Select to display Genome Domains Proteins No ALL 50781 50781 Yes Homo sapiens 76_38 Human 61 61 Yes Pan troglodytes 76_2.1.4 Chimpanzee 18 18 Yes Gorilla gorilla 76_3.1 Western gorilla 26 26 Yes Pongo abelii 76_2 Sumatran orangutan 22 22 Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 17 17 Yes Papio anubis 76 Olive baboon 16 16 Yes Macaca mulatta 76_1 Rhesus monkey 25 25 Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 33 33 Yes Otolemur garnettii 76_3 Small-eared galago 17 17 Yes Microcebus murinus 76_1 Gray mouse lemur 21 17 Yes Rattus norvegicus 76_5.0 Norway rat 19 19 Yes Mus musculus 76_38 House mouse 34 34 Yes Dipodomys ordii 76_1 Ord's kangaroo rat 17 16 Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 17 17 Yes Heterocephalus glaber v1.7-2 Naked mole-rat 17 17 Yes Cavia porcellus 76_3 Domestic guinea pig 17 17 Yes Oryctolagus cuniculus 76_2 Rabbit 19 19 Yes Ochotona princeps 76 American pika 14 14 Yes Tupaia belangeri 76 Northern tree shrew 18 16 Yes Sus scrofa 76_10.2 Pig 20 20 Yes Bos taurus 76_3.1 Cattle 21 21 Yes Ovis aries 76_3.1 Sheep 21 21 Yes Vicugna pacos 76_1 Alpaca 19 14 Yes Tursiops truncatus 76_1 Bottlenose dolphin 16 16 Yes Mustela putorius furo 76_1.0 Domestic ferret 19 19 Yes Ailuropoda melanoleuca 76_1 Giant panda 24 24 Yes Canis familiaris 76_3.1 Dog 27 27 Yes Felis catus 76_6.2 Domestic cat 19 19 Yes Equus caballus 76_2 Horse 22 22 Yes Myotis lucifugus 76_2.0 Little brown bat 17 17 Yes Pteropus vampyrus 76_1 Large flying fox 17 15 Yes Sorex araneus 76_1 European shrew 13 13 Yes Erinaceus europaeus 76 Western European hedgehog 19 16 Yes Procavia capensis 76_1 Cape rock hyrax 17 15 Yes Loxodonta africana 76_3 African savanna elephant 22 22 Yes Echinops telfairi 76 Small Madagascar hedgehog 18 15 Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 23 23 Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 19 12 Yes Macropus eugenii 76_1.0 Tammar wallaby 20 16 Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 25 24 Yes Monodelphis domestica 76_5 Gray short-tailed opossum 21 21 Yes Ornithorhynchus anatinus 76_5 Platypus 20 20 Yes Saccoglossus kowalevskii v3.0 16 16 Yes Petromyzon marinus 76_7.0 Sea lamprey 11 11 Yes Meleagris gallopavo 76_2 Turkey 17 17 Yes Gallus gallus 76_4 Chicken 17 17 Yes Anas platyrhynchos 76_1.0 Mallard 16 16 Yes Taeniopygia guttata 76_3.2.4 Zebra finch 19 19 Yes Ficedula albicollis 76_1.0 Collared flycatcher 17 17 Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 22 22 Yes Anolis carolinensis 76_2.0 Green anole 19 19 Yes Xenopus laevis African clawed frog 23 23 Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 23 23 Yes Latimeria chalumnae 76_1 Coelacanth 20 20 Yes Lepisosteus oculatus 76 Spotted gar 23 23 Yes Gadus morhua 76_1 Atlantic cod 22 21 Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 34 34 Yes Takifugu rubripes 76_4 Torafugu 99 96 Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 32 31 Yes Oryzias latipes 76_1 Japanese medaka 19 19 Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 18 18 Yes Poecilia formosa 76 Amazon molly 20 19 Yes Oreochromis niloticus 76_1.0 Nile tilapia 28 28 Yes Astyanax mexicanus 76 Mexican tetra 21 19 Yes Danio rerio 76_9 Zebrafish 39 39 Yes Oikopleura dioica 12 12 Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 11 10 Yes Ciona intestinalis 76 Vase tunicate 6 6 Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 20 18 Yes Adineta vaga 28 27 Yes Octopus bimaculoides 280 20 19 Yes Crassostrea gigas 22 Pacific oyster 35 30 Yes Lottia gigantea Owl limpet 17 17 Yes Helobdella robusta 24 24 Yes Capitella sp. I 14 13 Yes Danaus plexippus OGS1.0 Monarch butterfly 10 10 Yes Heliconius melpomene Postman butterfly 9 8 Yes Bombyx mori Domestic silkworm 11 11 Yes Nasonia vitripennis Jewel wasp 9 9 Yes Apis mellifera 38.2d (Not maintained) Honey bee 45 45 Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 11 10 Yes Linepithema humile v1.1 Argentine ant 15 14 Yes Pogonomyrmex barbatus v1.2 Red harvester ant 11 11 Yes Solenopsis invicta v.2.2.3 Red fire ant 11 11 Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 11 11 Yes Atta cephalotes v1.1 13 13 Yes Camponotus floridanus v3.3 Florida carpenter ant 9 9 Yes Lucilia cuprina Australian sheep blowfly 13 11 Yes Drosophila grimshawi 1.3 21 20 Yes Drosophila willistoni 1.3 13 13 Yes Drosophila pseudoobscura 2.13 15 15 Yes Drosophila persimilis 1.3 16 16 Yes Drosophila suzukii 18 14 Yes Drosophila yakuba 1.3 16 16 Yes Drosophila simulans 1.3 15 15 Yes Drosophila sechellia 1.3 15 15 Yes Drosophila melanogaster 76_5 Fruit fly 21 21 Yes Drosophila erecta 1.3 15 13 Yes Drosophila ananassae 1.3 15 15 Yes