12   2 2
No Yes Pseudovibrio sp. FO-BEG1   3 3
No Yes Ruegeria pomeroyi DSS-3   2 2
No Yes Roseobacter litoralis Och 149   2 2
No Yes Roseobacter denitrificans OCh 114   2 2
No Yes Paracoccus denitrificans PD1222   2 2
No Yes Magnetospirillum magneticum AMB-1   3 3
No Yes Polymorphum gilvum SL003B-26A1   2 2
No Yes Colwellia psychrerythraea 34H   2 2
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   2 2
No Yes Marinobacter aquaeolei VT8   2 2
No Yes Kangiella koreensis DSM 16069   1 1
No Yes Hahella chejuensis KCTC 2396   2 2
No Yes Methylomonas methanica MC09   1 1
No Yes gamma proteobacterium HdN1   2 2
No Yes Pseudomonas sp. TKP   2 2
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   2 2
No Yes Pseudomonas stutzeri A1501   2 2
No Yes Pseudomonas aeruginosa UCBPP-PA14   2 2
No Yes Natrinema sp. J7-2   2 2
No Yes Thermus oshimai JL-2   1 1
No Yes Thermus thermophilus JL-18   1 1
No Yes Thermus thermophilus SG0.5JP17-16   1 1
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Alicycliphilus denitrificans BC   2 2
No Yes Sulfuricella denitrificans skB26   3 3
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   2 2
No Yes Bradyrhizobium oligotrophicum S58   2 2
No Yes Thioalkalivibrio nitratireducens DSM 14787   2 2
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas stutzeri CCUG 29243   2 2
No Yes Pseudomonas stutzeri DSM 10701   2 2
No Yes Pseudomonas stutzeri DSM 4166   2 2
No Yes Pseudomonas stutzeri RCH2   2 2
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   2 2
No Yes Pseudomonas fluorescens F113   2 2
No Yes Pseudomonas aeruginosa SCV20265   2 2
No Yes Pseudomonas aeruginosa MTB-1   2 2
No Yes Pseudomonas aeruginosa LES431   2 2
No Yes Pseudomonas aeruginosa RP73   2 2
No Yes Pseudomonas aeruginosa B136-33   2 2
No Yes Pseudomonas aeruginosa PA1R   2 2
No Yes Pseudomonas aeruginosa PA1   2 2
No Yes Pseudomonas aeruginosa DK2   2 2
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   2 2
No Yes Pseudomonas aeruginosa LESB58   2 2
No Yes Pseudomonas aeruginosa PA7   2 2
No Yes Pseudomonas aeruginosa PAO1   2 2
No Yes Natrinema pellirubrum DSM 15624   2 2
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   2 2
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   8 8
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   10 10
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   5 5
No Yes NCBI 2017_08 genome   5916 5916
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   8 8
No Yes Sludge/US, Jazz Assembly (meta-genome)   5 5
No Yes Sludge/US, Phrap Assembly (meta-genome)   10 10
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   60 60
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   9 9
No Yes Uniprot 2018_03 genome   21835 21835
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   3 3
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   7 7
No Yes Protein Data Bank (all PDB sequenc)   44 44
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   128 128

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]