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Family 1 of glycosyl hydrolase family domain assignments
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PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 30 significant domains in 30 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1bgaA   1.79e-249   0.000000000613   4-441   1bgg A:  
1bggA   1.79e-249   0.000000000613   5-442   1bgg A:  
1cbgA   1.36e-285   0.0000000404   19-489   1cbg A:  
1dwaM   1.07e-208   0.000000000182   16-497   1e6q M:  
1e1fA   1.83e-245   0.00000000101   24-498   1e55 A:  
1e4iA   4.44e-250   0.00000000067   4-441   1bgg A:  
1e4mM   3.46e-209   0.000000000179   18-499   1e6q M:  
1gnxA   6.7e-272   0.000000000415   17-473   1gnx A:  
1gowA   1.96e-125   0.000000000000073   2-486   1gow A:  
1h49A   8.97e-244   0.00000000101   24-498   1e55 A:  
1hxjA   1.83e-245   0.00000000101   19-493   1e55 A:  
1myrA   5.36e-208   0.000000000697   18-499   1e6q M:  
1np2A   5.43e-242   0.0000000031   8-426   1ug6 A:  
1pbgA   1.39e-182   0.0000000000123   6-464   1pbg A:  
1qoxA   4.94e-272   0.00000000101   5-443   1qox A:  
1qvbA   2.12e-133   0.000000000000169   1-478   1qvb A:  
1tr1A   1.08e-249   0.000000000664   4-441   1bgg A:  
1ug6A   1.22e-237   0.00000000143   8-426   1ug6 A:  
1uwiA   1.82e-124   0.0000000000000859   2-486   1gow A:  
1uwsA   9.77e-129   0.00000000000028   2-478   1gow A:  
1uyqA   6.35e-251   0.000000000771   4-441   1bgg A:  
1v02A   1.03e-248   0.00000000079   76-545   1v02 A:  
1v02E   1.4e-250   0.000000000865   76-545   1v02 A:  
1v03A   5.11e-250   0.000000000918   76-545   1v02 A:  
1v08A   3.88e-244   0.000000000946   24-498   1e55 A:  
1vffA   5.22e-134   0.0000000000141   4-413   1vff A:1-423  
1wcgA   1.46e-237   0.000000000232   4-461   1wcg A:3-464  
2j78A   3.68e-271   0.00000000182   27-462   1od0 A:  
2pbgA   2.09e-177   0.000000000011   6-464   1pbg A:  
4pbgA   2.16e-178   0.0000000000123   6-464   1pbg A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   288632 288632
No Yes Homo sapiens 76_38 Human 15 9
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 8 4
No Yes Gorilla gorilla 76_3.1 Western gorilla 12 6
No Yes Pongo abelii 76_2 Sumatran orangutan 9 5
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 9 5
No Yes Papio anubis 76 Olive baboon 9 5
No Yes Macaca mulatta 76_1 Rhesus monkey 11 6
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 10 6
No Yes Otolemur garnettii 76_3 Small-eared galago 9 5
No Yes Microcebus murinus 76_1 Gray mouse lemur 7 4
No Yes Rattus norvegicus 76_5.0 Norway rat 8 5
No Yes Mus musculus 76_38 House mouse 10 6
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 9 5
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 8 4
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 8 4
No Yes Cavia porcellus 76_3 Domestic guinea pig 11 6
No Yes Oryctolagus cuniculus 76_2 Rabbit 15 7
No Yes Ochotona princeps 76 American pika 9 5
No Yes Tupaia belangeri 76 Northern tree shrew 9 5
No Yes Sus scrofa 76_10.2 Pig 13 7
No Yes Bos taurus 76_3.1 Cattle 9 5
No Yes Ovis aries 76_3.1 Sheep 9 5
No Yes Vicugna pacos 76_1 Alpaca 10 5
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 9 5
No Yes Mustela putorius furo 76_1.0 Domestic ferret 9 5
No Yes Ailuropoda melanoleuca 76_1 Giant panda 9 6
No Yes Canis familiaris 76_3.1 Dog 11 6
No Yes Felis catus 76_6.2 Domestic cat 9 5
No Yes Equus caballus 76_2 Horse 9 5
No Yes Myotis lucifugus 76_2.0 Little brown bat 9 5
No Yes Pteropus vampyrus 76_1 Large flying fox 9 5
No Yes Sorex araneus 76_1 European shrew 7 5
No Yes Erinaceus europaeus 76 Western European hedgehog 8 5
No Yes Procavia capensis 76_1 Cape rock hyrax 8 5
No Yes Loxodonta africana 76_3 African savanna elephant 11 6
No Yes Echinops telfairi 76 Small Madagascar hedgehog 10 5
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 9 5
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 6 4
No Yes Macropus eugenii 76_1.0 Tammar wallaby 9 5
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 14 7
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 9 5
No Yes Ornithorhynchus anatinus 76_5 Platypus 10 6
No Yes Saccoglossus kowalevskii v3.0   15 14
No Yes Petromyzon marinus 76_7.0 Sea lamprey 9 6
No Yes Meleagris gallopavo 76_2 Turkey 7 3
No Yes Gallus gallus 76_4 Chicken 7 3
No Yes Anas platyrhynchos 76_1.0 Mallard 8 4
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 9 5
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 8 4
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 10 6
No Yes Anolis carolinensis 76_2.0 Green anole 9 5
No Yes Xenopus laevis African clawed frog 7 7
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 12 6
No Yes Latimeria chalumnae 76_1 Coelacanth 9 5
No Yes Lepisosteus oculatus 76 Spotted gar 13 7
No Yes Gadus morhua 76_1 Atlantic cod 23 17
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 19 11
No Yes Takifugu rubripes 76_4 Torafugu 25 16
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 13 7
No Yes Oryzias latipes 76_1 Japanese medaka 10 6
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 13 7
No Yes Poecilia formosa 76 Amazon molly 13 7
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 13 9
No Yes Astyanax mexicanus 76 Mexican tetra 10 6
No Yes Danio rerio 76_9 Zebrafish 16 9
No Yes Oikopleura dioica   8 6
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 40 25
No Yes Ciona intestinalis 76 Vase tunicate 5 4
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 15 14
No Yes Adineta vaga   2 2
No Yes Octopus bimaculoides 280   1 1
No Yes Crassostrea gigas 22 Pacific oyster 1 1
No Yes Lottia gigantea Owl limpet 18 7
No Yes Capitella sp. I   5 5
No Yes Danaus plexippus OGS1.0 Monarch butterfly 27 26
No Yes Heliconius melpomene Postman butterfly 40 28
No Yes Bombyx mori Domestic silkworm 20 20
No Yes Nasonia vitripennis Jewel wasp 5 5
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 6 6
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 4 4
No Yes Linepithema humile v1.1 Argentine ant 2 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 3 3
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   2 2
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila suzukii   1 1
No Yes Drosophila yakuba 1.3   1 1
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   1 1
No Yes Drosophila melanogaster 76_5 Fruit fly 1 1
No Yes Drosophila erecta 1.3   1 1
No Yes Drosophila ananassae 1.3   1 1
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Megaselia scalaris 22   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 11 10
No Yes Culex pipiens quinquefasciatus Southern house mosquito 10 9
No Yes Anopheles darlingi 22 American malaria mosquito 6 4
No Yes Anopheles gambiae 49_3j African malaria mosquito 6 6
No Yes Tribolium castaneum 3.0 Red flour beetle 14 9
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 9 9
No Yes Rhodnius prolixus 22   5 5
No Yes Daphnia pulex Common water flea 4 4
No Yes Pristionchus pacificus   1 1
No Yes Caenorhabditis japonica   1 1
No Yes Caenorhabditis brenneri   2 2
No Yes Caenorhabditis remanei   2 2
No Yes Caenorhabditis elegans 76_235 Roundworm 2 2
No Yes Caenorhabditis briggsae 2   1 1
No Yes Thelohanellus kitauei   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 2 2
No Yes Sphaeroforma arctica JP610   1 1
No Yes Sporisorium reilianum 22   1 1
No Yes Microbotryum violaceum 22   1 1
No Yes Wallemia sebi v1.0   1 1
No Yes Sphaerobolus stellatus v1.0   4 4
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Serpula lacrymans var. lacrymans S7.9   2 2
No Yes Coniophora puteana   3 3
No Yes Hydnomerulius pinastri v2.0   3 3
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   1 1
No Yes Scleroderma citrinum Foug A v1.0   2 2
No Yes Coprinopsis cinerea okayama7 130 v3   2 2
No Yes Pleurotus ostreatus Oyster mushroom 3 3
No Yes Amanita thiersii Skay4041 v1.0   3 3
No Yes Galerina marginata v1.0   5 5
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   3 3
No Yes Stereum hirsutum FP-91666 SS1 v1.0   3 3
No Yes Heterobasidion annosum   2 2
No Yes Gloeophyllum trabeumv1.0   4 4
No Yes Punctularia strigosozonata v1.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   5 5
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Postia placenta   4 4
No Yes Wolfiporia cocos MD-104 SS10 v1.0   1 1
No Yes Fomitopsis pinicolav1.0   2 2
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 2
