SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


P22 tailspike protein family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 9 significant domains in 9 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1clwA   0   0.000000000000383   1-554   1qq1 A:  
1qa1A   0   0.000000000000411   1-554   1qq1 A:  
1qa2A   0   0.000000000000386   1-554   1qq1 A:  
1qa3A   0   0.000000000000386   1-554   1qq1 A:  
1qq1A   0   0.000000000000296   6-559   1qq1 A:  
1qrbA   0   0.000000000000356   6-559   1qq1 A:  
1qrcA   0   0.000000000000362   6-559   1qq1 A:  
1tspA   0   0.000000000000334   6-559   1qq1 A:  
1tywA   0   0.000000000000362   1-554   1qq1 A:  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a P22 tailspike protein domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   1849 1849
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   1 1
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   1 1
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   1 1
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   1 1
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   1 1
No Yes NCBI 2017_08 genome   1511 1511
No Yes STRING v9.0.5 (STRING)   4 4
No Yes Uniprot 2018_03 genome   132 132
No Yes NCBI viral sequences (Viral)   27 27
No Yes PDB chains (SCOP 1.75) (PDB)   9 9
No Yes Protein Data Bank (all PDB sequenc)   25 25
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   92 92
No Yes The Salmonella enterica Pan-genome (meta-genome)   6 6
No Yes UniProt viral sequences (Viral)   27 27

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]