Drosophila virilis 1.2 14 14 Yes Drosophila mojavensis 1.3 14 14 Yes Megaselia scalaris 22 8 8 Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 15 15 Yes Culex pipiens quinquefasciatus Southern house mosquito 13 13 Yes Anopheles darlingi 22 American malaria mosquito 8 6 Yes Anopheles gambiae 49_3j African malaria mosquito 13 13 Yes Tribolium castaneum 3.0 Red flour beetle 7 7 Yes Pediculus humanus corporis Human body louse 9 9 Yes Acyrthosiphon pisum Pea aphid 5 5 Yes Rhodnius prolixus 22 10 10 Yes Daphnia pulex Common water flea 26 24 Yes Strigamia maritima 22 14 12 Yes Sarcoptes scabiei 8 8 Yes Tetranychus urticae Two-spotted spider mite 9 9 Yes Ixodes scapularis Black-legged tick 10 9 Yes Pristionchus pacificus 8 8 Yes Meloidogyne incognita Southern root-knot nematode 13 12 Yes Meloidogyne hapla 9 9 Yes Onchocerca volvulus 22 7 7 Yes Brugia malayi WS250 Agent of lymphatic filariasis 6 6 Yes Caenorhabditis japonica 6 6 Yes Caenorhabditis brenneri 7 7 Yes Caenorhabditis remanei 6 6 Yes Caenorhabditis elegans 76_235 Roundworm 7 7 Yes Caenorhabditis briggsae 2 6 6 Yes Trichinella spiralis 22 4 4 Yes Hymenolepis microstoma 5 5 Yes Echinococcus multilocularis 4 4 Yes Echinococcus granulosus 4 4 Yes Taenia solium Pork tapeworm 5 5 Yes Schistosoma mansoni 8 7 Yes Mnemiopsis leidyi Sea walnut 5 5 Yes Thelohanellus kitauei 7 7 Yes Acropora digitifera v1.0 11 11 Yes Nematostella vectensis 1.0 Starlet sea anemone 8 8 Yes Hydra vulgaris 20 20 Yes Amphimedon queenslandica 6 6 Yes Trichoplax adhaerens 8 8 Yes Sphaeroforma arctica JP610 2 2 Yes Capsaspora owczarzaki ATCC 30864 1 1 Yes Mortierella verticillata NRRL 6337 2 2 Yes Piloderma croceum F 1598 v1.0 2 2 Yes Laccaria bicolor S238N-H82 10 10 Yes Daldinia eschscholzii EC12 v1.0 1 1 Yes Apiospora montagnei NRRL 25634 v1.0 1 1 Yes Magnaporthe poae ATCC 64411 22 2 2 Yes Magnaporthe grisea 70-15 2 2 Yes Podospora anserina 1 1 Yes Sporotrichum thermophile ATCC 42464 1 1 Yes Thielavia terrestris NRRL 8126 1 1 Yes Chaetomium globosum CBS 148.51 1 1 Yes Neurospora tetrasperma 1 1 Yes Neurospora discreta FGSC 8579 1 1 Yes Neurospora crassa OR74A 1 1 Yes Cryphonectria parasitica Chestnut blight fungus 1 1 Yes Verticillium albo-atrum VaMs.102 3 3 Yes Verticillium dahliae VdLs.17 3 3 Yes Acremonium alcalophilum v 1.0 1 1 Yes Glomerella graminicola 22 3 3 Yes Fusarium graminearum 3 3 Yes Nectria haematococca mpVI 2 2 Yes Fusarium oxysporum f. sp. lycopersici 4286 4 4 Yes Fusarium verticillioides 7600 3 3 Yes Trichoderma asperellum CBS 433.97 v1.0 1 1 Yes Trichoderma atroviride 1 1 Yes Trichoderma citrinoviride v1.0 1 1 Yes Trichoderma reesei 1.2 1 1 Yes Trichoderma virens Gv29-8 1 1 Yes Trichoderma longibrachiatum ATCC 18648 v1.0 1 1 Yes Trichoderma harzianum CBS 226.95 v1.0 1 1 Yes Botrytis cinerea B05.10 1 1 Yes Sclerotinia sclerotiorum 1 1 Yes Blumeria graminis 22 1 1 Yes Didymella exigua CBS 183.55 v1.0 2 2 Yes Leptosphaeria maculans 22 1 1 Yes Setosphaeria turcica v1.0 1 1 Yes Cochliobolus miyabeanus ATCC 44560 v1.0 1 1 Yes Cochliobolus victoriae FI3 v1.0 1 1 Yes Cochliobolus carbonum 26-R-13 v1.0 1 1 Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 1 1 Yes Alternaria brassicicola 1 1 Yes Cochliobolus lunatus m118 v2.0 1 1 Yes Pyrenophora teres f. teres 22 1 1 Yes Pyrenophora tritici-repentis 1 1 Yes Stagonospora nodorum 2 2 Yes Mycosphaerella graminicola IPO323 2 2 Yes Zasmidium cellare ATCC 36951 v1.0 2 2 Yes Septoria musiva v1.0 2 2 Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0 1 1 Yes Coccidioides posadasii RMSCC 3488 1 1 Yes Coccidioides immitis RS 1 1 Yes Ajellomyces dermatitidis SLH14081 1 1 Yes Microsporum canis CBS 113480 3 3 Yes Trichophyton equinum CBS 127.97 2 2 Yes Trichophyton verrucosum HKI 0517 1 1 Yes Arthroderma benhamiae CBS 112371 2 2 Yes Trichophyton tonsurans CBS 112818 2 2 Yes Trichophyton rubrum CBS 118892 2 2 Yes Uncinocarpus reesii 1704 1 1 Yes Aspergillus acidus v1.0 1 1 Yes Aspergillus brasiliensis v1.0 1 1 Yes Aspergillus versicolor v1.0 1 1 Yes Aspergillus carbonarius ITEM 5010 1 1 Yes Aspergillus terreus NIH2624 3 3 Yes Aspergillus tubingensis v1.0 1 1 Yes Aspergillus oryzae RIB40 1 1 Yes Aspergillus niger 22 1 1 Yes Aspergillus niger ATCC 1015 1 1 Yes Aspergillus flavus NRRL3357 1 1 Yes Penicillium marneffei ATCC 18224 2 2 Yes Tuber melanosporum Mel28 22 3 3 Yes Tuber melanosporum Vittad Perigord truffle 3 3 Yes Catenaria anguillulae PL171 v1.0 6 6 Yes Allomyces macrogynus ATCC 38327 3 3 Yes Spizellomyces punctatus DAOM BR117 1 1 Yes Selaginella moellendorffii 26 26 Yes Pinus taeda Loblolly pine 25 23 Yes Picea abies Norway spruce 10 10 Yes Eucalyptus grandis v201 Rose gum 16 16 Yes