No Yes Phanerochaete chrysosporium RP-78 2.1   2 2
No Yes Dichomitus squalens   4 4
No Yes Trametes versicolor v1.0   2 2
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   2 2
No Yes Magnaporthe poae ATCC 64411 22   2 2
No Yes Magnaporthe grisea 70-15   2 2
No Yes Podospora anserina   1 1
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   1 1
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 3 3
No Yes Verticillium albo-atrum VaMs.102   4 4
No Yes Verticillium dahliae VdLs.17   2 2
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Glomerella graminicola 22   1 1
No Yes Fusarium graminearum   3 3
No Yes Nectria haematococca mpVI   5 5
No Yes Fusarium oxysporum f. sp. lycopersici 4286   6 6
No Yes Fusarium verticillioides 7600   6 6
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 2
No Yes Trichoderma atroviride   4 4
No Yes Trichoderma citrinoviride v1.0   2 2
No Yes Trichoderma reesei 1.2   2 2
No Yes Trichoderma virens Gv29-8   2 2
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   2 2
No Yes Trichoderma harzianum CBS 226.95 v1.0   4 4
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 2
No Yes Botrytis cinerea B05.10   3 3
No Yes Sclerotinia sclerotiorum   3 3
No Yes Didymella exigua CBS 183.55 v1.0   4 4
No Yes Leptosphaeria maculans 22   3 3
No Yes Setosphaeria turcica v1.0   3 3
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   3 3
No Yes Cochliobolus victoriae FI3 v1.0   3 3
No Yes Cochliobolus carbonum 26-R-13 v1.0   3 3
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 3 3
No Yes Alternaria brassicicola   2 2
No Yes Cochliobolus lunatus m118 v2.0   3 3
No Yes Pyrenophora teres f. teres 22   3 3
No Yes Pyrenophora tritici-repentis   3 3
No Yes Stagonospora nodorum   2 2
No Yes Mycosphaerella graminicola IPO323   2 2
No Yes Zasmidium cellare ATCC 36951 v1.0   4 4
No Yes Dothistroma septosporum   2 2
No Yes Mycosphaerella fijiensis CIRAD86   4 4
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   6 6
No Yes Ajellomyces dermatitidis SLH14081   1 1
No Yes Aspergillus zonatus v1.0   4 4
No Yes Penicillium chrysogenum Wisconsin 54-1255   3 3
No Yes Penicillium chrysogenum v1.0   3 3
No Yes Aspergillus acidus v1.0   2 2
No Yes Aspergillus fumigatus Af293   5 5
No Yes Aspergillus brasiliensis v1.0   3 3
No Yes Aspergillus nidulans FGSC A4   3 3
No Yes Aspergillus sydowii v1.0   3 3
No Yes Aspergillus versicolor v1.0   5 5
No Yes Aspergillus glaucus   1 1
No Yes Aspergillus carbonarius ITEM 5010   3 3
No Yes Neosartorya fischeri NRRL 181   5 5
No Yes Aspergillus terreus NIH2624   3 3
No Yes Aspergillus tubingensis v1.0   2 2
No Yes Aspergillus wentii v1.0   3 3
No Yes Aspergillus oryzae RIB40   3 3
No Yes Aspergillus niger 22   3 3
No Yes Aspergillus niger ATCC 1015   3 3
No Yes Aspergillus flavus NRRL3357   3 3
No Yes Aspergillus clavatus NRRL 1   3 3
No Yes Penicillium marneffei ATCC 18224   3 3
No Yes Tuber melanosporum Mel28 22   2 2
No Yes Tuber melanosporum Vittad Perigord truffle 2 2
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   1 1
No Yes Candida guilliermondii ATCC 6260   1 1
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   1 1
No Yes Selaginella moellendorffii   36 36
No Yes Pinus taeda Loblolly pine 77 70
No Yes Picea abies Norway spruce 34 32
No Yes Eucalyptus grandis v201 Rose gum 52 52
No Yes Theobroma cacao B97-61/B2 v1 Cacao 29 25
No Yes Gossypium raimondii v221   51 50
No Yes Citrus clementina v165   45 45
No Yes Citrus sinensis v154 Sweet orange 61 61
No Yes Thellungiella halophila v173   62 62
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 79 77
No Yes Capsella rubella v183   44 43
No Yes Arabidopsis lyrata Lyrate rockcress 53 53
No Yes Arabidopsis thaliana 10 Thale cress 71 71
No Yes Carica papaya Papaya 24 24
No Yes Medicago truncatula Barrel medic 88 88
No Yes Phaseolus vulgaris v186 French bean 63 62
No Yes Glycine max v109 Soybean 73 71
No Yes Cucumis sativus v122 Cucumber 38 38
No Yes Fragaria vesca Wild strawberry 34 30
No Yes Malus domestica v196 Apple 90 89
No Yes Prunus persica v139 Peach 70 70
No Yes Linum usitatissimum v200 Flax 57 56
No Yes Manihot esculenta v147 Cassava 60 60
No Yes Populus trichocarpa v156 Black cottonwood 46 45
No Yes Vitis vinifera Wine grape 41 35
No Yes Mimulus guttatus v140 Spotted monkey flower 22 22
No Yes Solanum lycopersicum v.2.3 Tomato 22 21
No Yes Solanum tuberosum Potato 28 28
No Yes Actinidia chinensis Hongyang   15 12
No Yes Aquilegia coerulea v195   140 140
No Yes Triticum urartu 22   45 45
No Yes Triticum aestivum 22 Bread wheat 124 123
No Yes Aegilops tauschii 22   43 42
No Yes Brachypodium distachyon Stiff brome 38 38
No Yes Oryza barthii 22 African wild rice 73 55
No Yes Oryza meridionalis 22   68 52
No Yes Oryza glumaepatula 22   62 53
No Yes Oryza glaberrima African rice 37 37
No Yes Oryza punctata 22   74 56
No Yes Oryza nivara 22   64 56
No Yes Oryza brachyantha 22 Malo sina 34 34
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 74 74
No Yes Oryza sativa v193 Rice 74 74
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 29 29
No Yes Panicum virgatum v202 Switchgrass 82 82
No Yes Setaria italica v164 Foxtail millet 43 43
No Yes Zea mays subsp. mays Maize 61 61
No Yes Zea mays v181 Maize 63 62
No Yes Sorghum bicolor Sorghum 41 39
No Yes Musa balbisiana Balbis banana 28 24
No Yes Musa acuminata 22 Wild Malaysian banana 28 27
No Yes Amborella trichopoda 22   26 26
No Yes Physcomitrella patens   13 13
No Yes Coccomyxa subellipsoidea sp. C-169 v2   8 8
No Yes Asterochloris sp. Cgr/DA1pho v1.0   6 6
No Yes Chlorella variabilis sp. NC64A   2 2
No Yes Chlorella vulgaris   7 7
No Yes Volvox carteri f. nagariensis   3 3
No Yes Volvox carteri v199   3 3
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Ostreococcus sp. RCC809   1 1
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   1 1
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Cyanophora paradoxa   1 1
No Yes Ectocarpus siliculosus   3 3
No Yes Aureococcus anophagefferens   1 1
No Yes Albugo laibachii 22   1 1
No Yes Pythium iwayamai DAOM BR242034 22   6 6
No Yes Pythium arrhenomanes ATCC 12531 22   8 8
No Yes Pythium ultimum v1.7-2   8 8
No Yes Pythium aphanidermatum DAOM BR444 22   2 2
No Yes Pythium irregulare DAOM BR486 22   8 8
No Yes Pythium vexans DAOM BR484 22   5 5
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 16 16
No Yes Phytophthora sojae 1.1   18 18
No Yes Phytophthora infestans T30-4   16 16
No Yes Phytophthora capsici   14 14
No Yes Hyaloperonospora arabidopsidis 22   2 2
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Fragilariopsis cylindrus   2 2
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Plasmodium yoelii ssp. yoelii 1   1 1
No Yes Symbiodinium minutum clade B1 v1.2   9 9
No Yes Naegleria gruberi   1 1
No Yes Trichomonas vaginalis   2 2
No Yes Emiliania huxleyi CCMP1516   11 11
No Yes Thermobaculum terrenum ATCC BAA-798   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Microcoleus sp. PCC 7113   2 2
No Yes Gloeocapsa sp. PCC 7428   2 2
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Mesoplasma florum L1   9 9
No Yes Mycoplasma leachii 99/014/6   1 1
No Yes Mycoplasma mycoides subsp. capri LC str. 95010   1 1
No Yes Mycoplasma penetrans HF-2   2 2
No Yes Conexibacter woesei DSM 14684   1 1
No Yes Olsenella uli DSM 7084   1 1
No Yes Atopobium parvulum DSM 20469   1 1
No Yes Coriobacterium glomerans PW2   10 10
No Yes Rubrobacter xylanophilus DSM 9941   1 1
No Yes Ilumatobacter coccineus   1 1
No Yes Thermobispora bispora DSM 43833   5 5
No Yes Nakamurella multipartita DSM 44233   5 5
No Yes Acidothermus cellulolyticus 11B   1 1
No Yes Modestobacter marinus   2 2
No Yes Kineococcus radiotolerans SRS30216   2 2
No Yes Catenulispora acidiphila DSM 44928   3 3
No Yes Stackebrandtia nassauensis DSM 44728   2 2
No Yes Frankia sp. EAN1pec   3 3
No Yes Thermobifida fusca YX   2 2
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   3 3
No Yes Thermomonospora curvata DSM 43183   3 3
No Yes Streptosporangium roseum DSM 43021   5 5
No Yes Kitasatospora setae KM-6054   4 4
No Yes Streptomyces coelicolor A3(2)   5 5
No Yes Streptomyces sp. PAMC26508   5 5
No Yes Streptomyces flavogriseus ATCC 33331   5 5
No Yes Streptomyces sp. SirexAA-E   6 6
No Yes Streptomyces griseus subsp. griseus NBRC 13350   7 7
No Yes Streptomyces bingchenggensis BCW-1   3 3
