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  Home > Genomes > alpha-D-mannose-specific plant lectins domains in all eukaryotic genomes


alpha-D-mannose-specific plant lectins superfamily domain assignments
in
all eukaryotic genomes

Assignment details

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25 selected genomes have 73 significant domains in 66 proteins.

Showing genomes 1 to 25 of 136
  1 2 3 4 5 6   Next Last

Saccoglossus kowalevskii v3.0 has 2 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Sakowv30014654m   0.000000393   541-620   alpha-D-mannose-specific plant lectins  
  0.0000106   621-684   alpha-D-mannose-specific plant lectins  
  0.000125   319-382   alpha-D-mannose-specific plant lectins  
  0.00201   45-104   alpha-D-mannose-specific plant lectins  
  0.00398   485-555   alpha-D-mannose-specific plant lectins  
  0.00446   202-270   alpha-D-mannose-specific plant lectins  
  0.018   362-441   alpha-D-mannose-specific plant lectins  
  0.0662   95-137   alpha-D-mannose-specific plant lectins  
 
Weak hits:
Sakowv30011080m   0.0414   59-78   alpha-D-mannose-specific plant lectins  
Sakowv30018672m   0.032   162-208   alpha-D-mannose-specific plant lectins  
Sakowv30019633m   0.0576   17-70   alpha-D-mannose-specific plant lectins  

Lepisosteus oculatus 76 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSLOCP00000000484   2.2e-18   19-117   alpha-D-mannose-specific plant lectins  
ENSLOCP00000000669   3.6e-19   16-112   alpha-D-mannose-specific plant lectins  
 
Weak hits:
ENSLOCP00000006424   0.0157   2-51   alpha-D-mannose-specific plant lectins  

Gadus morhua 76_1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGMOP00000018483   0.00000000000000183   4-93   alpha-D-mannose-specific plant lectins  
ENSGMOP00000021989   0.00000000000942   1-51   alpha-D-mannose-specific plant lectins  
  0.000746   54-80   alpha-D-mannose-specific plant lectins  
 
Weak hits:
ENSGMOP00000005018   0.0441   64-116   alpha-D-mannose-specific plant lectins  

Tetraodon nigroviridis 76_8 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTNIP00000020281   1.23e-22   9-113   alpha-D-mannose-specific plant lectins  

Takifugu rubripes 76_4 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTRUP00000000878   1.13e-21   6-111   alpha-D-mannose-specific plant lectins  
ENSTRUP00000002732   0.000000000000038   5-66   alpha-D-mannose-specific plant lectins  
 
Weak hits:
ENSTRUP00000009816   0.0921   98-156   alpha-D-mannose-specific plant lectins  
ENSTRUP00000025251   0.0784   1-55,99-106   alpha-D-mannose-specific plant lectins  

Gasterosteus aculeatus 76_1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGACP00000006191   1.53e-22   2-112   alpha-D-mannose-specific plant lectins  
ENSGACP00000006193   5.45e-22   2-111   alpha-D-mannose-specific plant lectins  
ENSGACP00000006196   1.56e-21   2-111   alpha-D-mannose-specific plant lectins  
 
Weak hits:
ENSGACP00000017544   0.0777   6-55   alpha-D-mannose-specific plant lectins  

Xiphophorus maculatus 76_4.4.2 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSXMAP00000000087   0.00000615   423-480   alpha-D-mannose-specific plant lectins  
ENSXMAP00000015223   3.22e-20   3-110   alpha-D-mannose-specific plant lectins  

Poecilia formosa 76 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPFOP00000011989   2.78e-20   3-111   alpha-D-mannose-specific plant lectins  
ENSPFOP00000012012   1.65e-20   3-110   alpha-D-mannose-specific plant lectins  
ENSPFOP00000019302   3.04e-21   3-111   alpha-D-mannose-specific plant lectins  
 
Weak hits:
ENSPFOP00000013810   0.0612   27-96   alpha-D-mannose-specific plant lectins  