Theobroma cacao B97-61/B2 v1 Cacao 7 7 Yes Gossypium raimondii v221 18 18 Yes Citrus clementina v165 5 5 Yes Citrus sinensis v154 Sweet orange 5 5 Yes Thellungiella halophila v173 10 10 Yes Brassica rapa Chiifu-401 1.2 Field mustard 10 9 Yes Capsella rubella v183 11 11 Yes Arabidopsis lyrata Lyrate rockcress 8 8 Yes Arabidopsis thaliana 10 Thale cress 9 9 Yes Carica papaya Papaya 7 7 Yes Medicago truncatula Barrel medic 10 10 Yes Phaseolus vulgaris v186 French bean 9 9 Yes Glycine max v109 Soybean 16 16 Yes Cucumis sativus v122 Cucumber 14 14 Yes Fragaria vesca Wild strawberry 10 10 Yes Malus domestica v196 Apple 10 10 Yes Prunus persica v139 Peach 9 9 Yes Linum usitatissimum v200 Flax 16 16 Yes Manihot esculenta v147 Cassava 10 10 Yes Populus trichocarpa v156 Black cottonwood 8 8 Yes Vitis vinifera Wine grape 5 5 Yes Mimulus guttatus v140 Spotted monkey flower 10 10 Yes Solanum lycopersicum v.2.3 Tomato 8 8 Yes Solanum tuberosum Potato 8 7 Yes Actinidia chinensis Hongyang 8 7 Yes Aquilegia coerulea v195 14 14 Yes Triticum urartu 22 14 14 Yes Triticum aestivum 22 Bread wheat 45 45 Yes Aegilops tauschii 22 16 16 Yes Brachypodium distachyon Stiff brome 7 7 Yes Oryza barthii 22 African wild rice 16 15 Yes Oryza meridionalis 22 11 10 Yes Oryza glumaepatula 22 11 10 Yes Oryza glaberrima African rice 12 12 Yes Oryza punctata 22 14 14 Yes Oryza nivara 22 15 13 Yes Oryza brachyantha 22 Malo sina 12 12 Yes Oryza sativa ssp. japonica 5.0 Japanese rice 15 15 Yes Oryza sativa v193 Rice 15 15 Yes Phyllostachys heterocycla var. pubescens Kikko-chiku 5 5 Yes Panicum virgatum v202 Switchgrass 15 15 Yes Setaria italica v164 Foxtail millet 12 12 Yes Zea mays subsp. mays Maize 20 19 Yes Zea mays v181 Maize 23 22 Yes Sorghum bicolor Sorghum 12 12 Yes Musa balbisiana Balbis banana 11 10 Yes Musa acuminata 22 Wild Malaysian banana 10 10 Yes Amborella trichopoda 22 14 14 Yes Physcomitrella patens 6 6 Yes Coccomyxa subellipsoidea sp. C-169 v2 3 3 Yes Asterochloris sp. Cgr/DA1pho v1.0 1 1 Yes Chlorella variabilis sp. NC64A 4 4 Yes Chlorella vulgaris 3 3 Yes Volvox carteri f. nagariensis 4 4 Yes Volvox carteri v199 5 5 Yes Chlamydomonas reinhardtii 4.0 3 3 Yes Micromonas sp. RCC299 1 1 Yes Micromonas pusilla CCMP1545 v3.0 1 1 Yes Cyanidioschyzon merolae strain 10D 22 2 2 Yes Cyanidioschyzon merolae 2 2 Yes Porphyridium purpureum 02_2012 5 5 Yes Thecamonas trahens ATCC 50062 2 2 Yes Bigelowiella natans CCMP2755 22 8 8 Yes Leishmania mexicana 2.4 1 1 Yes Leishmania major strain Friedlin 1 1 Yes Leishmania infantum JPCM5 2.4 1 1 Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4 1 1 Yes Trypanosoma vivax 1 1 Yes Trypanosoma cruzi strain CL Brener 1 1 Yes Trypanosoma congolense 2.4 2 2 Yes Trypanosoma brucei gambiense v4.1 1 1 Yes Trypanosoma brucei TREU927 v4.1 1 1 Yes Ectocarpus siliculosus 1 1 Yes Aureococcus anophagefferens 1 1 Yes Albugo laibachii 22 2 2 Yes Pythium iwayamai DAOM BR242034 22 5 5 Yes Pythium arrhenomanes ATCC 12531 22 7 7 Yes Pythium ultimum v1.7-2 5 5 Yes Pythium aphanidermatum DAOM BR444 22 6 5 Yes Pythium irregulare DAOM BR486 22 8 8 Yes Pythium vexans DAOM BR484 22 7 6 Yes Phytophthora ramorum 1.1 Sudden oak death agent 10 10 Yes Phytophthora sojae 1.1 14 14 Yes Phytophthora infestans T30-4 13 13 Yes Phytophthora capsici 13 12 Yes Hyaloperonospora arabidopsidis 22 5 5 Yes Phaeodactylum tricornutum CCAP 1055/1 5 5 Yes Fragilariopsis cylindrus 11 11 Yes Thalassiosira pseudonana CCMP1335 4 4 Yes Perkinsus marinus ATCC 50983 9 9 Yes Paramecium tetraurelia 13 12 Yes Tetrahymena thermophila SB210 1 7 6 Yes Ichthyophthirius multifiliis strain G5 5 4 Yes Neospora caninum 2 2 Yes Toxoplasma gondii VEG 2 2 Yes Toxoplasma gondii ME49 2 2 Yes Toxoplasma gondii GT1 2 2 Yes Babesia bovis T2Bo 4 2 Yes Theileria parva 1 1 Yes Theileria annulata 2 1 Yes Plasmodium falciparum 3D7 1 1 Yes Plasmodium yoelii ssp. yoelii 1 1 1 Yes Plasmodium chabaudi 1 1 Yes Plasmodium berghei ANKA 1 1 Yes Symbiodinium minutum clade B1 v1.2 12 11 Yes Naegleria gruberi 1 1 Yes Guillardia theta CCMP2712 v1.0 16 16 Yes Emiliania huxleyi CCMP1516 4 4 Yes Leptolyngbya sp. PCC 7376 1 1 Yes Acaryochloris marina MBIC11017 1 1 Yes Synechococcus elongatus PCC 7942 1 1 Yes Geitlerinema sp. PCC 7407 1 1 Yes Cyanothece sp. PCC 8802 2 2 Yes Microcystis aeruginosa NIES-843 1 1 Yes Rivularia sp. PCC 7116 1 1 Yes Anabaena variabilis ATCC 29413 1 1 Yes Nostoc sp. PCC 7107 1 1 Yes Nostoc sp. PCC 7120 1 1 Yes Nostoc sp. PCC 7524 1 1 Yes Actinosynnema mirum DSM 43827 1 1 Yes Nocardioides sp. JS614 1 1 Yes Carnobacterium sp. 17-4 1 1 Yes Carnobacterium sp. WN1359 1 1 Yes Tetragenococcus halophilus NBRC 12172 1 1 Yes Enterococcus