No Yes Streptomyces violaceusniger Tu 4113   3 3
No Yes Streptomyces avermitilis MA-4680   3 3
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces scabiei 87.22   5 5
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   5 5
No Yes Actinosynnema mirum DSM 43827   3 3
No Yes Saccharopolyspora erythraea NRRL 2338   3 3
No Yes Amycolatopsis mediterranei U32   6 6
No Yes Kribbella flavida DSM 17836   5 5
No Yes Nocardioides sp. JS614   2 2
No Yes Propionibacterium acnes SK137   1 1
No Yes Microlunatus phosphovorus NM-1   2 2
No Yes Salinispora arenicola CNS-205   2 2
No Yes Salinispora tropica CNB-440   3 3
No Yes Verrucosispora maris AB-18-032   5 5
No Yes Micromonospora sp. L5   6 6
No Yes Micromonospora aurantiaca ATCC 27029   5 5
No Yes Actinoplanes sp. N902-109   3 3
No Yes Actinoplanes sp. SE50/110   4 4
No Yes Actinoplanes missouriensis 431   4 4
No Yes Segniliparus rotundus DSM 44985   1 1
No Yes Gordonia sp. KTR9   1 1
No Yes Gordonia polyisoprenivorans VH2   1 1
No Yes Gordonia bronchialis DSM 43247   2 2
No Yes Rhodococcus jostii RHA1   1 1
No Yes Rhodococcus equi 103S   2 2
No Yes Rhodococcus opacus B4   1 1
No Yes Rhodococcus erythropolis PR4   2 2
No Yes Nocardia cyriacigeorgica GUH-2   1 1
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Mycobacterium massiliense str. GO 06   1 1
No Yes Mycobacterium abscessus ATCC 19977   1 1
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium gilvum PYR-GCK   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Corynebacterium resistens DSM 45100   1 1
No Yes Corynebacterium kroppenstedtii DSM 44385   2 2
No Yes Corynebacterium urealyticum DSM 7109   1 1
No Yes Corynebacterium jeikeium K411   1 1
No Yes Corynebacterium glutamicum R   2 2
No Yes Sanguibacter keddieii DSM 10542   3 3
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Microbacterium testaceum StLB037   2 2
No Yes Clavibacter michiganensis subsp. michiganensis NCPPB 382   4 4
No Yes Jonesia denitrificans DSM 20603   2 2
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Isoptericola variabilis 225   2 2
No Yes Xylanimonas cellulosilytica DSM 15894   2 2
No Yes Cellulomonas flavigena DSM 20109   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   2 2
No Yes Arthrobacter phenanthrenivorans Sphe3   4 4
No Yes Arthrobacter chlorophenolicus A6   4 4
No Yes Arthrobacter aurescens TC1   2 2
No Yes Arthrobacter arilaitensis Re117   1 1
No Yes Rothia mucilaginosa DY-18   1 1
No Yes Rothia dentocariosa ATCC 17931   1 1
No Yes Arthrobacter sp. Rue61a   3 3
No Yes Arthrobacter sp. FB24   3 3
No Yes Bifidobacterium animalis subsp. lactis Bl-04   1 1
No Yes Bifidobacterium dentium Bd1   2 2
No Yes Bifidobacterium breve ACS-071-V-Sch8b   2 2
No Yes Bifidobacterium bifidum S17   1 1
No Yes Bifidobacterium adolescentis ATCC 15703   1 1
No Yes Actinomyces sp. F0330   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   2 2
No Yes Anaerolinea thermophila UNI-1   2 2
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Sphaerobacter thermophilus DSM 20745   1 1
No Yes Herpetosiphon aurantiacus DSM 785   2 2
No Yes Roseiflexus sp. RS-1   2 2
No Yes Roseiflexus castenholzii DSM 13941   2 2
No Yes Chloroflexus sp. MS-G   1 1
No Yes Chloroflexus sp. Y-400-fl   2 2
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Chloroflexus aurantiacus J-10-fl   2 2
No Yes Truepera radiovictrix DSM 17093   1 1
No Yes Deinococcus gobiensis I-0   1 1
No Yes Deinococcus deserti VCD115   1 1
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Meiothermus ruber DSM 1279   2 2
No Yes Thermus sp. CCB_US3_UF1   1 1
No Yes Thermus thermophilus HB27   1 1
No Yes Anaerococcus prevotii DSM 20548   2 2
No Yes Megasphaera elsdenii DSM 20460   1 1
No Yes Selenomonas ruminantium subsp. lactilytica TAM6421   6 6
No Yes Erysipelothrix rhusiopathiae str. Fujisawa   1 1
No Yes Symbiobacterium thermophilum IAM 14863   1 1
No Yes Clostridium clariflavum DSM 19732   1 1
No Yes Clostridium cellulolyticum H10   1 1
No Yes Clostridium thermocellum ATCC 27405   2 2
No Yes Ethanoligenens harbinense YUAN-3   4 4
No Yes Faecalibacterium prausnitzii   4 4
No Yes Ruminococcus sp.   1 1
No Yes Sulfobacillus acidophilus DSM 10332   2 2
No Yes butyrate-producing bacterium SM4/1   1 1
No Yes Eubacterium eligens ATCC 27750   1 1
No Yes Clostridium difficile 630   9 9
No Yes Clostridium saccharolyticum WM1   7 7
No Yes Clostridium phytofermentans ISDg   1 1
No Yes Clostridium lentocellum DSM 5427   2 2
No Yes [Ruminococcus] obeum   1 1
No Yes [Ruminococcus] torques   1 1
No Yes Eubacterium rectale M104/1   1 1
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Coprococcus sp. ART55/1   2 2
No Yes Roseburia hominis A2-183   3 3
No Yes Roseburia intestinalis   1 1
No Yes Butyrivibrio proteoclasticus B316   1 1
No Yes Butyrivibrio fibrisolvens   2 2
No Yes Candidatus Arthromitus sp. SFB-mouse-Japan   2 2
No Yes Clostridium sp. BNL1100   1 1
No Yes Clostridium beijerinckii NCIMB 8052   11 11
No Yes Clostridium perfringens ATCC 13124   1 1
No Yes Clostridium cellulovorans 743B   6 6
No Yes Clostridium botulinum A str. ATCC 3502   2 2
No Yes Clostridium acetobutylicum ATCC 824   7 7
No Yes Caldicellulosiruptor obsidiansis OB47   1 1
No Yes Caldicellulosiruptor kronotskyensis 2002   1 1
No Yes Caldicellulosiruptor hydrothermalis 108   2 2
No Yes Caldicellulosiruptor owensensis OL   1 1
No Yes Caldicellulosiruptor lactoaceticus 6A   1 1
No Yes Caldicellulosiruptor kristjanssonii 177R1B   1 1
No Yes Caldicellulosiruptor saccharolyticus DSM 8903   1 1
No Yes Caldicellulosiruptor bescii DSM 6725   1 1
No Yes Thermoanaerobacterium xylanolyticum LX-11   2 2
No Yes Thermoanaerobacterium thermosaccharolyticum DSM 571   2 2
No Yes Tepidanaerobacter acetatoxydans Re1   3 3
No Yes Thermoanaerobacter tengcongensis MB4   2 2
No Yes Thermoanaerobacter mathranii subsp. mathranii str. A3   3 3
No Yes Thermoanaerobacter pseudethanolicus ATCC 33223   3 3
No Yes Thermoanaerobacter sp. X514   1 1
No Yes Thermoanaerobacter italicus Ab9   2 2
No Yes Thermoanaerobacter wiegelii Rt8.B1   2 2
No Yes Thermoanaerobacter brockii subsp. finnii Ako-1   3 3
No Yes Halothermothrix orenii H 168   2 2
No Yes Halanaerobium hydrogeniformans   1 1
No Yes Carnobacterium sp. 17-4   7 7
No Yes Carnobacterium sp. WN1359   9 9
No Yes Aerococcus urinae ACS-120-V-Col10a   1 1
No Yes Tetragenococcus halophilus NBRC 12172   10 10
No Yes Melissococcus plutonius DAT561   5 5
No Yes Enterococcus sp. 7L76   9 9
No Yes Enterococcus hirae ATCC 9790   11 11
No Yes Enterococcus faecium Aus0004   10 10
No Yes Enterococcus faecalis 62   8 8
No Yes Oenococcus oeni PSU-1   4 4
No Yes Leuconostoc sp. C2   2 2
No Yes Leuconostoc kimchii IMSNU 11154   2 2
No Yes Leuconostoc citreum KM20   5 5
No Yes Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293   3 3
No Yes Leuconostoc gasicomitatum LMG 18811   3 3
No Yes Lactobacillus casei ATCC 334   5 5
No Yes Lactobacillus kefiranofaciens ZW3   1 1
No Yes Lactobacillus crispatus ST1   7 7
No Yes Lactobacillus rhamnosus Lc 705   8 8
No Yes Lactobacillus johnsonii FI9785   5 5
No Yes Lactobacillus salivarius CECT 5713   1 1
No Yes Lactobacillus ruminis ATCC 27782   4 4
No Yes Lactobacillus amylovorus GRL1118   5 5
No Yes Lactobacillus sakei subsp. sakei 23K   2 2
No Yes Lactobacillus gasseri ATCC 33323   7 7
No Yes Lactobacillus plantarum JDM1   11 11
No Yes Lactobacillus helveticus DPC 4571   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365   1 1
No Yes Lactobacillus brevis ATCC 367   1 1
No Yes Lactobacillus acidophilus 30SC   5 5
No Yes Pediococcus claussenii ATCC BAA-344   4 4
No Yes Pediococcus pentosaceus ATCC 25745   5 5
No Yes Lactococcus garvieae ATCC 49156   7 7
No Yes Lactococcus lactis subsp. cremoris MG1363   7 7
No Yes Streptococcus sp. I-P16   2 2
No Yes Streptococcus sp. I-G2   3 3
No Yes Streptococcus intermedius JTH08   4 4
No Yes Streptococcus gallolyticus UCN34   11 11
No Yes Streptococcus pseudopneumoniae IS7493   4 4
No Yes Streptococcus pasteurianus ATCC 43144   13 13
No Yes Streptococcus equi subsp. equi 4047   3 3
No Yes Streptococcus dysgalactiae subsp. equisimilis GGS_124   5 5
No Yes Streptococcus infantarius subsp. infantarius CJ18   4 4
No Yes Streptococcus macedonicus ACA-DC 198   3 3
No Yes Streptococcus mitis B6   2 2
No Yes Streptococcus uberis 0140J   12 12
No Yes Streptococcus parauberis KCTC 11537   9 9
No Yes Streptococcus parasanguinis ATCC 15912   4 4