Oreochromis niloticus 76_1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSONIP00000007860   4.45e-22   3-110   alpha-D-mannose-specific plant lectins  
 
Weak hits:
ENSONIP00000001768   0.0144   1-55   alpha-D-mannose-specific plant lectins  

Astyanax mexicanus 76 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSAMXP00000002757   1.71e-22   14-111   alpha-D-mannose-specific plant lectins  
ENSAMXP00000009590   0.0000000000000171   1-82   alpha-D-mannose-specific plant lectins  

Adineta vaga has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
GSADVT00010263001   1.27e-16   381-479   alpha-D-mannose-specific plant lectins  
GSADVT00043422001   0.000000000000041   381-481   alpha-D-mannose-specific plant lectins  

Culex pipiens quinquefasciatus has 12 significant domains in 12 proteins.

     

Sequence ID   Evalue   Region   Family  
CPIJ003049|conserved   0.0000699   29-106   alpha-D-mannose-specific plant lectins  
CPIJ007211|conserved   0.0000288   62-164   alpha-D-mannose-specific plant lectins  
CPIJ007214|conserved   0.0000734   55-142   alpha-D-mannose-specific plant lectins  
CPIJ009318|conserved   0.0000157   96-193   alpha-D-mannose-specific plant lectins  
CPIJ010167|conserved   0.0000564   48-111   alpha-D-mannose-specific plant lectins  
CPIJ015290|conserved   0.000038   24-106   alpha-D-mannose-specific plant lectins  
CPIJ016465|conserved   0.0000336   31-106   alpha-D-mannose-specific plant lectins  
CPIJ017252|conserved   0.000051   53-114   alpha-D-mannose-specific plant lectins  
CPIJ019014|conserved   0.00000129   14-119   alpha-D-mannose-specific plant lectins  
CPIJ019615|conserved   0.0000262   22-114   alpha-D-mannose-specific plant lectins  
CPIJ019731|conserved   0.000051   68-113   alpha-D-mannose-specific plant lectins  
CPIJ020329|conserved   0.0000484   12-101   alpha-D-mannose-specific plant lectins  
 