sp. 7L76 1 1 Yes Enterococcus faecium Aus0004 1 1 Yes Enterococcus faecalis 62 1 1 Yes Oenococcus oeni PSU-1 1 1 Yes Leuconostoc sp. C2 1 1 Yes Leuconostoc kimchii IMSNU 11154 1 1 Yes Leuconostoc citreum KM20 1 1 Yes Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 1 1 Yes Leuconostoc gasicomitatum LMG 18811 1 1 Yes Lactobacillus casei ATCC 334 1 1 Yes Lactobacillus rhamnosus Lc 705 1 1 Yes Lactobacillus fermentum IFO 3956 1 1 Yes Lactobacillus plantarum JDM1 1 1 Yes Lactobacillus helveticus DPC 4571 1 1 Yes Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 1 Yes Lactobacillus buchneri NRRL B-30929 1 1 Yes Lactobacillus brevis ATCC 367 1 1 Yes Pediococcus claussenii ATCC BAA-344 1 1 Yes Pediococcus pentosaceus ATCC 25745 1 1 Yes Streptococcus infantarius subsp. infantarius CJ18 1 1 Yes Streptococcus mutans NN2025 1 1 Yes Streptococcus thermophilus LMD-9 1 1 Yes Streptococcus salivarius 57.I 1 1 Yes Paenibacillus terrae HPL-003 1 1 Yes Paenibacillus mucilaginosus 3016 1 1 Yes Paenibacillus polymyxa M1 1 1 Yes Listeria welshimeri serovar 6b str. SLCC5334 1 1 Yes Listeria innocua Clip11262 1 1 Yes Listeria seeligeri serovar 1/2b str. SLCC3954 1 1 Yes Listeria monocytogenes serotype 4b str. CLIP 80459 1 1 Yes Listeria ivanovii subsp. ivanovii PAM 55 1 1 Yes Solibacillus silvestris StLB046 1 1 Yes Bacillus halodurans C-125 1 1 Yes Bacillus pseudofirmus OF4 1 1 Yes Bacillus clausii KSM-K16 1 1 Yes Saprospira grandis str. Lewin 1 1 Yes Fibrella aestuarina 1 1 Yes Krokinobacter sp. 4H-3-7-5 1 1 Yes Rhodopirellula baltica SH 1 1 1 Yes Thermovibrio ammonificans HB-1 1 1 Yes Sulfurihydrogenibium sp. YO3AOP1 1 1 Yes Sulfurihydrogenibium azorense Az-Fu1 1 1 Yes Persephonella marina EX-H1 1 1 Yes Candidatus Nitrospira defluvii 1 1 Yes Arcobacter nitrofigilis DSM 7299 1 1 Yes Campylobacter lari RM2100 1 1 Yes Sulfurimonas denitrificans DSM 1251 1 1 Yes Helicobacter cetorum MIT 00-7128 1 1 Yes Helicobacter bizzozeronii CIII-1 1 1 Yes Helicobacter hepaticus ATCC 51449 1 1 Yes Helicobacter mustelae 12198 1 1 Yes Helicobacter felis ATCC 49179 1 1 Yes Helicobacter acinonychis str. Sheeba 1 1 Yes Helicobacter pylori B38 1 1 Yes Nitratiruptor sp. SB155-2 1 1 Yes Sulfurovum sp. NBC37-1 1 1 Yes Haliangium ochraceum DSM 14365 1 1 Yes Corallococcus coralloides DSM 2259 1 1 Yes Myxococcus fulvus HW-1 1 1 Yes Dechloromonas aromatica RCB 1 1 Yes Thauera sp. MZ1T 1 1 Yes Azoarcus sp. KH32C 2 2 Yes Azoarcus sp. BH72 1 1 Yes Dechlorosoma suillum PS 1 1 Yes Neisseria gonorrhoeae NCCP11945 1 1 Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1 2 2 Yes Rubrivivax gelatinosus IL144 1 1 Yes Leptothrix cholodnii SP-6 1 1 Yes Ralstonia eutropha JMP134 1 1 Yes Cupriavidus taiwanensis LMG 19424 1 1 Yes Cupriavidus necator N-1 1 1 Yes Ralstonia eutropha H16 1 1 Yes Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 1 1 Yes Burkholderia cenocepacia HI2424 1 1 Yes Acidovorax sp. KKS102 1 1 Yes Thiobacillus denitrificans ATCC 25259 1 1 Yes Nitrosospira multiformis ATCC 25196 2 2 Yes Nitrosomonas sp. Is79A3 2 2 Yes Nitrosomonas eutropha C91 1 1 Yes Nitrosomonas europaea ATCC 19718 1 1 Yes Gallionella capsiferriformans ES-2 1 1 Yes Methylotenera versatilis 301 1 1 Yes Methylotenera mobilis JLW8 1 1 Yes Asticcacaulis excentricus CB 48 1 1 Yes Brevundimonas subvibrioides ATCC 15264 1 1 Yes Hirschia baltica ATCC 49814 1 1 Yes Phaeobacter gallaeciensis 2.10 1 1 Yes Roseobacter litoralis Och 149 1 1 Yes Roseobacter denitrificans OCh 114 1 1 Yes Magnetospirillum magneticum AMB-1 1 1 Yes Rhodospirillum centenum SW 1 1 Yes Rhodospirillum rubrum F11 1 1 Yes Xanthobacter autotrophicus Py2 1 1 Yes Methylobacterium sp. 4-46 1 1 Yes Sinorhizobium fredii NGR234 1 1 Yes Sinorhizobium medicae WSM419 1 1 Yes Sinorhizobium meliloti AK83 3 3 Yes Mesorhizobium opportunistum WSM2075 1 1 Yes Mesorhizobium ciceri biovar biserrulae WSM1271 1 1 Yes Mesorhizobium loti MAFF303099 1 1 Yes Methylocella silvestris BL2 1 1 Yes Rhodopseudomonas palustris BisA53 1 1 Yes Bradyrhizobium japonicum USDA 110 1 1 Yes Bradyrhizobium sp. ORS 278 1 1 Yes Teredinibacter turnerae T7901 1 1 Yes Pasteurella multocida subsp. multocida str. 3480 1 1 Yes Haemophilus parainfluenzae T3T1 1 1 Yes Oceanimonas sp. GK1 1 1 Yes Tolumonas auensis DSM 9187 1 1 Yes Aeromonas veronii B565 1 1 Yes Aeromonas salmonicida subsp. salmonicida A449 1 1 Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966 1 1 Yes Aliivibrio salmonicida LFI1238 1 1 Yes Vibrio fischeri MJ11 1 1 Yes Vibrio sp. Ex25 2 2 Yes Vibrio harveyi ATCC BAA-1116 1 1 Yes Vibrio parahaemolyticus RIMD 2210633 2 2 Yes Vibrio splendidus LGP32 1 1 Yes Vibrio anguillarum 775 1 1 Yes Vibrio furnissii