No Yes Streptococcus pyogenes str. Manfredo   4 4
No Yes Streptococcus pneumoniae P1031   5 5
No Yes Streptococcus agalactiae A909   2 2
No Yes Streptococcus mutans NN2025   4 4
No Yes Streptococcus suis P1/7   4 4
No Yes Streptococcus sanguinis SK36   4 4
No Yes Streptococcus salivarius 57.I   2 2
No Yes Streptococcus oralis Uo5   2 2
No Yes Streptococcus gordonii str. Challis substr. CH1   5 5
No Yes Exiguobacterium sp. MH3   4 4
No Yes Exiguobacterium sp. AT1b   7 7
No Yes Exiguobacterium sibiricum 255-15   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446   1 1
No Yes Paenibacillus sp. JDR-2   1 1
No Yes Paenibacillus terrae HPL-003   17 17
No Yes Paenibacillus mucilaginosus 3016   4 4
No Yes Paenibacillus polymyxa M1   10 10
No Yes Listeria welshimeri serovar 6b str. SLCC5334   10 10
No Yes Listeria innocua Clip11262   9 9
No Yes Listeria seeligeri serovar 1/2b str. SLCC3954   9 9
No Yes Listeria monocytogenes serotype 4b str. CLIP 80459   10 10
No Yes Listeria ivanovii subsp. ivanovii PAM 55   10 10
No Yes Geobacillus thermoglucosidasius C56-YS93   2 2
No Yes Oceanobacillus iheyensis HTE831   2 2
No Yes Anoxybacillus flavithermus WK1   1 1
No Yes Geobacillus thermoleovorans CCB_US3_UF5   4 4
No Yes Geobacillus kaustophilus HTA426   3 3
No Yes Geobacillus sp. GHH01   2 2
No Yes Geobacillus thermodenitrificans NG80-2   3 3
No Yes Halobacillus halophilus DSM 2266   1 1
No Yes Bacillus sp. JS   3 3
No Yes Bacillus sp. 1NLA3E   1 1
No Yes Bacillus amyloliquefaciens FZB42   5 5
No Yes Bacillus atrophaeus 1942   2 2
No Yes Bacillus subtilis subsp. subtilis str. 168   4 4
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   6 6
No Yes Bacillus halodurans C-125   3 3
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus pseudofirmus OF4   1 1
No Yes Bacillus clausii KSM-K16   3 3
No Yes Bacillus cellulosilyticus DSM 2522   1 1
No Yes Bacillus pumilus SAFR-032   7 7
No Yes Bacillus megaterium DSM 319   1 1
No Yes Bacillus coagulans 2-6   1 1
No Yes Staphylococcus pseudintermedius HKU10-03   2 2
No Yes Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305   1 1
No Yes Staphylococcus lugdunensis HKU09-01   2 2
No Yes Staphylococcus haemolyticus JCSC1435   1 1
No Yes Staphylococcus epidermidis RP62A   1 1
No Yes Staphylococcus carnosus subsp. carnosus TM300   1 1
No Yes Staphylococcus aureus subsp. aureus JH1   2 2
No Yes Staphylococcus aureus   2 2
No Yes Melioribacter roseus P3M   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Fibrella aestuarina   1 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Cytophaga hutchinsonii ATCC 33406   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Pedobacter saltans DSM 12145   1 1
No Yes Pedobacter heparinus DSM 2366   1 1
No Yes Sphingobacterium sp. 21   1 1
No Yes Zunongwangia profunda SM-A87   1 1
No Yes Zobellia galactanivorans   1 1
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Flavobacterium johnsoniae UW101   1 1
No Yes Simkania negevensis Z   1 1
No Yes Phycisphaera mikurensis NBRC 102666   1 1
No Yes Methylacidiphilum infernorum V4   1 1
No Yes Turneriella parva DSM 21527   3 3
No Yes Brachyspira murdochii DSM 12563   2 2
No Yes Brachyspira intermedia PWS/A   1 1
No Yes Brachyspira pilosicoli 95/1000   2 2
No Yes Brachyspira hyodysenteriae WA1   1 1
No Yes Sphaerochaeta pleomorpha str. Grapes   1 1
No Yes Sphaerochaeta globus str. Buddy   1 1
No Yes Sphaerochaeta coccoides DSM 17374   2 2
No Yes Spirochaeta caldaria DSM 7334   1 1
No Yes Treponema azotonutricium ZAS-9   1 1
No Yes Treponema primitia ZAS-2   4 4
No Yes Treponema brennaborense DSM 12168   1 1
No Yes Treponema denticola ATCC 35405   1 1
No Yes Spirochaeta africana DSM 8902   2 2
No Yes Spirochaeta thermophila DSM 6192   1 1
No Yes Marinitoga piezophila KA3   3 3
No Yes Petrotoga mobilis SJ95   1 1
No Yes Mesotoga prima MesG1.Ag.4.2   4 4
No Yes Kosmotoga olearia TBF 19.5.1   2 2
No Yes Fervidobacterium pennivorans DSM 9078   2 2
No Yes Fervidobacterium nodosum Rt17-B1   2 2
No Yes Thermosipho melanesiensis BI429   1 1
No Yes Thermosipho africanus TCF52B   2 2
No Yes Thermotoga lettingae TMO   2 2
No Yes Thermotoga thermarum DSM 5069   1 1
No Yes Thermotoga sp. RQ2   1 1
No Yes Thermotoga naphthophila RKU-10   1 1
No Yes Thermotoga petrophila RKU-1   1 1
No Yes Thermotoga neapolitana DSM 4359   1 1
No Yes Dictyoglomus turgidum DSM 6724   2 2
No Yes Dictyoglomus thermophilum H-6-12   2 2
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Granulicella mallensis MP5ACTX8   3 3
No Yes Candidatus Koribacter versatilis Ellin345   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Thermodesulfovibrio yellowstonii DSM 11347   1 1
No Yes Streptobacillus moniliformis DSM 12112   2 2
No Yes Sebaldella termitidis ATCC 33386   10 10
No Yes Leptotrichia buccalis C-1013-b   3 3
No Yes candidate division WWE3 bacterium RAAC2_WWE3_1   1 1
No Yes Candidatus Saccharibacteria bacterium RAAC3_TM7_1   1 1
No Yes Candidatus Saccharimonas aalborgensis   1 1
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Desulfobulbus propionicus DSM 2032   1 1
No Yes Babela massiliensis   2 2
No Yes Haliangium ochraceum DSM 14365   2 2
No Yes Sorangium cellulosum 'So ce 56'   4 4
No Yes Stigmatella aurantiaca DW4/3-1   4 4
No Yes Corallococcus coralloides DSM 2259   2 2
No Yes Myxococcus xanthus DK 1622   2 2
No Yes Myxococcus fulvus HW-1   2 2
No Yes Chromobacterium violaceum ATCC 12472   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Burkholderia sp. CCGE1002   2 2
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Rhodoferax ferrireducens T118   2 2
No Yes Caulobacter sp. K31   3 3
No Yes Caulobacter crescentus NA1000   1 1
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Novosphingobium sp. PP1Y   3 3
No Yes Novosphingobium aromaticivorans DSM 12444   2 2
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Pseudovibrio sp. FO-BEG1   1 1
No Yes Jannaschia sp. CCS1   1 1
No Yes Ruegeria sp. TM1040   1 1
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Ketogulonigenium vulgarum WSH-001   1 1
No Yes Roseobacter litoralis Och 149   1 1
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Rhodospirillum photometricum DSM 122   1 1
No Yes Magnetospirillum magneticum AMB-1   2 2
No Yes Azospirillum lipoferum 4B   4 4
No Yes Azospirillum sp. B510   4 4
No Yes Azospirillum brasilense Sp245   4 4
No Yes alpha proteobacterium HIMB59   1 1
No Yes Starkeya novella DSM 506   1 1
No Yes Ochrobactrum anthropi ATCC 49188   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium radiobacter K84   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Agrobacterium vitis S4   2 2
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Bradyrhizobium japonicum USDA 110   3 3
No Yes Bradyrhizobium sp. ORS 278   2 2
No Yes Saccharophagus degradans 2-40   2 2
No Yes Actinobacillus succinogenes 130Z   1 1
No Yes Tolumonas auensis DSM 9187   6 6
No Yes Aeromonas veronii B565   2 2
No Yes Aeromonas salmonicida subsp. salmonicida A449   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   1 1
No Yes Aliivibrio salmonicida LFI1238   1 1
No Yes Vibrio fischeri MJ11   2 2
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio harveyi ATCC BAA-1116   2 2
No Yes Vibrio parahaemolyticus RIMD 2210633   1 1
No Yes Vibrio splendidus LGP32   2 2
No Yes Vibrio anguillarum 775   1 1
No Yes Vibrio furnissii NCTC 11218   1 1
No Yes Vibrio vulnificus MO6-24/O   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Photobacterium profundum SS9   1 1
No Yes Psychromonas ingrahamii 37   1 1
No Yes Shewanella piezotolerans WP3   1 1
No Yes Shewanella denitrificans OS217   1 1
No Yes Shewanella baltica OS185   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella amazonensis SB2B   1 1
No Yes Shewanella violacea DSS12   1 1
No Yes Shewanella frigidimarina NCIMB 400   1 1
No Yes Colwellia psychrerythraea 34H   1 1
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Alteromonas sp. SN2   2 2
No Yes Alteromonas macleodii str. 'Deep ecotype'   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Marinomonas posidonica IVIA-Po-181   1 1
No Yes Marinomonas sp. MWYL1   1 1
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Methylococcus capsulatus str. Bath   1 1
No Yes Rhodanobacter denitrificans   1 1
No Yes Allochromatium vinosum DSM 180   1 1
No Yes Thiocystis violascens DSM 198   2 2
No Yes Photorhabdus asymbiotica   1 1
