SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family domain assignments
in
all bacterial genomes

Assignment details

(show help)

25 selected genomes have 30 significant domains in 30 proteins.

Showing genomes 1 to 25 of 82
  1 2 3 4   Next Last

Anaerolinea thermophila UNI-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|320162172|ref|YP_004175397.1|   5.36e-113   0.000000000515   267-689   1qks A:136-567  
 
Weak hits:
gi|320161276|ref|YP_004174500.1|   2.35e-45   0.035   26-353   1qks A:136-567  

Roseiflexus castenholzii DSM 13941 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|156743369|ref|YP_001433498.1|   8.5e-111   0.000000000846   269-690   1nir A:118-543  
 
Weak hits:
gi|156740997|ref|YP_001431126.1|   0.0209   0.036   185-425   1qks A:136-567  
gi|156742734|ref|YP_001432863.1|   3.14e-18   0.028   872-1010,1044-1267   1nir A:118-543  
gi|156742834|ref|YP_001432963.1|   0.0115   0.065   9-85   1nir A:118-543  

Oceanithermus profundus DSM 14977 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|313681018|ref|YP_004058757.1|   2.49e-105   0.00000000251   114-538   1qks A:136-567  

Thermus scotoductus SA-01 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|320450825|ref|YP_004202921.1|   1.2e-95   0.00000000311   115-536   1nir A:118-543  

Rhodothermus marinus DSM 4252 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|268316219|ref|YP_003289938.1|   3.79e-108   0.00000000227   139-564   1qks A:136-567  

Sulfurihydrogenibium sp. YO3AOP1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|188996406|ref|YP_001930657.1|   9.02e-109   0.00000000135   116-553   1qks A:136-567  
 
Weak hits:
gi|188996402|ref|YP_001930653.1|   4.84e-28   0.01   18-350   1qks A:136-567  
gi|188996405|ref|YP_001930656.1|   5.75e-63   0.00031   120-466   1nir A:118-543  

Persephonella marina EX-H1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|225849865|ref|YP_002730099.1|   9.02e-107   0.0000000008   123-547   1qks A:136-567  
 
Weak hits:
gi|225849866|ref|YP_002730100.1|   4.97e-58   0.00031   126-466   1qks A:136-567  
gi|225849868|ref|YP_002730102.1|   7.59e-41   0.0052   7-351   1qks A:136-567  

Hydrogenobaculum sp. Y04AAS1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|195952717|ref|YP_002121007.1|   4.84e-103   0.00000000172   126-548   1nir A:118-543  
 
Weak hits:
gi|195952718|ref|YP_002121008.1|   7.59e-52   0.0008   104-462   1nir A:118-543  
gi|195952720|ref|YP_002121010.1|   2.09e-41   0.01   18-349   1qks A:136-567  
gi|195953084|ref|YP_002121374.1|   3.66e-25   0.015   112-359   1qks A:136-567  

Hydrogenobacter thermophilus TK-6 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|288817471|ref|YP_003431818.1|   1.2e-109   0.000000000843   127-551   1nir A:118-543  
 
Weak hits:
gi|288817467|ref|YP_003431814.1|   2.09e-47   0.0045   13-350   1qks A:136-567  
gi|288817470|ref|YP_003431817.1|   1.7e-45   0.0021   117-451   1qks A:136-567  
gi|288818331|ref|YP_003432679.1|   1.54e-16   0.028   61-488   1qks A:136-567  

Candidatus Methylomirabilis oxyfera has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|392375458|ref|YP_003207291.1|   1.31e-113   0.000000000512   125-545   1nir A:118-543  
 
Weak hits:
gi|392374694|ref|YP_003206527.1|   1.41e-41   0.0098   4-201   1qks A:136-567  
gi|392375456|ref|YP_003207289.1|   1.31e-66   0.0015   38-406   1qks A:136-567  

Nitratifractor salsuginis DSM 16511 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|319957294|ref|YP_004168557.1|   1.57e-61   0.0000164   110-465,507-559   1qks A:136-567  
 