NCTC 11218 2 2 Yes Vibrio vulnificus MO6-24/O 1 1 Yes Vibrio cholerae O395 1 1 Yes Photobacterium profundum SS9 1 1 Yes Psychromonas ingrahamii 37 1 1 Yes Ferrimonas balearica DSM 9799 1 1 Yes Shewanella baltica OS185 1 1 Yes Shewanella woodyi ATCC 51908 1 1 Yes Shewanella violacea DSS12 1 1 Yes Shewanella frigidimarina NCIMB 400 1 1 Yes Colwellia psychrerythraea 34H 1 1 Yes Glaciecola nitratireducens FR1064 1 1 Yes Hahella chejuensis KCTC 2396 1 1 Yes Alcanivorax borkumensis SK2 1 1 Yes Marinomonas sp. MWYL1 1 1 Yes Methylomicrobium alcaliphilum 2 2 Yes Methylococcus capsulatus str. Bath 1 1 Yes Xanthomonas axonopodis pv. citri str. 306 1 1 Yes Xanthomonas campestris pv. campestris str. B100 1 1 Yes Allochromatium vinosum DSM 180 1 1 Yes Thiocystis violascens DSM 198 2 2 Yes Nitrosococcus halophilus Nc4 1 1 Yes Nitrosococcus oceani ATCC 19707 1 1 Yes Xenorhabdus nematophila ATCC 19061 1 1 Yes Rahnella sp. Y9602 1 1 Yes Rahnella aquatilis CIP 78.65 = ATCC 33071 1 1 Yes Serratia sp. AS12 1 1 Yes Serratia plymuthica AS9 1 1 Yes Serratia proteamaculans 568 1 1 Yes Pectobacterium wasabiae WPP163 1 1 Yes Pectobacterium sp. SCC3193 1 1 Yes Pectobacterium atrosepticum SCRI1043 1 1 Yes Pectobacterium carotovorum subsp. carotovorum PC1 1 1 Yes Pantoea vagans C9-1 1 1 Yes Cronobacter turicensis z3032 1 1 Yes Salmonella bongori NCTC 12419 1 1 Yes Klebsiella oxytoca E718 1 1 Yes Enterobacter sp. 638 1 1 Yes Enterobacter asburiae LF7a 1 1 Yes Enterobacter cloacae subsp. dissolvens SDM 1 1 Yes Citrobacter koseri ATCC BAA-895 1 1 Yes Pseudomonas sp. UW4 1 1 Yes Pseudomonas mendocina ymp 1 1 Yes Thiomicrospira crunogena XCL-2 1 1 Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 40 40 Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 16 16 Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 14 14 Yes Ascaris suum Victoria/Ghent Pig roundworm 11 11 Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 7 7 Yes Coccidioides posadasii str. Silveira 1 1 Yes Coccidioides immitis RMSCC 3703 1 1 Yes Coccidioides immitis RMSCC 2394 1 1 Yes Coccidioides immitis H538.4 1 1 Yes Ajellomyces dermatitidis ER-3 1 1 Yes Batrachochytrium dendrobatidis JEL423 1 1 Yes Batrachochytrium dendrobatidis JAM81 1 1 Yes Theobroma cacao Matina 1-6 v0.9 Cacao 7 7 Yes Hordeum vulgare 22 Domesticated barley 17 17 Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 14 14 Yes Trypanosoma brucei Lister 427 v4.1 1 1 Yes Neospora caninum Nc-Liverpool 6.2 2 2 Yes Plasmodium falciparum HB3 2 2 Yes Plasmodium falciparum Dd2 1 1 Yes Chamaesiphon minutus PCC 6605 1 1 Yes Synechococcus sp. PCC 7002 1 1 Yes Synechococcus elongatus PCC 6301 1 1 Yes Cyanothece sp. PCC 7822 4 4 Yes Cyanothece sp. PCC 7424 1 1 Yes Cyanothece sp. ATCC 51142 1 1 Yes Cyanothece sp. PCC 8801 2 2 Yes Anabaena cylindrica PCC 7122 1 1 Yes Saccharothrix espanaensis DSM 44229 1 1 Yes Amycolatopsis orientalis HCCB10007 1 1 Yes Nocardia brasiliensis ATCC 700358 1 1 Yes Leifsonia xyli subsp. cynodontis DSM 46306 2 2 Yes Carnobacterium maltaromaticum LMA28 2 2 Yes Enterococcus mundtii QU 25 1 1 Yes Enterococcus casseliflavus EC20 1 1 Yes Enterococcus faecium Aus0085 1 1 Yes Enterococcus faecium NRRL B-2354 1 1 Yes Enterococcus faecium DO 1 1 Yes Enterococcus faecalis str. Symbioflor 1 1 1 Yes Enterococcus faecalis D32 1 1 Yes Enterococcus faecalis OG1RF 1 1 Yes Enterococcus faecalis V583 1 1 Yes Leuconostoc carnosum JB16 1 1 Yes Leuconostoc mesenteroides subsp. mesenteroides J18 1 1 Yes Leuconostoc gelidum JB7 1 1 Yes Lactobacillus paracasei subsp. paracasei 8700:2 1 1 Yes Lactobacillus casei LOCK919 1 1 Yes Lactobacillus casei W56 1 1 Yes Lactobacillus casei LC2W 1 1 Yes Lactobacillus casei BD-II 1 1 Yes Lactobacillus casei BL23 1 1 Yes Lactobacillus casei str. Zhang 1 1 Yes Lactobacillus rhamnosus LOCK908 1 1 Yes Lactobacillus rhamnosus LOCK900 1 1 Yes Lactobacillus rhamnosus ATCC 8530 1 1 Yes Lactobacillus rhamnosus GG 1 1 Yes Lactobacillus rhamnosus GG 1 1 Yes Lactobacillus fermentum F-6 1 1 Yes Lactobacillus plantarum 16 1 1 Yes Lactobacillus plantarum ZJ316 1 1 Yes Lactobacillus plantarum subsp. plantarum ST-III 1 1 Yes Lactobacillus plantarum subsp. plantarum P-8 1 1 Yes Lactobacillus plantarum WCFS1 1 1 Yes Lactobacillus delbrueckii subsp. bulgaricus ND02 1 1 Yes Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 1 1 Yes Lactobacillus delbrueckii subsp. bulgaricus 2038 1 1 Yes Lactobacillus brevis KB290 1 1 Yes Pediococcus pentosaceus SL4 1 1 Yes Streptococcus mutans GS-5 1 1 Yes Streptococcus mutans LJ23 1 1 Yes Streptococcus mutans UA159 1 1 Yes Streptococcus thermophilus MN-ZLW-002 1 1 Yes Streptococcus thermophilus JIM 8232 1 1 Yes