Weak hits:
CPIJ002487|conserved   0.000275   68-110   alpha-D-mannose-specific plant lectins  
  0.0993   104-182   alpha-D-mannose-specific plant lectins  
CPIJ002596|conserved   0.00173   156-170   alpha-D-mannose-specific plant lectins  
CPIJ004218|conserved   0.00416   24-106   alpha-D-mannose-specific plant lectins  
CPIJ004510|conserved   0.000417   85-174   alpha-D-mannose-specific plant lectins  
CPIJ004759|conserved   0.00199   115-147   alpha-D-mannose-specific plant lectins  
  0.0048   121-200   alpha-D-mannose-specific plant lectins  
CPIJ005447|conserved   0.000183   25-128   alpha-D-mannose-specific plant lectins  
CPIJ006131|conserved   0.000157   110-121   alpha-D-mannose-specific plant lectins  
CPIJ006956|conserved   0.000345   193-228   alpha-D-mannose-specific plant lectins  
  0.00949   208-293   alpha-D-mannose-specific plant lectins  
CPIJ007004|conserved   0.000641   60-143   alpha-D-mannose-specific plant lectins  
CPIJ007208|conserved   0.00331   250-328   alpha-D-mannose-specific plant lectins  
CPIJ008459|conserved   0.00719   45-135   alpha-D-mannose-specific plant lectins  
CPIJ008630|conserved   0.000216   48-110   alpha-D-mannose-specific plant lectins  
CPIJ008631|conserved   0.00267   348-364   alpha-D-mannose-specific plant lectins  
CPIJ009125|conserved   0.000863   4-90   alpha-D-mannose-specific plant lectins  
CPIJ009951|conserved   0.0082   142-229   alpha-D-mannose-specific plant lectins  
CPIJ009970|conserved   0.000707   90-164   alpha-D-mannose-specific plant lectins  
  0.0849   37-113   alpha-D-mannose-specific plant lectins  
CPIJ010081|conserved   0.00403   144-144   alpha-D-mannose-specific plant lectins  
  0.00532   145-145   alpha-D-mannose-specific plant lectins  
  0.00815   149-149   alpha-D-mannose-specific plant lectins  
  0.0245   143-143   alpha-D-mannose-specific plant lectins  
CPIJ012246|conserved   0.000114   74-130   alpha-D-mannose-specific plant lectins  
CPIJ012286|conserved   0.0017   185-229   alpha-D-mannose-specific plant lectins  
CPIJ013299|conserved   0.00777   19-96   alpha-D-mannose-specific plant lectins  
CPIJ013615|conserved   0.000123   102-125   alpha-D-mannose-specific plant lectins  
CPIJ013617|conserved   0.000445   174-252   alpha-D-mannose-specific plant lectins  
CPIJ013813|conserved   0.00187   25-115   alpha-D-mannose-specific plant lectins  
  0.0259   98-154   alpha-D-mannose-specific plant lectins  
CPIJ013844|conserved   0.000209   42-129   alpha-D-mannose-specific plant lectins  
CPIJ014323|conserved   0.0144   49-113   alpha-D-mannose-specific plant lectins  
CPIJ014346|conserved   0.000694   29-102   alpha-D-mannose-specific plant lectins  
CPIJ014729|conserved   0.00107   39-99   alpha-D-mannose-specific plant lectins  
CPIJ015258|conserved   0.000832   217-301   alpha-D-mannose-specific plant lectins  
CPIJ015907|conserved   0.00055   363-424   alpha-D-mannose-specific plant lectins  
CPIJ016257|conserved   0.000288   130-227   alpha-D-mannose-specific plant lectins  
  0.00115   221-266   alpha-D-mannose-specific plant lectins  
CPIJ016457|conserved   0.00283   54-144   alpha-D-mannose-specific plant lectins  
CPIJ016595|conserved   0.000537   200-286   alpha-D-mannose-specific plant lectins  
CPIJ016596|conserved   0.00345   294-353   alpha-D-mannose-specific plant lectins  
  0.0048   418-470   alpha-D-mannose-specific plant lectins  
CPIJ016799|conserved   0.000103   19-104   alpha-D-mannose-specific plant lectins  
CPIJ017312|conserved   0.00035   37-125   alpha-D-mannose-specific plant lectins  
  0.012   105-189   alpha-D-mannose-specific plant lectins  
CPIJ017428|conserved   0.000672   88-182   alpha-D-mannose-specific plant lectins  
CPIJ017800|conserved   0.0187   195-298   alpha-D-mannose-specific plant lectins  
CPIJ018266|conserved   0.000192   50-148   alpha-D-mannose-specific plant lectins  
CPIJ018584|conserved   0.00166   229-316   alpha-D-mannose-specific plant lectins  
  0.0115   172-258   alpha-D-mannose-specific plant lectins  
CPIJ018754|conserved   0.000432   32-118   alpha-D-mannose-specific plant lectins  
CPIJ018822|conserved   0.000759   6-82   alpha-D-mannose-specific plant lectins  
CPIJ018873|conserved   0.000157   64-155   alpha-D-mannose-specific plant lectins  
CPIJ018941|conserved   0.00288   47-121   alpha-D-mannose-specific plant lectins  
CPIJ018983|conserved   0.000602   244-332   alpha-D-mannose-specific plant lectins  
  0.0259   94-164   alpha-D-mannose-specific plant lectins  
CPIJ019150|conserved   0.000157   177-278   alpha-D-mannose-specific plant lectins  
CPIJ019531|conserved   0.00012   90-170   alpha-D-mannose-specific plant lectins  
CPIJ019749|pugilistDominant|protein_coding|supercont3.1835|1719|2261   0.000353   7-94   alpha-D-mannose-specific plant lectins  
CPIJ019754|conserved   0.00259   257-337   alpha-D-mannose-specific plant lectins  
  0.0302   196-284   alpha-D-mannose-specific plant lectins  