No Yes Photorhabdus luminescens subsp. laumondii TTO1   2 2
No Yes Providencia stuartii MRSN 2154   2 2
No Yes Edwardsiella tarda EIB202   2 2
No Yes Rahnella sp. Y9602   6 6
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   5 5
No Yes Yersinia pseudotuberculosis IP 31758   1 1
No Yes Yersinia pestis Pestoides F   1 1
No Yes Yersinia enterocolitica subsp. enterocolitica 8081   6 6
No Yes Serratia sp. AS12   7 7
No Yes Serratia sp. ATCC 39006   5 5
No Yes Serratia plymuthica AS9   7 7
No Yes Serratia proteamaculans 568   5 5
No Yes Dickeya dadantii Ech703   7 7
No Yes Dickeya zeae Ech1591   5 5
No Yes Pectobacterium wasabiae WPP163   7 7
No Yes Pectobacterium sp. SCC3193   8 8
No Yes Pectobacterium atrosepticum SCRI1043   9 9
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   10 10
No Yes Pantoea sp. At-9b   7 7
No Yes Pantoea vagans C9-1   3 3
No Yes Pantoea ananatis LMG 20103   5 5
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia billingiae Eb661   4 4
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   2 2
No Yes Escherichia blattae DSM 4481   1 1
No Yes Cronobacter turicensis z3032   6 6
No Yes Cronobacter sakazakii ES15   6 6
No Yes Enterobacteriaceae bacterium strain FGI 57   6 6
No Yes Shigella sonnei Ss046   3 3
No Yes Shigella flexneri 5 str. 8401   3 3
No Yes Shigella dysenteriae Sd197   1 1
No Yes Shigella boydii CDC 3083-94   2 2
No Yes Salmonella bongori NCTC 12419   2 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594   2 2
No Yes Klebsiella oxytoca E718   9 9
No Yes Klebsiella variicola At-22   9 9
No Yes Klebsiella pneumoniae NTUH-K2044   8 8
No Yes Enterobacter aerogenes KCTC 2190   7 7
No Yes Escherichia fergusonii ATCC 35469   4 4
No Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG'   3 3
No Yes Enterobacter sp. R4-368   9 9
No Yes Enterobacter sp. 638   8 8
No Yes Enterobacter asburiae LF7a   8 8
No Yes Enterobacter cloacae subsp. dissolvens SDM   7 7
No Yes Citrobacter rodentium ICC168   2 2
No Yes Citrobacter koseri ATCC BAA-895   3 3
No Yes Acidilobus saccharovorans 345-15   1 1
No Yes Ignisphaera aggregans DSM 17230   2 2
No Yes Thermosphaera aggregans DSM 11486   1 1
No Yes Staphylothermus hellenicus DSM 12710   2 2
No Yes Staphylothermus marinus F1   1 1
No Yes Desulfurococcus fermentans DSM 16532   1 1
No Yes Desulfurococcus kamchatkensis 1221n   1 1
No Yes Acidianus hospitalis W1   1 1
No Yes Sulfolobus tokodaii str. 7   1 1
No Yes Sulfolobus islandicus Y.N.15.51   1 1
No Yes Sulfolobus solfataricus P2   1 1
No Yes Sulfolobus acidocaldarius DSM 639   1 1
No Yes Thermofilum sp. 1910b   2 2
No Yes Thermofilum pendens Hrk 5   2 2
No Yes Vulcanisaeta moutnovskia 768-28   1 1
No Yes Vulcanisaeta distributa DSM 14429   1 1
No Yes Caldivirga maquilingensis IC-167   3 3
No Yes Thermoproteus uzoniensis 768-20   1 1
No Yes Thermococcus sp. 4557   1 1
No Yes Thermococcus kodakarensis KOD1   2 2
No Yes Thermococcus sibiricus MM 739   3 3
No Yes Thermococcus barophilus MP   1 1
No Yes Pyrococcus sp. ST04   1 1
No Yes Pyrococcus horikoshii OT3   2 2
No Yes Pyrococcus abyssi GE5   2 2
No Yes Pyrococcus furiosus COM1   4 4
No Yes Thermoplasma volcanium GSS1   1 1
No Yes Thermoplasma acidophilum DSM 1728   1 1
No Yes Picrophilus torridus DSM 9790   2 2
No Yes Aciduliprofundum boonei T469   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 11 7
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 1 1
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 6 6
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 2 2
No Yes Ajellomyces dermatitidis ER-3   1 1
No Yes Aspergillus fumigatus A1163   5 5
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 27 25
No Yes Hordeum vulgare 22 Domesticated barley 99 99
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 42 41
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Mesoplasma florum W37   8 8
No Yes Spiroplasma syrphidicola EA-1   2 2
No Yes Spiroplasma diminutum CUAS-1   4 4
No Yes Spiroplasma chrysopicola DF-1   2 2
No Yes Spiroplasma taiwanense CT-1   1 1
No Yes Spiroplasma apis B31   4 4
No Yes Mycoplasma leachii PG50   1 1
No Yes Mycoplasma mycoides subsp. mycoides SC str. Gladysdale   1 1
No Yes Mycoplasma mycoides subsp. mycoides SC str. PG1   1 1
No Yes Mycoplasma fermentans JER   1 1
No Yes Frankia sp. EuI1c   3 3
No Yes Nocardiopsis alba ATCC BAA-2165   2 2
No Yes Streptomyces albus J1074   4 4
No Yes Streptomyces rapamycinicus NRRL 5491   2 2
No Yes Streptomyces davawensis JCM 4913   3 3
No Yes Streptomyces fulvissimus DSM 40593   6 6
No Yes Streptomyces venezuelae ATCC 10712   5 5
No Yes Streptomyces collinus Tu 365   3 3
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   5 5
No Yes Saccharothrix espanaensis DSM 44229   4 4
No Yes Amycolatopsis mediterranei RB   6 6
No Yes Amycolatopsis mediterranei S699   6 6
No Yes Amycolatopsis mediterranei S699   6 6
No Yes Amycolatopsis orientalis HCCB10007   7 7
No Yes Propionibacterium acnes ATCC 11828   1 1
No Yes Propionibacterium acnes TypeIA2 P.acn31   1 1
No Yes Propionibacterium acnes TypeIA2 P.acn17   1 1
No Yes Propionibacterium acnes TypeIA2 P.acn33   1 1
No Yes Propionibacterium acnes C1   1 1
No Yes Propionibacterium acnes HL096PA1   1 1
No Yes Propionibacterium acnes 6609   1 1
No Yes Propionibacterium acnes 266   1 1
No Yes Propionibacterium acnes KPA171202   1 1
No Yes Propionibacterium acidipropionici ATCC 4875   2 2
No Yes Actinoplanes friuliensis DSM 7358   3 3
No Yes Rhodococcus erythropolis CCM2595   2 2
No Yes Nocardia brasiliensis ATCC 700358   3 3
No Yes Mycobacterium abscessus subsp. bolletii 50594   1 1
No Yes Mycobacterium gilvum Spyr1   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Corynebacterium urealyticum DSM 7111   1 1
No Yes Corynebacterium callunae DSM 20147   2 2
No Yes Corynebacterium glutamicum SCgG2   2 2
No Yes Corynebacterium glutamicum SCgG1   2 2
No Yes Clavibacter michiganensis subsp. sepedonicus   2 2
No Yes Clavibacter michiganensis subsp. nebraskensis NCPPB 2581   2 2
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   1 1
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   1 1
No Yes Bifidobacterium animalis subsp. animalis ATCC 25527   1 1
No Yes Bifidobacterium animalis subsp. lactis Bl12   1 1
No Yes Bifidobacterium animalis subsp. lactis B420   1 1
No Yes Bifidobacterium animalis subsp. lactis ATCC 27673   1 1
No Yes Bifidobacterium animalis subsp. lactis BLC1   1 1
No Yes Bifidobacterium animalis subsp. lactis CNCM I-2494   1 1
No Yes Bifidobacterium animalis subsp. lactis Bi-07   1 1
No Yes Bifidobacterium animalis subsp. lactis V9   1 1
No Yes Bifidobacterium animalis subsp. lactis DSM 10140   1 1
No Yes Bifidobacterium animalis subsp. lactis BB-12   1 1
No Yes Bifidobacterium animalis subsp. lactis AD011   1 1
No Yes Bifidobacterium breve UCC2003   2 2
No Yes Bifidobacterium bifidum PRL2010   1 1
No Yes Bifidobacterium bifidum BGN4   1 1
No Yes Actinomyces viscosus C505   1 1
No Yes Deinococcus peraridilitoris DSM 19664   2 2
No Yes Thermus oshimai JL-2   2 2
No Yes Thermus thermophilus JL-18   1 1
No Yes Thermus thermophilus SG0.5JP17-16   1 1
No Yes Thermus thermophilus HB8   1 1
No Yes [Eubacterium] cylindroides [Eubacterium] cylindroides T2-87   2 2
No Yes Erysipelothrix rhusiopathiae SY1027   1 1
No Yes Clostridium thermocellum DSM 1313   2 2
No Yes Faecalibacterium prausnitzii L2-6   1 1
No Yes Ruminococcus champanellensis 18P13   1 1
No Yes Sulfobacillus acidophilus TPY   2 2
No Yes Clostridium difficile BI1   7 7
No Yes Clostridium difficile R20291   7 7
No Yes Clostridium difficile CD196   7 7
No Yes Clostridium saccharolyticum Clostridium cf. saccharolyticum K10   1 1
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Candidatus Arthromitus sp. SFB-rat-Yit   1 1
No Yes Candidatus Arthromitus sp. SFB-mouse-Yit   2 2
No Yes Clostridium saccharobutylicum DSM 13864   6 6
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   20 20
No Yes Clostridium perfringens SM101   2 2
No Yes Clostridium perfringens str. 13   1 1
No Yes Clostridium botulinum H04402 065   2 2
No Yes Clostridium botulinum F str. 230613   3 3
No Yes Clostridium botulinum F str. Langeland   3 3
No Yes Clostridium botulinum E3 str. Alaska E43   1 1
No Yes Clostridium botulinum B1 str. Okra   3 3
No Yes Clostridium botulinum Ba4 str. 657   1 1
No Yes Clostridium botulinum A2 str. Kyoto   2 2
No Yes Clostridium botulinum A3 str. Loch Maree   1 1