Weak hits:
gi|319957347|ref|YP_004168610.1|   2.09e-34   0.02   11-363   1qks A:136-567  

Sulfurimonas autotrophica DSM 16294 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|307720760|ref|YP_003891900.1|   2.75e-63   0.000012   109-533   1nir A:118-543  
 
Weak hits:
gi|307719962|ref|YP_003891102.1|   0.00628   0.027   121-206   1nir A:118-543  
gi|307720757|ref|YP_003891897.1|   3.27e-32   0.014   18-349   1nir A:118-543  

Sulfurimonas denitrificans DSM 1251 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|78778179|ref|YP_394494.1|   7.72e-62   0.0000154   111-535   1qks A:136-567  
 
Weak hits:
gi|78778182|ref|YP_394497.1|   3.79e-31   0.013   34-372   1qks A:136-567  

Nitratiruptor sp. SB155-2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|152991534|ref|YP_001357256.1|   3.4e-106   0.00000000204   115-552   1nir A:118-543  
 
Weak hits:
gi|152991531|ref|YP_001357253.1|   1.19e-27   0.013   17-363   1nir A:118-543  
gi|152991533|ref|YP_001357255.1|   3.14e-63   0.00032   128-473   1qks A:136-567  

Sulfurovum sp. NBC37-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|152991841|ref|YP_001357562.1|   7.85e-62   0.0000215   122-469,509-566   1qks A:136-567  
 
Weak hits:
gi|152991845|ref|YP_001357566.1|   2.49e-35   0.013   12-360   1qks A:136-567  
gi|152992771|ref|YP_001358492.1|   0.00222   0.023   187-300   1qks A:136-567  

Dechloromonas aromatica RCB has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|71908873|ref|YP_286460.1|   6.54e-81   0.0000695   110-520   1nir A:118-543  
gi|71908887|ref|YP_286474.1|   4.32e-118   0.000000000146   132-561   1nir A:118-543  
gi|71908935|ref|YP_286522.1|   8.89e-126   0.00000000000899   151-576   1nir A:118-543  
 
Weak hits:
gi|71908883|ref|YP_286470.1|   1.44e-72   0.0025   9-385   1nir A:118-543  

Thauera sp. MZ1T has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|237653283|ref|YP_002889597.1|   1.27e-115   0.000000000104   129-560   1nir A:118-543  
 
Weak hits:
gi|237653142|ref|YP_002889456.1|   3.27e-21   0.015   75-209,246-315   1qks A:136-567  
gi|237653273|ref|YP_002889587.1|   4.05e-77   0.00013   126-540   1qks A:136-567  
gi|237653278|ref|YP_002889592.1|   1.31e-71   0.0048   15-398   1nir A:118-543  

Azoarcus sp. KH32C has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|470171923|ref|YP_007552809.1|   1.83e-123   0.00000000000636   150-576   1nir A:118-543  
 
Weak hits:
gi|470171915|ref|YP_007552801.1|   2.35e-75   0.00035   109-289,325-514   1qks A:136-567  
gi|470171920|ref|YP_007552806.1|   2.35e-75   0.0041   23-400   1nir A:118-543  
gi|470204084|ref|YP_007598183.1|   1.78e-61   0.014   29-320   1nir A:118-543  
gi|470204153|ref|YP_007598252.1|   2.22e-35   0.013   16-294   1qks A:136-567  

Aromatoleum aromaticum EbN1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|56475910|ref|YP_157499.1|   2.88e-125   0.00000000000536   152-578   1nir A:118-543  
 
Weak hits:
gi|56475901|ref|YP_157490.1|   1.27e-78   0.00031   122-527   1qks A:136-567  
gi|56475906|ref|YP_157495.1|   1.96e-73   0.0045   14-394   1qks A:136-567  

Dechlorosoma suillum PS has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|372488723|ref|YP_005028288.1|   1.23e-124   0.00000000000706   153-575   1nir A:118-543  
gi|372489925|ref|YP_005029490.1|   1.11e-111   0.0000000000739   116-546   1nir A:118-543  
 