Daphnia pulex has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Dappu1|316218|NCBI_GNO_1700012   0.00000000000000393   429-534   alpha-D-mannose-specific plant lectins  
jgi|Dappu1|316304|NCBI_GNO_1700098   0.000000000000327   589-700   alpha-D-mannose-specific plant lectins  
 
Weak hits:
jgi|Dappu1|309814|NCBI_GNO_0100345   0.00144   43-92   alpha-D-mannose-specific plant lectins  

Mnemiopsis leidyi has 10 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
ML01817a-PA   2.02e-21   19-119   alpha-D-mannose-specific plant lectins  
ML020113a-PA   2.61e-24   530-631   alpha-D-mannose-specific plant lectins  
  1.13e-18   671-768   alpha-D-mannose-specific plant lectins  
ML030242a-PA   3.02e-21   6-72,108-136   alpha-D-mannose-specific plant lectins  
ML030522a-PA   4.18e-24   80-175   alpha-D-mannose-specific plant lectins  
ML055910a-PA   0.00000236   325-418   alpha-D-mannose-specific plant lectins  
ML10553a-PA   3.82e-21   218-312   alpha-D-mannose-specific plant lectins  
ML14987a-PA   1.58e-21   155-255   alpha-D-mannose-specific plant lectins  
ML204429a-PA   5.86e-22   1948-2049   alpha-D-mannose-specific plant lectins  
  1.82e-20   1087-1193   alpha-D-mannose-specific plant lectins  

Hydra vulgaris has 4 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|221108746|ref|XP_002166268.1|   3.5e-22   93-205   alpha-D-mannose-specific plant lectins  
gi|449676868|ref|XP_004208722.1|   2.95e-22   95-208   alpha-D-mannose-specific plant lectins  
gi|449676870|ref|XP_004208723.1|   3.66e-18   141-199   alpha-D-mannose-specific plant lectins  
  7.46e-16   84-167   alpha-D-mannose-specific plant lectins  

Sphaeroforma arctica JP610 has 8 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
SARC_01724T0   0.0000000000000209   1060-1169   alpha-D-mannose-specific plant lectins  
SARC_03350T0   0.0000707   264-331   alpha-D-mannose-specific plant lectins  
SARC_06554T0   0.000000919   490-559   alpha-D-mannose-specific plant lectins  
SARC_07235T0   0.00000000746   144-203   alpha-D-mannose-specific plant lectins  
  0.0000000122   92-165   alpha-D-mannose-specific plant lectins  
SARC_09502T0   0.0000000036   329-437   alpha-D-mannose-specific plant lectins  
SARC_09605T0   0.000000000102   270-349   alpha-D-mannose-specific plant lectins  
SARC_11301T0   0.0000000000343   134-211   alpha-D-mannose-specific plant lectins  
 
Weak hits:
SARC_01832T0   0.000199   661-756   alpha-D-mannose-specific plant lectins  

Capsaspora owczarzaki ATCC 30864 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
CAOG_02911T0   5.88e-19   159-256   alpha-D-mannose-specific plant lectins  

Conidiobolus coronatus NRRL28638 v1.0 has 5 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Conco1|169882|MIX4630_1_4   0.0000000000038   676-752   alpha-D-mannose-specific plant lectins  
  0.000000000168   481-610   alpha-D-mannose-specific plant lectins  
  0.000000157   73-143   alpha-D-mannose-specific plant lectins  
jgi|Conco1|171009|MIX5757_9_65   0.00000000000000419   17-112   alpha-D-mannose-specific plant lectins  
jgi|Conco1|44954|e_gw1.693.6.1   0.00000000017   1-53   alpha-D-mannose-specific plant lectins  

