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Intein (protein splicing domain) family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 8 significant domains in 8 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1am2A   2.15e-48   0.00000000538   3-199   1am2 A:  
1dfaA   1.32e-82   0.0000000105   1-183,410-453   1gpp A:  
1dq3A   5.84e-42   0.000000208   1-129,415-454   1dq3 A:1-128,A:415-454  
1ef0A   5.12e-81   0.0000000105   6-187,414-457   1gpp A:  
1gppA   2.97e-85   0.00000000119   10-237   1gpp A:  
1jvaA   2.78e-79   0.0000000114   11-194,421-464   1gpp A:  
1mi8A   9.02e-47   0.00000015   5-155   1mi8 A:  
1um2A   4.93e-79   0.0000000114   2-183,410-453   1gpp A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   936 936
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Pichia membranifaciensv1.0   1 1
No Yes Candida tropicalis MYA-3404   1 1
No Yes Pichia stipitis CBS 6054   1 1
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   1 1
No Yes Debaromyces hansenii   1 1
No Yes Wickerhamomyces anomalus   1 1
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   1 1
No Yes Vanderwaltozyma polyspora DSM 70294   1 1
No Yes Zygosaccharomyces rouxii   1 1
No Yes Saccharomyces cerevisiae 76 Baker's yeast 1 1
No Yes Kluyveromyces lactis   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Microcystis aeruginosa NIES-843   1 1
No Yes 'Nostoc azollae' 0708   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Anabaena sp. 90   1 1
No Yes Modestobacter marinus   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Mycobacterium intracellulare ATCC 13950   1 1
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium gilvum PYR-GCK   1 1
No Yes Mycobacterium chubuense NBB4   1 1
No Yes Mycobacterium leprae Br4923   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Rhodothermus marinus DSM 4252   1 1
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Pyrococcus abyssi GE5   1 1
No Yes Pyrococcus furiosus COM1   1 1
No Yes Saccharomyces cerevisiae UC5   1 1
No Yes Saccharomyces cerevisiae YJM269   1 1
No Yes Saccharomyces cerevisiae FostersB   1 1
No Yes Saccharomyces cerevisiae FostersO   1 1
No Yes Saccharomyces cerevisiae VL3   1 1
No Yes Saccharomyces cerevisiae Vin13   1 1
No Yes Saccharomyces cerevisiae LalvinQA23   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Saccharomyces cerevisiae Sigma1278b   1 1
No Yes Saccharomyces cerevisiae W303   1 1
No Yes Saccharomyces cerevisiae JAY291   1 1
No Yes Saccharomyces cerevisiae CLIB215   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Dactylococcopsis salina PCC 8305   1 1
No Yes Arthrospira platensis NIES-39   1 1
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Cyanobacterium aponinum PCC 10605   1 1
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Mycobacterium sp. JDM601   1 1
No Yes Mycobacterium sp. KMS   1 1
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium intracellulare MOTT-64   1 1
No Yes Mycobacterium intracellulare MOTT-02   1 1
No Yes Mycobacterium gilvum Spyr1   1 1
No Yes Mycobacterium leprae TN   1 1
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Rhodothermus marinus SG0.5JP17-172   1 1
No Yes Thermococcus sp. AM4   1 1
No Yes Pyrococcus furiosus DSM 3638   1 1
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 1 1
No Yes NCBI 2017_08 genome   343 343
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   22 22
No Yes Uniprot 2018_03 genome   357 357
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   8 8
No Yes Protein Data Bank (all PDB sequenc)   17 17
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   51 51
No Yes TargetDB (Targets)   2 2

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