No Yes Clostridium botulinum A str. Hall   2 2
No Yes Clostridium botulinum A str. ATCC 19397   2 2
No Yes Clostridium acetobutylicum DSM 1731   7 7
No Yes Clostridium acetobutylicum EA 2018   7 7
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   3 3
No Yes Thermoanaerobacterium thermosaccharolyticum M0795   6 6
No Yes Thermoanaerobacter sp. X513   1 1
No Yes Halobacteroides halobius DSM 5150   2 2
No Yes Carnobacterium maltaromaticum LMA28   15 15
No Yes Melissococcus plutonius ATCC 35311   4 4
No Yes Enterococcus mundtii QU 25   10 10
No Yes Enterococcus casseliflavus EC20   23 23
No Yes Enterococcus faecium Aus0085   12 12
No Yes Enterococcus faecium NRRL B-2354   10 10
No Yes Enterococcus faecium DO   10 10
No Yes Enterococcus faecalis str. Symbioflor 1   9 9
No Yes Enterococcus faecalis D32   9 9
No Yes Enterococcus faecalis OG1RF   7 7
No Yes Enterococcus faecalis V583   7 7
No Yes Leuconostoc carnosum JB16   1 1
No Yes Leuconostoc mesenteroides subsp. mesenteroides J18   3 3
No Yes Leuconostoc gelidum JB7   3 3
No Yes Lactobacillus paracasei subsp. paracasei 8700:2   6 6
No Yes Lactobacillus casei LOCK919   6 6
No Yes Lactobacillus casei W56   6 6
No Yes Lactobacillus casei LC2W   7 7
No Yes Lactobacillus casei BD-II   6 6
No Yes Lactobacillus casei BL23   6 6
No Yes Lactobacillus casei str. Zhang   4 4
No Yes Lactobacillus rhamnosus LOCK908   7 7
No Yes Lactobacillus rhamnosus LOCK900   3 3
No Yes Lactobacillus rhamnosus ATCC 8530   6 6
No Yes Lactobacillus rhamnosus GG   7 7
No Yes Lactobacillus rhamnosus GG   7 7
No Yes Lactobacillus johnsonii N6.2   3 3
No Yes Lactobacillus johnsonii DPC 6026   5 5
No Yes Lactobacillus johnsonii NCC 533   6 6
No Yes Lactobacillus amylovorus GRL 1112   5 5
No Yes Lactobacillus plantarum 16   8 8
No Yes Lactobacillus plantarum ZJ316   9 9
No Yes Lactobacillus plantarum subsp. plantarum ST-III   11 11
No Yes Lactobacillus plantarum subsp. plantarum P-8   8 8
No Yes Lactobacillus plantarum WCFS1   11 11
No Yes Lactobacillus helveticus R0052   3 3
No Yes Lactobacillus helveticus H10   3 3
No Yes Lactobacillus helveticus CNRZ32   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ND02   3 3
No Yes Lactobacillus delbrueckii subsp. bulgaricus 2038   1 1
No Yes Lactobacillus brevis KB290   1 1
No Yes Lactobacillus acidophilus La-14   8 8
No Yes Lactobacillus acidophilus NCFM   8 8
No Yes Pediococcus pentosaceus SL4   4 4
No Yes Lactococcus garvieae Lg2   7 7
No Yes Lactococcus lactis subsp. lactis KLDS 4.0325   4 4
No Yes Lactococcus lactis subsp. lactis IO-1   6 6
No Yes Lactococcus lactis subsp. lactis CV56   6 6
No Yes Lactococcus lactis subsp. lactis KF147   9 9
No Yes Lactococcus lactis subsp. lactis Il1403   6 6
No Yes Lactococcus lactis subsp. cremoris KW2   7 7
No Yes Lactococcus lactis subsp. cremoris UC509.9   8 8
No Yes Lactococcus lactis subsp. cremoris A76   9 9
No Yes Lactococcus lactis subsp. cremoris NZ9000   7 7
No Yes Lactococcus lactis subsp. cremoris SK11   8 8
No Yes Streptococcus constellatus subsp. pharyngis C1050   4 4
No Yes Streptococcus constellatus subsp. pharyngis C818   4 4
No Yes Streptococcus constellatus subsp. pharyngis C232   4 4
No Yes Streptococcus intermedius B196   4 4
No Yes Streptococcus intermedius C270   4 4
No Yes Streptococcus anginosus C238   5 5
No Yes Streptococcus anginosus C1051   5 5
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069   9 9
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC 43143   10 10
No Yes Streptococcus lutetiensis 033   5 5
No Yes Streptococcus equi subsp. zooepidemicus ATCC 35246   4 4
No Yes Streptococcus equi subsp. zooepidemicus MGCS10565   3 3
No Yes Streptococcus equi subsp. zooepidemicus   4 4
No Yes Streptococcus dysgalactiae subsp. equisimilis 167   4 4
No Yes Streptococcus dysgalactiae subsp. equisimilis AC-2713   2 2
No Yes Streptococcus dysgalactiae subsp. equisimilis ATCC 12394   3 3
No Yes Streptococcus dysgalactiae subsp. equisimilis RE378   4 4
No Yes Streptococcus oligofermentans AS 1.3089   2 2
No Yes Streptococcus iniae SF1   4 4
No Yes Streptococcus parasanguinis FW213   3 3
No Yes Streptococcus pyogenes HSC5   4 4
No Yes Streptococcus pyogenes A20   4 4
No Yes Streptococcus pyogenes MGAS1882   4 4
No Yes Streptococcus pyogenes MGAS15252   4 4
No Yes Streptococcus pyogenes Alab49   4 4
No Yes Streptococcus pyogenes MGAS10750   4 4
No Yes Streptococcus pyogenes MGAS10270   4 4
No Yes Streptococcus pyogenes MGAS2096   4 4
No Yes Streptococcus pyogenes MGAS9429   4 4
No Yes Streptococcus pyogenes MGAS6180   4 4
No Yes Streptococcus pyogenes NZ131   4 4
No Yes Streptococcus pyogenes MGAS8232   4 4
No Yes Streptococcus pyogenes MGAS10394   4 4
No Yes Streptococcus pyogenes MGAS315   4 4
No Yes Streptococcus pyogenes SSI-1   4 4
No Yes Streptococcus pyogenes M1 476   4 4
No Yes Streptococcus pyogenes MGAS5005   4 4
No Yes Streptococcus pyogenes M1 GAS   4 4
No Yes Streptococcus pneumoniae A026   6 6
No Yes Streptococcus pneumoniae ST556   6 6
No Yes Streptococcus pneumoniae SPNA45   5 5
No Yes Streptococcus pneumoniae SPN994039   5 5
No Yes Streptococcus pneumoniae SPN994038   5 5
No Yes Streptococcus pneumoniae SPN034183   5 5
No Yes Streptococcus pneumoniae SPN034156   6 6
No Yes Streptococcus pneumoniae INV104   6 6
No Yes Streptococcus pneumoniae INV200   4 4
No Yes Streptococcus pneumoniae OXC141   5 5
No Yes Streptococcus pneumoniae gamPNI0373   6 6
No Yes Streptococcus pneumoniae AP200   5 5
No Yes Streptococcus pneumoniae ATCC 700669   4 4
No Yes Streptococcus pneumoniae TCH8431/19A   5 5
No Yes Streptococcus pneumoniae CGSP14   5 5
No Yes Streptococcus pneumoniae G54   5 5
No Yes Streptococcus pneumoniae JJA   3 3
No Yes Streptococcus pneumoniae 70585   6 6
No Yes Streptococcus pneumoniae Hungary19A-6   5 5
No Yes Streptococcus pneumoniae Taiwan19F-14   6 6
No Yes Streptococcus pneumoniae D39   6 6
No Yes Streptococcus pneumoniae 670-6B   6 6
No Yes Streptococcus pneumoniae R6   6 6
No Yes Streptococcus pneumoniae TIGR4   6 6
No Yes Streptococcus agalactiae ILRI112   2 2
No Yes Streptococcus agalactiae ILRI005   3 3
No Yes Streptococcus agalactiae 09mas018883   3 3
No Yes Streptococcus agalactiae 2-22   1 1
No Yes Streptococcus agalactiae SA20-06   2 2
No Yes Streptococcus agalactiae GD201008-001   2 2
No Yes Streptococcus agalactiae NEM316   3 3
No Yes Streptococcus agalactiae 2603V/R   2 2
No Yes Streptococcus mutans GS-5   4 4
No Yes Streptococcus mutans LJ23   4 4
No Yes Streptococcus mutans UA159   4 4
No Yes Streptococcus thermophilus JIM 8232   1 1
No Yes Streptococcus thermophilus LMG 18311   1 1
No Yes Streptococcus suis T15   4 4
No Yes Streptococcus suis TL13   3 3
No Yes Streptococcus suis SC070731   3 3
No Yes Streptococcus suis S735   4 4
No Yes Streptococcus suis ST3   8 8
No Yes Streptococcus suis D9   9 9
No Yes Streptococcus suis SS12   4 4
No Yes Streptococcus suis D12   5 5
No Yes Streptococcus suis ST1   4 4
No Yes Streptococcus suis A7   4 4
No Yes Streptococcus suis JS14   3 3
No Yes Streptococcus suis BM407   5 5
No Yes Streptococcus suis SC84   4 4
No Yes Streptococcus suis GZ1   4 4
No Yes Streptococcus suis 98HAH33   5 5
No Yes Streptococcus suis 05ZYH33   5 5
No Yes Streptococcus salivarius CCHSS3   3 3
No Yes Streptococcus salivarius JIM8777   2 2
No Yes Exiguobacterium antarcticum B7   2 2
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1   1 1
No Yes Thermobacillus composti KWC4   3 3
No Yes Paenibacillus mucilaginosus KNP414   4 4
No Yes Paenibacillus mucilaginosus K02   3 3
No Yes Paenibacillus polymyxa CR1   17 17
No Yes Paenibacillus polymyxa SC2   8 8
No Yes Paenibacillus polymyxa E681   8 8
No Yes Listeria monocytogenes EGD sequence   11 11
No Yes Listeria monocytogenes N53-1   12 12
No Yes Listeria monocytogenes La111   12 12
No Yes Listeria monocytogenes serotype 4b str. LL195   10 10
No Yes Listeria monocytogenes 07PF0776   10 10
No Yes Listeria monocytogenes M7   9 9
No Yes Listeria monocytogenes J1-220   10 10
No Yes Listeria monocytogenes J1816   9 9
No Yes Listeria monocytogenes SLCC2376   10 10
No Yes Listeria monocytogenes SLCC5850   11 11
No Yes Listeria monocytogenes ATCC 19117   10 10
No Yes Listeria monocytogenes L312   10 10
No Yes Listeria monocytogenes SLCC2479   11 11
No Yes Listeria monocytogenes SLCC7179   11 11
No Yes Listeria monocytogenes SLCC2540   10 10
No Yes Listeria monocytogenes SLCC2378   10 10