Mortierella verticillata NRRL 6337 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
MVEG_12413T0   0.0000000000000396   260-367   alpha-D-mannose-specific plant lectins  
MVEG_12434T0   0.00000000000153   201-322   alpha-D-mannose-specific plant lectins  

Mixia osmundae IAM 14324 v1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Mixos1|82273|fgenesh1_pg.5_#_193   0.0000000419   674-735   alpha-D-mannose-specific plant lectins  

Puccinia graminis f. sp. tritici CRL 75-36-700-3 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
PGTT_18184   0.00000196   393-498   alpha-D-mannose-specific plant lectins  

Melampsora laricis-populina has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Mellp1|87967|EuGene.00240024   0.00000000236   422-524   alpha-D-mannose-specific plant lectins  
  0.0144   604-666   alpha-D-mannose-specific plant lectins  
jgi|Mellp1|90664|EuGene.00390045   0.00000000589   389-491   alpha-D-mannose-specific plant lectins  
  0.0118   553-630   alpha-D-mannose-specific plant lectins  

Rhodotorula graminis WP1 v1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Rhoba1_1|56371|estExt_Genemark1.C_190035   0.0000000236   705-762   alpha-D-mannose-specific plant lectins  

Sphaerobolus stellatus v1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Sphst1|775012|estExt_Genemark1.C_4_t10372   0.000000124   673-733   alpha-D-mannose-specific plant lectins  
 
Weak hits:
jgi|Sphst1|264603|gm1.26493_g   0.0911   32-87   alpha-D-mannose-specific plant lectins  
jgi|Sphst1|48183|fgenesh1_pg.54_#_37   0.0288   102-139   alpha-D-mannose-specific plant lectins  
jgi|Sphst1|56369|fgenesh1_pg.403_#_3   0.0345   102-139   alpha-D-mannose-specific plant lectins  

Schizophyllum commune has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Schco1|238794|fgenesh2_pg.18_#_21   0.00000000000000605   189-293   alpha-D-mannose-specific plant lectins  
 
Weak hits:
jgi|Schco1|104443|augustus-scaffold_1.g2231   0.00835   228-305   alpha-D-mannose-specific plant lectins  