Weak hits:
gi|372488579|ref|YP_005028144.1|   1.83e-71   0.003   25-393   1nir A:118-543  
gi|372489735|ref|YP_005029300.1|   7.19e-79   0.00014   121-301,337-525   1qks A:136-567  

Pseudogulbenkiania sp. NH8B has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|347539233|ref|YP_004846658.1|   1.57e-124   0.0000000000109   136-559   1nir A:118-543  
gi|347539242|ref|YP_004846667.1|   2.75e-78   0.0001   102-282,318-506   1nir A:118-543  
 
Weak hits:
gi|347539236|ref|YP_004846661.1|   7.85e-78   0.0007   6-367   1nir A:118-543  
gi|347539418|ref|YP_004846843.1|   3.14e-55   0.016   41-317   1nir A:118-543  

Candidatus Accumulibacter phosphatis clade IIA str. UW-1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|257094065|ref|YP_003167706.1|   1.83e-112   0.0000000000376   130-560   1nir A:118-543  
 
Weak hits:
gi|257091937|ref|YP_003165578.1|   4.19e-70   0.00019   135-291,327-521   1nir A:118-543  
gi|257094956|ref|YP_003168597.1|   5.75e-74   0.0022   22-382   1nir A:118-543  

Rubrivivax gelatinosus IL144 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|383756517|ref|YP_005435502.1|   5.49e-122   0.0000000000062   156-582   1nir A:118-543  
 
Weak hits:
gi|383756520|ref|YP_005435505.1|   1.7e-71   0.0041   18-392   1nir A:118-543  
gi|383756525|ref|YP_005435510.1|   3.53e-77   0.00011   115-525   1nir A:118-543  

Leptothrix cholodnii SP-6 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|171058126|ref|YP_001790475.1|   2.49e-118   0.0000000000079   147-573   1nir A:118-543  
 
Weak hits:
gi|171058128|ref|YP_001790477.1|   8.76e-73   0.0052   18-393   1nir A:118-543  
gi|171058134|ref|YP_001790483.1|   6.02e-73   0.00016   109-517   1nir A:118-543  
gi|171059307|ref|YP_001791656.1|   2.88e-38   0.0082   167-409   1nir A:118-543  
gi|171059789|ref|YP_001792138.1|   1.39e-62   0.01   8-292   1nir A:118-543  
gi|171059889|ref|YP_001792238.1|   1.7e-17   0.0094   63-198,243-356   1nir A:118-543  
gi|171060409|ref|YP_001792758.1|   1.78e-27   0.019   1178-1471   1qks A:136-567  
gi|171060562|ref|YP_001792911.1|   3.66e-49   0.0044   162-462   1qks A:136-567  

Ralstonia eutropha JMP134 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|73538835|ref|YP_299202.1|   6.41e-124   0.00000000000999   142-567   1nir A:118-543  
gi|73538843|ref|YP_299210.1|   2.22e-81   0.0000338   110-496   1qks A:136-567  
 
Weak hits:
gi|73538838|ref|YP_299205.1|   9.42e-71   0.0014   49-411   1nir A:118-543  