No Yes Listeria monocytogenes serotype 1/2b str. SLCC2755   10 10
No Yes Listeria monocytogenes serotype 1/2c str. SLCC2372   11 11
No Yes Listeria monocytogenes serotype 7 str. SLCC2482   10 10
No Yes Listeria monocytogenes 08-5578   11 11
No Yes Listeria monocytogenes 08-5923   11 11
No Yes Listeria monocytogenes L99   9 9
No Yes Listeria monocytogenes HCC23   9 9
No Yes Listeria monocytogenes 10403S   11 11
No Yes Listeria monocytogenes J0161   11 11
No Yes Listeria monocytogenes Finland 1998   11 11
No Yes Listeria monocytogenes FSL R2-561   11 11
No Yes Listeria monocytogenes serotype 4b str. F2365   10 10
No Yes Listeria monocytogenes EGD-e   11 11
No Yes Geobacillus sp. C56-T3   3 3
No Yes Geobacillus sp. Y4.1MC1   3 3
No Yes Geobacillus sp. Y412MC52   3 3
No Yes Geobacillus sp. Y412MC61   3 3
No Yes Amphibacillus xylanus NBRC 15112   6 6
No Yes Bacillus amyloliquefaciens subsp. plantarum sequencing   4 4
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5033   5 5
No Yes Bacillus amyloliquefaciens subsp. plantarum AS43.3   5 5
No Yes Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2   4 4
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5113   5 5
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5036   5 5
No Yes Bacillus amyloliquefaciens subsp. plantarum CAU B946   3 3
No Yes Bacillus amyloliquefaciens LFB112   3 3
No Yes Bacillus amyloliquefaciens CC178   5 5
No Yes Bacillus amyloliquefaciens Y2   4 4
No Yes Bacillus amyloliquefaciens IT-45   3 3
No Yes Bacillus amyloliquefaciens XH7   5 5
No Yes Bacillus amyloliquefaciens LL3   5 5
No Yes Bacillus amyloliquefaciens TA208   5 5
No Yes Bacillus amyloliquefaciens DSM 7   5 5
No Yes Bacillus licheniformis 9945A   6 6
No Yes Bacillus subtilis PY79   4 4
No Yes Bacillus subtilis XF-1   4 4
No Yes Bacillus subtilis QB928   4 4
No Yes Bacillus subtilis BSn5   3 3
No Yes Bacillus subtilis subsp. subtilis str. BAB-1   4 4
No Yes Bacillus subtilis subsp. subtilis str. BSP1   4 4
No Yes Bacillus subtilis subsp. subtilis str. RO-NN-1   4 4
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   4 4
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   6 6
No Yes Bacillus subtilis subsp. spizizenii str. W23   5 5
No Yes Bacillus subtilis subsp. natto BEST195   5 5
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   6 6
No Yes Bacillus infantis NRRL B-14911   4 4
No Yes Bacillus cereus subsp. cytotoxis NVH 391-98   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis MC28   2 2
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   1 1
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Bacillus megaterium WSH-002   2 2
No Yes Bacillus megaterium QM B1551   3 3
No Yes Bacillus coagulans 36D1   1 1
No Yes Staphylococcus aureus subsp. aureus MSHR1132   2 2
No Yes Staphylococcus pseudintermedius ED99   2 2
No Yes Staphylococcus pasteuri SP1   2 2
No Yes Staphylococcus lugdunensis N920143   2 2
No Yes Staphylococcus warneri SG1   2 2
No Yes Staphylococcus epidermidis ATCC 12228   1 1
No Yes Staphylococcus aureus CA-347   2 2
No Yes Staphylococcus aureus Bmb9393   2 2
No Yes Staphylococcus aureus M1   2 2
No Yes Staphylococcus aureus 08BA02176   2 2
No Yes Staphylococcus aureus ST228/18412   2 2
No Yes Staphylococcus aureus ST228/18341   2 2
No Yes Staphylococcus aureus ST228/16125   2 2
No Yes Staphylococcus aureus ST228/16035   2 2
No Yes Staphylococcus aureus ST228/15532   2 2
No Yes Staphylococcus aureus ST228/10497   2 2
No Yes Staphylococcus aureus ST228/10388   2 2
No Yes Staphylococcus aureus 04-02981   2 2
No Yes Staphylococcus aureus RF122   2 2
No Yes Staphylococcus aureus subsp. aureus Z172   2 2
No Yes Staphylococcus aureus subsp. aureus 6850   2 2
No Yes Staphylococcus aureus subsp. aureus SA957   2 2
No Yes Staphylococcus aureus subsp. aureus CN1   2 2
No Yes Staphylococcus aureus subsp. aureus SA40   2 2
No Yes Staphylococcus aureus subsp. aureus 11819-97   2 2
No Yes Staphylococcus aureus subsp. aureus M013   2 2
No Yes Staphylococcus aureus subsp. aureus HO 5096 0412   2 2
No Yes Staphylococcus aureus subsp. aureus VC40   2 2
No Yes Staphylococcus aureus subsp. aureus T0131   2 2
No Yes Staphylococcus aureus subsp. aureus LGA251   2 2
No Yes Staphylococcus aureus subsp. aureus ECT-R 2   2 2
No Yes Staphylococcus aureus subsp. aureus JKD6159   2 2
No Yes Staphylococcus aureus subsp. aureus ED133   2 2
No Yes Staphylococcus aureus subsp. aureus ED98   2 2
No Yes Staphylococcus aureus subsp. aureus TW20   2 2
No Yes Staphylococcus aureus subsp. aureus 55/2053   2 2
No Yes Staphylococcus aureus subsp. aureus TCH60   2 2
No Yes Staphylococcus aureus subsp. aureus str. JKD6008   2 2
No Yes Staphylococcus aureus subsp. aureus 71193   2 2
No Yes Staphylococcus aureus subsp. aureus S0385   2 2
No Yes Staphylococcus aureus subsp. aureus str. Newman   2 2
No Yes Staphylococcus aureus subsp. aureus Mu3   2 2
No Yes Staphylococcus aureus subsp. aureus USA300_TCH1516   2 2
No Yes Staphylococcus aureus subsp. aureus USA300_FPR3757   2 2
No Yes Staphylococcus aureus subsp. aureus JH9   2 2
No Yes Staphylococcus aureus subsp. aureus MSSA476   2 2
No Yes Staphylococcus aureus subsp. aureus MRSA252   2 2
No Yes Staphylococcus aureus subsp. aureus MW2   2 2
No Yes Staphylococcus aureus subsp. aureus N315   2 2
No Yes Staphylococcus aureus subsp. aureus Mu50   2 2
No Yes Staphylococcus aureus subsp. aureus COL   2 2
No Yes Staphylococcus aureus subsp. aureus NCTC 8325   2 2
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Brachyspira pilosicoli WesB   3 3
No Yes Brachyspira pilosicoli B2904   3 3
No Yes Brachyspira pilosicoli P43/6/78   2 2
No Yes Treponema pedis str. T A4   1 1
No Yes Spirochaeta thermophila DSM 6578   1 1
No Yes Sorangium cellulosum So0157-2   5 5
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Caulobacter crescentus CB15   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Octadecabacter antarcticus 307   1 1
No Yes Octadecabacter arcticus 238   1 1
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Magnetospirillum gryphiswaldense MSR-1 v2   2 2
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   1 1
No Yes Bradyrhizobium sp. BTAi1   2 2
No Yes Bradyrhizobium oligotrophicum S58   2 2
No Yes Bradyrhizobium japonicum USDA 6   2 2
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Bibersteinia trehalosi USDA-ARS-USMARC-192   1 1
No Yes Actinobacillus suis H91-0380   1 1
No Yes Aeromonas hydrophila ML09-119   1 1
No Yes Vibrio fischeri ES114   1 1
No Yes Vibrio sp. EJY3   3 3
No Yes Vibrio parahaemolyticus BB22OP   1 1
No Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749   1 1
No Yes Vibrio anguillarum Listonella anguillarum M3   1 1
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Vibrio vulnificus CMCP6   1 1
No Yes Vibrio vulnificus YJ016   1 1
No Yes Vibrio cholerae LMA3984-4   1 1
No Yes Vibrio cholerae M66-2   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Vibrio cholerae IEC224   1 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   1 1
No Yes Vibrio cholerae MJ-1236   1 1
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS678   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Shewanella baltica OS223   1 1
No Yes Shewanella baltica OS195   1 1
No Yes Shewanella baltica OS155   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   1 1
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   1 1
No Yes Alteromonas macleodii str. 'English Channel 615'   2 2
No Yes Alteromonas macleodii AltDE1   1 1
No Yes Alteromonas macleodii str. 'English Channel 673'   2 2
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   1 1
No Yes Alteromonas macleodii str. 'Black Sea 11'   2 2
No Yes Alteromonas macleodii ATCC 27126   2 2
No Yes Edwardsiella tarda C07-087   2 2
No Yes Edwardsiella tarda FL6-60   2 2
No Yes Rahnella aquatilis HX2   6 6
No Yes Yersinia pseudotuberculosis PB1/+   1 1
No Yes Yersinia pseudotuberculosis YPIII   1 1
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia pestis biovar Microtus str. 91001   1 1
No Yes Yersinia pestis A1122   1 1
No Yes Yersinia pestis Z176003   1 1
No Yes Yersinia pestis D182038   1 1
No Yes Yersinia pestis D106004   1 1
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   1 1
No Yes Yersinia pestis Nepal516   1 1
No Yes Yersinia pestis Antiqua   1 1
No Yes Yersinia pestis Angola   1 1
No Yes Yersinia pestis CO92   1 1
No Yes Yersinia pestis KIM10+   1 1