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Select to display   Genome       Domains   Proteins
No Yes ALL   47837 47837
No Yes Saccoglossus kowalevskii v3.0   2 1
No Yes Lepisosteus oculatus 76 Spotted gar 2 2
No Yes Gadus morhua 76_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 76_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 3 3
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 2 2
No Yes Poecilia formosa 76 Amazon molly 3 3
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 1 1
No Yes Astyanax mexicanus 76 Mexican tetra 2 2
No Yes Adineta vaga   2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 12 12
No Yes Daphnia pulex Common water flea 2 2
No Yes Mnemiopsis leidyi Sea walnut 10 8
No Yes Hydra vulgaris   4 3
No Yes Sphaeroforma arctica JP610   8 7
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   5 3
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   2 2
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Schizophyllum commune   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Fusarium graminearum   3 3
No Yes Nectria haematococca mpVI   7 2
No Yes Fusarium oxysporum f. sp. lycopersici 4286   3 3
No Yes Fusarium verticillioides 7600   2 2
No Yes Trichoderma asperellum CBS 433.97 v1.0   3 2
No Yes Trichoderma atroviride   2 2
No Yes Trichoderma citrinoviride v1.0   2 1
No Yes Trichoderma reesei 1.2   2 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Aspergillus zonatus v1.0   2 2
No Yes Aspergillus glaucus   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   3 3
No Yes Aspergillus flavus NRRL3357   2 2
No Yes Allomyces macrogynus ATCC 38327   5 5
No Yes Dictyostelium discoideum   5 5
No Yes Dictyostelium purpureum   10 4
No Yes Selaginella moellendorffii   230 225
No Yes Pinus taeda Loblolly pine 62 51
No Yes Picea abies Norway spruce 69 56
No Yes Eucalyptus grandis v201 Rose gum 370 345
No Yes Theobroma cacao B97-61/B2 v1 Cacao 142 127
No Yes Gossypium raimondii v221   155 141
No Yes Citrus clementina v165   155 147
No Yes Citrus sinensis v154 Sweet orange 173 160
No Yes Thellungiella halophila v173   51 48
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 82 73
No Yes Capsella rubella v183   46 44
No Yes Arabidopsis lyrata Lyrate rockcress 66 64
No Yes Arabidopsis thaliana 10 Thale cress 55 52
No Yes Carica papaya Papaya 44 40
No Yes Medicago truncatula Barrel medic 236 231
No Yes Phaseolus vulgaris v186 French bean 110 107
No Yes Glycine max v109 Soybean 164 155
No Yes Cucumis sativus v122 Cucumber 56 54
No Yes Fragaria vesca Wild strawberry 130 112
No Yes Malus domestica v196 Apple 326 293
No Yes Prunus persica v139 Peach 109 103
No Yes Linum usitatissimum v200 Flax 125 115
No Yes Manihot esculenta v147 Cassava 130 118
No Yes Populus trichocarpa v156 Black cottonwood 290 261
No Yes Vitis vinifera Wine grape 83 70
No Yes Mimulus guttatus v140 Spotted monkey flower 62 55
No Yes Solanum lycopersicum v.2.3 Tomato 102 94
No Yes Solanum tuberosum Potato 149 135
No Yes Actinidia chinensis Hongyang   84 70
No Yes Aquilegia coerulea v195   101 98
No Yes Triticum urartu 22   141 133
No Yes Triticum aestivum 22 Bread wheat 265 263
No Yes Aegilops tauschii 22   157 153
No Yes Brachypodium distachyon Stiff brome 93 93
No Yes Oryza barthii 22 African wild rice 183 132
No Yes Oryza meridionalis 22   141 126
No Yes Oryza glumaepatula 22   178 145
No Yes Oryza glaberrima African rice 109 106
No Yes Oryza punctata 22   153 122
No Yes Oryza nivara 22   188 150
No Yes Oryza brachyantha 22 Malo sina 91 87
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 155 147
No Yes Oryza sativa v193 Rice 154 146
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 87 83
No Yes Panicum virgatum v202 Switchgrass 133 128
No Yes Setaria italica v164 Foxtail millet 90 85
No Yes Zea mays subsp. mays Maize 75 74
No Yes Zea mays v181 Maize 81 80
No Yes Sorghum bicolor Sorghum 101 97
No Yes Musa balbisiana Balbis banana 89 74
No Yes Musa acuminata 22 Wild Malaysian banana 69 62
No Yes Amborella trichopoda 22   71 55
No Yes Physcomitrella patens   11 9
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 2
No Yes Chlorella vulgaris   2 2
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   2 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Ectocarpus siliculosus   3 3
No Yes Fragilariopsis cylindrus   10 8
No Yes Paramecium tetraurelia   2 2
No Yes Tetrahymena thermophila SB210 1   10 4
No Yes Symbiodinium minutum clade B1 v1.2   5 2
No Yes Naegleria gruberi   11 9
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   5 4
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Acidimicrobium ferrooxidans DSM 10331   1 1
No Yes Catenulispora acidiphila DSM 44928   4 4
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   3 3
No Yes Streptomyces flavogriseus ATCC 33331   3 3
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   2 2
No Yes Actinoplanes sp. N902-109   5 5
No Yes Actinoplanes missouriensis 431   1 1
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Mycobacterium abscessus ATCC 19977   1 1