Streptococcus thermophilus ND03 1 1 Yes Streptococcus thermophilus CNRZ1066 1 1 Yes Streptococcus thermophilus LMG 18311 1 1 Yes Streptococcus salivarius CCHSS3 1 1 Yes Streptococcus salivarius JIM8777 1 1 Yes Paenibacillus mucilaginosus KNP414 1 1 Yes Paenibacillus mucilaginosus K02 1 1 Yes Paenibacillus polymyxa CR1 1 1 Yes Paenibacillus polymyxa SC2 1 1 Yes Paenibacillus polymyxa E681 1 1 Yes Listeria monocytogenes EGD sequence 1 1 Yes Listeria monocytogenes N53-1 2 2 Yes Listeria monocytogenes La111 2 2 Yes Listeria monocytogenes serotype 4b str. LL195 1 1 Yes Listeria monocytogenes 07PF0776 1 1 Yes Listeria monocytogenes M7 1 1 Yes Listeria monocytogenes J1-220 1 1 Yes Listeria monocytogenes J1816 1 1 Yes Listeria monocytogenes SLCC2376 1 1 Yes Listeria monocytogenes SLCC5850 1 1 Yes Listeria monocytogenes ATCC 19117 1 1 Yes Listeria monocytogenes L312 1 1 Yes Listeria monocytogenes SLCC2479 1 1 Yes Listeria monocytogenes SLCC7179 1 1 Yes Listeria monocytogenes SLCC2540 1 1 Yes Listeria monocytogenes SLCC2378 1 1 Yes Listeria monocytogenes serotype 1/2b str. SLCC2755 1 1 Yes Listeria monocytogenes serotype 1/2c str. SLCC2372 1 1 Yes Listeria monocytogenes serotype 7 str. SLCC2482 1 1 Yes Listeria monocytogenes 08-5578 1 1 Yes Listeria monocytogenes 08-5923 1 1 Yes Listeria monocytogenes L99 1 1 Yes Listeria monocytogenes HCC23 1 1 Yes Listeria monocytogenes 10403S 1 1 Yes Listeria monocytogenes J0161 1 1 Yes Listeria monocytogenes Finland 1998 1 1 Yes Listeria monocytogenes FSL R2-561 1 1 Yes Listeria monocytogenes serotype 4b str. F2365 1 1 Yes Listeria monocytogenes EGD-e 1 1 Yes Singulisphaera acidiphila DSM 18658 1 1 Yes Helicobacter cetorum MIT 99-5656 1 1 Yes Helicobacter pylori BM012S 1 1 Yes Helicobacter pylori BM012A 1 1 Yes Helicobacter pylori SouthAfrica20 1 1 Yes Helicobacter pylori UM298 1 1 Yes Helicobacter pylori UM066 1 1 Yes Helicobacter pylori UM037 1 1 Yes Helicobacter pylori UM299 1 1 Yes Helicobacter pylori UM032 1 1 Yes Helicobacter pylori OK310 1 1 Yes Helicobacter pylori OK113 1 1 Yes Helicobacter pylori Rif2 1 1 Yes Helicobacter pylori Rif1 1 1 Yes Helicobacter pylori HUP-B14 1 1 Yes Helicobacter pylori PeCan18 1 1 Yes Helicobacter pylori Shi169 1 1 Yes Helicobacter pylori Shi112 1 1 Yes Helicobacter pylori Shi417 1 1 Yes Helicobacter pylori XZ274 1 1 Yes Helicobacter pylori Aklavik86 1 1 Yes Helicobacter pylori Aklavik117 1 1 Yes Helicobacter pylori SNT49 1 1 Yes Helicobacter pylori Puno135 1 1 Yes Helicobacter pylori Puno120 1 1 Yes Helicobacter pylori ELS37 1 1 Yes Helicobacter pylori Gambia94/24 1 1 Yes Helicobacter pylori SouthAfrica7 1 1 Yes Helicobacter pylori India7 1 1 Yes Helicobacter pylori Lithuania75 1 1 Yes Helicobacter pylori 2017 1 1 Yes Helicobacter pylori 2018 1 1 Yes Helicobacter pylori 908 1 1 Yes Helicobacter pylori F57 1 1 Yes Helicobacter pylori F30 1 1 Yes Helicobacter pylori F16 1 1 Yes Helicobacter pylori Sat464 1 1 Yes Helicobacter pylori Cuz20 1 1 Yes Helicobacter pylori PeCan4 1 1 Yes Helicobacter pylori SJM180 1 1 Yes Helicobacter pylori B8 1 1 Yes Helicobacter pylori 52 1 1 Yes Helicobacter pylori v225d 1 1 Yes Helicobacter pylori 83 1 1 Yes Helicobacter pylori 35A 1 1 Yes Helicobacter pylori P12 1 1 Yes Helicobacter pylori G27 1 1 Yes Helicobacter pylori Shi470 1 1 Yes Helicobacter pylori HPAG1 1 1 Yes Helicobacter pylori 51 1 1 Yes Helicobacter pylori F32 1 1 Yes Helicobacter pylori J99 1 1 Yes Helicobacter pylori 26695 1 1 Yes Helicobacter pylori 26695 1 1 Yes Neisseria gonorrhoeae TCDC-NG08107 1 1 Yes Neisseria gonorrhoeae FA 1090 1 1 Yes Burkholderia cenocepacia MC0-3 1 1 Yes Burkholderia cenocepacia AU 1054 1 1 Yes Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR 1 1 Yes Nitrosomonas sp. AL212 1 1 Yes Phaeobacter gallaeciensis DSM 17395 1 1 Yes Phaeobacter gallaeciensis DSM 26640 1 1 Yes Rhodospirillum rubrum ATCC 11170 1 1 Yes Sinorhizobium fredii USDA 257 1 1 Yes Sinorhizobium fredii HH103 1 1 Yes Sinorhizobium meliloti GR4 2 2 Yes Sinorhizobium meliloti Rm41 1 1 Yes Sinorhizobium meliloti SM11 2 2 Yes Sinorhizobium meliloti 1021 1 1 Yes Rhizobium etli bv. mimosae str. Mim1 1 1 Yes Mesorhizobium australicum WSM2073 1 1 Yes Hyphomicrobium nitrativorans NL23 1 1 Yes Rhodopseudomonas palustris DX-1 1 1 Yes Rhodopseudomonas palustris TIE-1 1 1 Yes Rhodopseudomonas palustris HaA2 1 1 Yes Rhodopseudomonas palustris BisB5 1 1 Yes Rhodopseudomonas palustris BisB18 1 1 Yes Rhodopseudomonas palustris CGA009 1 1 Yes Bradyrhizobium sp. S23321 1 1 Yes Bradyrhizobium sp. BTAi1 1 1 Yes Bradyrhizobium oligotrophicum S58 1 1 Yes Mannheimia succiniciproducens MBEL55E 1 1 Yes Mannheimia haemolytica USMARC_2286 2 2 Yes