  1 2 3 4   Next Last
Showing genomes 1 to 25 of 82

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   28324 28324
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Oceanithermus profundus DSM 14977   1 1
No Yes Thermus scotoductus SA-01   1 1
No Yes Rhodothermus marinus DSM 4252   1 1
No Yes Sulfurihydrogenibium sp. YO3AOP1   1 1
No Yes Persephonella marina EX-H1   1 1
No Yes Hydrogenobaculum sp. Y04AAS1   1 1
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Candidatus Methylomirabilis oxyfera   1 1
No Yes Nitratifractor salsuginis DSM 16511   1 1
No Yes Sulfurimonas autotrophica DSM 16294   1 1
No Yes Sulfurimonas denitrificans DSM 1251   1 1
No Yes Nitratiruptor sp. SB155-2   1 1
No Yes Sulfurovum sp. NBC37-1   1 1
No Yes Dechloromonas aromatica RCB   3 3
No Yes Thauera sp. MZ1T   1 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Aromatoleum aromaticum EbN1   1 1
No Yes Dechlorosoma suillum PS   2 2
No Yes Pseudogulbenkiania sp. NH8B   2 2
No Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Ralstonia eutropha JMP134   2 2
No Yes Cupriavidus taiwanensis LMG 19424   2 2
No Yes Cupriavidus metallidurans CH34   2 2
No Yes Cupriavidus necator N-1   2 2
No Yes Ralstonia eutropha H16   2 2
No Yes Alicycliphilus denitrificans K601   2 2
No Yes Acidovorax ebreus TPSY   2 2
No Yes Acidovorax sp. JS42   2 2
No Yes Bordetella petrii DSM 12804   2 2
No Yes Thiobacillus denitrificans ATCC 25259   2 2
No Yes Sideroxydans lithotrophicus ES-1   1 1
No Yes Dinoroseobacter shibae DFL 12   2 2
No Yes Pseudovibrio sp. FO-BEG1   3 3
No Yes Ruegeria pomeroyi DSS-3   2 2
No Yes Roseobacter litoralis Och 149   2 2
No Yes Roseobacter denitrificans OCh 114   2 2
No Yes Paracoccus denitrificans PD1222   2 2
No Yes Magnetospirillum magneticum AMB-1   3 3
No Yes Polymorphum gilvum SL003B-26A1   2 2
No Yes Colwellia psychrerythraea 34H   2 2
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   2 2
No Yes Marinobacter aquaeolei VT8   2 2
No Yes Kangiella koreensis DSM 16069   1 1
No Yes Hahella chejuensis KCTC 2396   2 2
No Yes Methylomonas methanica MC09   1 1
No Yes gamma proteobacterium HdN1   2 2
No Yes Pseudomonas sp. TKP   2 2
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   2 2
No Yes Pseudomonas stutzeri A1501   2 2
No Yes Pseudomonas aeruginosa UCBPP-PA14   2 2
No Yes Natrinema sp. J7-2   2 2
No Yes Thermus oshimai JL-2   1 1
No Yes Thermus thermophilus JL-18   1 1
No Yes Thermus thermophilus SG0.5JP17-16   1 1
No Yes Hydrogenobacter thermophilus TK-6   1 1
No Yes Alicycliphilus denitrificans BC   2 2
No Yes Sulfuricella denitrificans skB26   3 3
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   2 2
No Yes Bradyrhizobium oligotrophicum S58   2 2
No Yes Thioalkalivibrio nitratireducens DSM 14787   2 2
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas stutzeri CCUG 29243   2 2
No Yes Pseudomonas stutzeri DSM 10701   2 2
No Yes Pseudomonas stutzeri DSM 4166   2 2
No Yes Pseudomonas stutzeri RCH2   2 2
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   2 2
No Yes Pseudomonas fluorescens F113   2 2
No Yes Pseudomonas aeruginosa SCV20265   2 2
No Yes Pseudomonas aeruginosa MTB-1   2 2
No Yes Pseudomonas aeruginosa LES431   2 2
No Yes Pseudomonas aeruginosa RP73   2 2
No Yes Pseudomonas aeruginosa B136-33   2 2
No Yes Pseudomonas aeruginosa PA1R   2 2
No Yes Pseudomonas aeruginosa PA1   2 2
No Yes Pseudomonas aeruginosa DK2   2 2
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   2 2
No Yes Pseudomonas aeruginosa LESB58   2 2
No Yes Pseudomonas aeruginosa PA7   2 2
No Yes Pseudomonas aeruginosa PAO1   2 2
No Yes Natrinema pellirubrum DSM 15624   2 2
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   2 2
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   8 8
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   10 10
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   5 5
No Yes NCBI 2017_08 genome   5916 5916
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   8 8
No Yes Sludge/US, Jazz Assembly (meta-genome)   5 5
No Yes Sludge/US, Phrap Assembly (meta-genome)   10 10
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   9 9
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   60 60
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   9 9
No Yes Uniprot 2018_03 genome   21835 21835
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   3 3
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   7 7
No Yes Protein Data Bank (all PDB sequenc)   44 44
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   128 128

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]