No Yes Mycobacterium ulcerans Agy99   1 1
No Yes Mycobacterium marinum M   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Cellulomonas flavigena DSM 20109   5 2
No Yes Cellulomonas fimi ATCC 484   5 2
No Yes [Cellvibrio] gilvus ATCC 13127   4 1
No Yes Arthrobacter aurescens TC1   1 1
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Arthrobacter sp. FB24   2 1
No Yes Ruminococcus albus 7   2 2
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus mucilaginosus 3016   6 5
No Yes Chlorobium luteolum DSM 273   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   2 2
No Yes Spirochaeta smaragdinae DSM 11293   2 2
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Terriglobus roseus DSM 18391   2 1
No Yes Candidatus Saccharibacteria bacterium RAAC3_TM7_1   1 1
No Yes Geobacter daltonii FRC-32   1 1
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Corallococcus coralloides DSM 2259   2 2
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Cupriavidus metallidurans CH34   2 1
No Yes Burkholderia thailandensis E264   2 1
No Yes Burkholderia pseudomallei 1106a   2 1
No Yes Burkholderia ambifaria AMMD   2 1
No Yes Burkholderia cenocepacia HI2424   5 2
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   2 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas protegens Pf-5   4 2
No Yes Francisella philomiragia subsp. philomiragia ATCC 25017   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 139 105
No Yes Hordeum vulgare 22 Domesticated barley 252 239
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 167 156
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Streptomyces rapamycinicus NRRL 5491   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   2 2
No Yes Saccharothrix espanaensis DSM 44229   2 2
No Yes Actinoplanes friuliensis DSM 7358   4 3
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Mycobacterium sp. JDM601   1 1
No Yes Mycobacterium abscessus subsp. bolletii 50594   1 1
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Ruminococcus champanellensis 18P13   3 1
No Yes Paenibacillus mucilaginosus KNP414   2 2
No Yes Paenibacillus mucilaginosus K02   2 2
No Yes Paenibacillus larvae subsp. larvae DSM 25430   1 1
No Yes Singulisphaera acidiphila DSM 18658   2 1
No Yes Geobacter sulfurreducens PCA   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. KJ006   2 1
No Yes Burkholderia thailandensis MSMB121   2 1
No Yes Burkholderia pseudomallei MSHR305   2 1
No Yes Burkholderia pseudomallei NCTC 13179   2 1
No Yes Burkholderia pseudomallei BPC006   2 1
No Yes Burkholderia pseudomallei 1026b   2 1
No Yes Burkholderia pseudomallei 668   2 1
No Yes Burkholderia pseudomallei 1710b   2 1
No Yes Burkholderia pseudomallei K96243   2 1
No Yes Burkholderia ambifaria MC40-6   2 1
No Yes Burkholderia cenocepacia MC0-3   5 2
No Yes Burkholderia cenocepacia AU 1054   5 2
No Yes Burkholderia cepacia GG4   2 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   2 1
No Yes Xanthomonas axonopodis Xac29-1   2 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas protegens CHA0   2 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Lotus japonicus (Early assembly)   58 56
No Yes Malus x domestica (Duplicate) Apple 326 293
No Yes Ricinus communis (Early assembly) Castor bean 95 81
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   117 100
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 101 93
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 102 94
No Yes Phoenix dactylifera (Early draft) Date palm 21 20
No Yes Gadus morhua 69_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 3 3
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 2 2
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 1 1
No Yes Arabidopsis thaliana 10 Thale cress 50 47
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Combined (meta-genome)   3 3
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   6 6
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   1 1
No Yes NCBI 2017_08 genome   16960 14433
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   4 4
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   5 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   7 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   5 4
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   8 7
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   4 3
No Yes STRING v9.0.5 (STRING)   1137 1051
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   3 2
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   16394 14728
No Yes Global Ocean Sampling Expedition (GOS)   50 44
No Yes NCBI plasmid sequences (Plasmids)   9 7
No Yes NCBI viral sequences (Viral)   5 5
No Yes PDB chains (SCOP 1.75) (PDB)   13 12
No Yes Protein Data Bank (all PDB sequenc)   142 120
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   308 302
No Yes TargetDB (Targets)   2 1
No Yes UniProt viral sequences (Viral)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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