Mannheimia haemolytica M42548 2 2 Yes Mannheimia haemolytica D174 2 2 Yes Mannheimia haemolytica D153 2 2 Yes Mannheimia haemolytica USDA-ARS-USMARC-183 2 2 Yes Mannheimia haemolytica USDA-ARS-USMARC-185 2 2 Yes Pasteurella multocida 36950 1 1 Yes Pasteurella multocida subsp. multocida str. HN06 1 1 Yes Pasteurella multocida subsp. multocida str. Pm70 1 1 Yes Actinobacillus suis H91-0380 1 1 Yes Aeromonas hydrophila ML09-119 1 1 Yes Vibrio fischeri ES114 1 1 Yes Vibrio sp. EJY3 1 1 Yes Vibrio parahaemolyticus BB22OP 2 2 Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749 2 2 Yes Vibrio anguillarum Listonella anguillarum M3 1 1 Yes Vibrio vulnificus CMCP6 1 1 Yes Vibrio vulnificus YJ016 1 1 Yes Vibrio cholerae LMA3984-4 1 1 Yes Vibrio cholerae M66-2 1 1 Yes Vibrio cholerae O395 1 1 Yes Vibrio cholerae IEC224 1 1 Yes Vibrio cholerae O1 str. 2010EL-1786 1 1 Yes Vibrio cholerae MJ-1236 1 1 Yes Vibrio cholerae O1 biovar El Tor str. N16961 1 1 Yes Shewanella baltica OS678 1 1 Yes Shewanella baltica OS223 1 1 Yes Shewanella baltica OS195 1 1 Yes Xanthomonas campestris pv. vesicatoria str. 85-10 1 1 Yes Xanthomonas axonopodis pv. citrumelo F1 1 1 Yes Xanthomonas axonopodis Xac29-1 1 1 Yes Xanthomonas campestris pv. raphani 756C 1 1 Yes Xanthomonas campestris pv. campestris str. 8004 1 1 Yes Xanthomonas campestris pv. campestris str. ATCC 33913 1 1 Yes Thioflavicoccus mobilis 8321 1 1 Yes Rahnella aquatilis HX2 1 1 Yes Yersinia enterocolitica subsp. palearctica 105.5R(r) 1 1 Yes Yersinia enterocolitica subsp. palearctica Y11 1 1 Yes Serratia sp. AS13 1 1 Yes Serratia plymuthica S13 1 1 Yes Serratia plymuthica 4Rx13 1 1 Yes Pectobacterium carotovorum subsp. carotovorum PCC21 1 1 Yes Cronobacter sakazakii CMCC 45402 1 1 Yes Salmonella bongori N268-08 1 1 Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980 1 1 Yes Klebsiella oxytoca KCTC 1686 1 1 Yes Enterobacter cloacae EcWSU1 1 1 Yes Enterobacter cloacae subsp. cloacae ENHKU01 1 1 Yes Enterobacter cloacae subsp. cloacae NCTC 9394 1 1 Yes Enterobacter cloacae subsp. cloacae ATCC 13047 1 1 Yes Acinetobacter johnsonii SH046 1 1 Yes Acinetobacter lwoffii SH145 1 1 Yes Homo sapiens 75_37 (old version GRC) Human 62 62 Yes Homo sapiens Human 27 27 Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 18 18 Yes Heliconius numata 2 2 Yes Loa loa v3.3 (Request) Eye worm 7 7 Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 12 12 Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 7 7 Yes Moniliophthora perniciosa FA553 4 4 Yes Picea sitchensis Sitka spruce 1 1 Yes Lotus japonicus 6 6 Yes Malus x domestica (Duplicate) Apple 10 10 Yes Ricinus communis Castor bean 9 9 Yes Nicotiana benthamiana 0.4.4 (Early draft) 11 11 Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 8 8 Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 8 8 Yes Phoenix dactylifera Date palm 6 6 Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC) 1 1 Yes Homo sapiens 69_37 Human 18 18 Yes Pan troglodytes 69_2.1.4 Chimpanzee 17 17 Yes Gorilla gorilla 69_3.1 Western gorilla 17 17 Yes Pongo abelii 69_2 Sumatran orangutan 22 22 Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 17 17 Yes Macaca mulatta 69_1 Rhesus monkey 17 17 Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 19 19 Yes Otolemur garnettii 69_3 Small-eared galago 17 17 Yes Microcebus murinus 69_1 Gray mouse lemur 21 17 Yes Rattus norvegicus 69_3.4 Norway rat 18 18 Yes Mus musculus 69_38 House mouse 18 18 Yes Dipodomys ordii 69_1 Ord's kangaroo rat 17 16 Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 16 16 Yes Cavia porcellus 69_3 Domestic guinea pig 17 17 Yes Oryctolagus cuniculus 69_2 Rabbit 18 18 Yes Ochotona princeps 69 American pika 14 14 Yes Tupaia belangeri 69 Northern tree shrew 18 16 Yes Sus scrofa 69_10.2 Pig 19 19 Yes Bos taurus 69_3.1 Cattle 18 18 Yes Vicugna pacos 69_1 Alpaca 19 14 Yes Tursiops truncatus 69_1 Bottlenose dolphin 16 16 Yes Mustela putorius furo 69_1.0 Domestic ferret 19 19 Yes Ailuropoda melanoleuca 69_1 Giant panda 19 19 Yes Canis familiaris 69_3.1 Dog 19 19 Yes Felis catus 69 Domestic cat 18 17 Yes Equus caballus 69_2 Horse 18 18 Yes Myotis lucifugus 69_2.0 Little brown bat 16 16 Yes Pteropus vampyrus 69_1 Large flying fox 17 15 Yes Sorex araneus 69_1 European shrew 13 13 Yes Erinaceus europaeus 69 Western European hedgehog 19 16 Yes Procavia capensis 69_1 Cape rock hyrax 17 15 Yes Loxodonta africana 69_3 African savanna elephant 18 18 Yes Echinops telfairi 69 Small Madagascar hedgehog 18 15 Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 18 16 Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 19 12 Yes Macropus eugenii 69_1.0 Tammar wallaby 20 16 Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 20 19 Yes Monodelphis domestica 69_5 Gray short-tailed opossum 20 20 Yes Ornithorhynchus anatinus 69_5 Platypus 19 19 Yes Petromyzon marinus 69_7.0 Sea lamprey 11 11 Yes Meleagris gallopavo 69_2 Turkey 14 14 Yes Gallus gallus 69_2 Chicken 16 16 Yes Taeniopygia guttata 69_3.2.4 Zebra finch 18 18 Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 16 16 Yes Anolis carolinensis 69_2.0 Green anole 18 18 Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 19 19 Yes Latimeria chalumnae 69_1 Coelacanth 18 18 Yes Gadus morhua 69_1 Atlantic cod 22 21 Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 26 26 Yes Takifugu rubripes 69_4 Torafugu 26 25 Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 23 22 Yes Oryzias latipes 69_1 Japanese medaka 15 15 Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 18 18 Yes Oreochromis niloticus 69_1.0 Nile tilapia 21 21 Yes Danio rerio 69_9 Zebrafish 25 25 Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 4 3 Yes Ciona intestinalis 69 Vase tunicate 6 6 Yes Drosophila melanogaster 69_5 Fruit fly 15 15 Yes Caenorhabditis elegans 69_215 Roundworm 6 6 Yes Arabidopsis thaliana 10 Thale cress 8 8 Yes 5_050719P (meta-genome) 1 1 Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome) 1 1 Yes Atta cephalotes fungus garden (ACEF) (meta-genome) 5 5 Yes Combined (meta-genome) 14 14 Yes Cyphomyrmex longiscapus fungus garden (meta-genome) 14 14 Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome) 4 4 Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome) 3 3 Yes Dump bottom (Dump bottom) (meta-genome) 10 10 Yes Dump top (Dump top) (meta-genome) 5 5 Yes Endophytic microbiome from Rice (meta-genome) 3 3 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome) 2 2 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome) 3 3 Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome) 5 5 Yes Fungus garden combined (combined) (meta-genome) 14 14 Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome) 21 21 Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome) 16 16 Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome) 1 1 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome) 1 1 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome) 1 1 Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome) 2 2 Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome) 3 3 Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome) 2 2 Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) 25 25 Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome) 2 2 Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome) 1 1 Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) 5 5 Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome) 6 6 Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome) 14 14 Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome) 3 3 Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome) 1 1 Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome) 2 2 Yes NCBI 2017_08 genome 23874 23729 Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) 7 7 Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome) 1 1 Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome) 1 1 Yes Protozoadb 2010_08 (Protozoadb) 28 26 Yes simHC - Simulated High Complexity Metagenome (meta-genome) 5 5 Yes simLC - Simulated Low Complexity Metagenome (meta-genome) 8 8 Yes simMC - Simulated Medium Complexity Metagenome (meta-genome) 5 5 Yes Sludge/Australian, Phrap Assembly (meta-genome) 4 4 Yes Sludge/US, Jazz Assembly (meta-genome) 3 3 Yes Sludge/US, Phrap Assembly (meta-genome) 5 5 Yes Soil microbial communities from Minnesota Farm (meta-genome) 1 1 Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) 5 5 Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) 2 2 Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome) 1 1 Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome) 3 3 Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) 10 10 Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome) 9 9 Yes STRING v9.0.5 (STRING) 1094 1080 Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) 5 5 Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome) 3 3 Yes Uniprot 2018_03 genome 13298 13050 Yes Global Ocean Sampling Expedition (GOS) 87 87 Yes NCBI plasmid sequences (Plasmids) 18 18 Yes NCBI viral sequences (Viral) 11 11 Yes PDB chains (SCOP 1.75 ) (PDB) 72 72 Yes Protein Data Bank (all PDB sequenc) 1131 1131 Yes SCOP2 SCOPe CATH ECOD (all domain sequ) 2565 2565 Yes TargetDB 23 23 Yes The Salmonella enterica Pan-genome (meta-genome) 1 1 Yes UniProt 44 44