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   5 5
No Yes Yersinia enterocolitica subsp. palearctica Y11   5 5
No Yes Serratia sp. AS13   7 7
No Yes Serratia plymuthica S13   7 7
No Yes Serratia plymuthica 4Rx13   7 7
No Yes Serratia marcescens FGI94   5 5
No Yes Serratia marcescens WW4   4 4
No Yes Serratia liquefaciens ATCC 27592   6 6
No Yes Dickeya dadantii Ech586   4 4
No Yes Dickeya dadantii 3937   5 5
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   10 10
No Yes Pantoea ananatis LMG 5342   4 4
No Yes Pantoea ananatis PA13   5 5
No Yes Pantoea ananatis AJ13355   5 5
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   2 2
No Yes Cronobacter sakazakii CMCC 45402   7 7
No Yes Cronobacter sakazakii SP291   5 5
No Yes Cronobacter sakazakii ATCC BAA-894   6 6
No Yes Raoultella ornithinolytica B6   7 7
No Yes Shigella sonnei 53G   4 4
No Yes Shigella flexneri 2002017   2 2
No Yes Shigella flexneri 2a str. 2457T   2 2
No Yes Shigella flexneri 2a str. 301   1 1
No Yes Shigella dysenteriae 1617   3 3
No Yes Shigella boydii Sb227   2 2
No Yes Salmonella bongori N268-08   2 2
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   2 2
No Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992   2 2
No Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633   2 2
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   2 2
No Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   2 2
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   2 2
No Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1   2 2
No Yes Salmonella enterica subsp. enterica serovar Newport str. SL254   2 2
No Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   2 2
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2   2 2
No Yes Salmonella enterica serovar Bovismorbificans genomics   2 2
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   2 2
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   2 2
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   2 2
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   2 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   2 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601   2 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   2 2
No Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069   2 2
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182   2 2
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578   2 2
No Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476   2 2
No Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004   2 2
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67   2 2
No Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078   2 2
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   2 2
No Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91   2 2
No Yes Klebsiella oxytoca KCTC 1686   9 9
No Yes Klebsiella pneumoniae JM45   8 8
No Yes Klebsiella pneumoniae CG43   8 8
No Yes Klebsiella pneumoniae KCTC 2242   8 8
No Yes Klebsiella pneumoniae 342   10 10
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   8 8
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   8 8
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   8 8
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   9 9
No Yes Enterobacter aerogenes EA1509E   7 7
No Yes Escherichia coli E24377A   4 4
No Yes Escherichia coli E. coli PMV-1   4 4
No Yes Escherichia coli JJ1886   2 2
No Yes Escherichia coli LY180   4 4
No Yes Escherichia coli APEC O78   4 4
No Yes Escherichia coli O7:K1 str. CE10   3 3
No Yes Escherichia coli O104:H4 str. 2009EL-2050   4 4
No Yes Escherichia coli O104:H4 str. 2009EL-2071   4 4
No Yes Escherichia coli O104:H4 str. 2011C-3493   4 4
No Yes Escherichia coli NA114   2 2
No Yes Escherichia coli P12b   3 3
No Yes Escherichia coli str. 'clone D i2'   3 3
No Yes Escherichia coli str. 'clone D i14'   3 3
No Yes Escherichia coli UM146   4 4
No Yes Escherichia coli 042   2 2
No Yes Escherichia coli Xuzhou21   2 2
No Yes Escherichia coli IHE3034   4 4
No Yes Escherichia coli UMNK88   4 4
No Yes Escherichia coli O83:H1 str. NRG 857C   4 4
No Yes Escherichia coli ABU 83972   3 3
No Yes Escherichia coli KO11FL   4 4
No Yes Escherichia coli KO11FL   4 4
No Yes Escherichia coli LF82   4 4
No Yes Escherichia coli ED1a   3 3
No Yes Escherichia coli IAI39   3 3
No Yes Escherichia coli UMN026   2 2
No Yes Escherichia coli 55989   4 4
No Yes Escherichia coli S88   4 4
No Yes Escherichia coli IAI1   4 4
No Yes Escherichia coli W   4 4
No Yes Escherichia coli W   4 4
No Yes Escherichia coli DH1   3 3
No Yes Escherichia coli DH1   3 3
No Yes Escherichia coli ATCC 8739   3 3
No Yes Escherichia coli BL21(DE3)   3 3
No Yes Escherichia coli BL21(DE3)   3 3
No Yes Escherichia coli SMS-3-5   3 3
No Yes Escherichia coli SE15   2 2
No Yes Escherichia coli SE11   4 4
No Yes Escherichia coli APEC O1   4 4
No Yes Escherichia coli O103:H2 str. 12009   4 4
No Yes Escherichia coli UTI89   4 4
No Yes Escherichia coli 536   4 4
No Yes Escherichia coli HS   4 4
No Yes Escherichia coli ETEC H10407   3 3
No Yes Escherichia coli O55:H7 str. RM12579   2 2
No Yes Escherichia coli O55:H7 str. CB9615   2 2
No Yes Escherichia coli O26:H11 str. 11368   4 4
No Yes Escherichia coli CFT073   3 3
No Yes Escherichia coli O111:H- str. 11128   4 4
No Yes Escherichia coli O127:H6 str. E2348/69   2 2
No Yes Escherichia coli O157:H7 str. TW14359   2 2
No Yes Escherichia coli O157:H7 str. EC4115   2 2
No Yes Escherichia coli O157:H7 str. Sakai   2 2
No Yes Escherichia coli O157:H7 str. EDL933   2 2
No Yes Escherichia coli str. K-12 substr. MDS42   3 3
No Yes Escherichia coli BW2952   3 3
No Yes Escherichia coli str. K-12 substr. MG1655   3 3
No Yes Escherichia coli str. K-12 substr. W3110   3 3
No Yes Escherichia coli str. K-12 substr. DH10B   3 3
No Yes Escherichia coli B str. REL606   3 3
No Yes Enterobacter cloacae SCF1   4 4
No Yes Enterobacter cloacae EcWSU1   8 8
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   5 5
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   6 6
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   6 6
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Sulfolobus islandicus LAL14/1   1 1
No Yes Sulfolobus islandicus REY15A   1 1
No Yes Sulfolobus islandicus HVE10/4   1 1
No Yes Sulfolobus islandicus Y.G.57.14   1 1
No Yes Sulfolobus islandicus L.S.2.15   1 1
No Yes Sulfolobus islandicus M.16.27   1 1
No Yes Sulfolobus islandicus M.14.25   1 1
No Yes Sulfolobus islandicus M.16.4   1 1
No Yes Sulfolobus islandicus L.D.8.5   1 1
No Yes Sulfolobus acidocaldarius SUSAZ   1 1
No Yes Sulfolobus acidocaldarius Ron12/I   1 1
No Yes Sulfolobus acidocaldarius N8   1 1
No Yes Thermococcus sp. AM4   1 1
No Yes Thermococcus litoralis DSM 5473   2 2
No Yes Pyrococcus furiosus DSM 3638   4 4
No Yes Ferroplasma acidarmanus fer1   2 2
No Yes Homo sapiens 75_37 (old version GRC) Human 14 8
No Yes Homo sapiens (NCBI version) Human 9 5
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 8 4
No Yes Heliconius numata (Incomplete)   11 11
No Yes Moniliophthora perniciosa FA553 (Genome survey)   2 2
No Yes Picea sitchensis (Incomplete) Sitka spruce 2 2
No Yes Lotus japonicus (Early assembly)   44 44
No Yes Malus x domestica (Duplicate) Apple 90 89
No Yes Ricinus communis (Early assembly) Castor bean 24 24
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   37 37
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 22 21
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 22 21
No Yes Phoenix dactylifera (Early draft) Date palm 16 16
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   2 2
No Yes Homo sapiens 69_37 Human 9 5
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 8 4
No Yes Gorilla gorilla 69_3.1 Western gorilla 9 5
No Yes Pongo abelii 69_2 Sumatran orangutan 9 5
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 9 5
No Yes Macaca mulatta 69_1 Rhesus monkey 9 5
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 9 5
No Yes Otolemur garnettii 69_3 Small-eared galago 9 5
No Yes Microcebus murinus 69_1 Gray mouse lemur 7 4
No Yes Rattus norvegicus 69_3.4 Norway rat 8 5
No Yes Mus musculus 69_38 House mouse 8 4
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 9 5
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 8 4
No Yes Cavia porcellus 69_3 Domestic guinea pig 9 5
No Yes Oryctolagus cuniculus 69_2 Rabbit 15 7
No Yes Ochotona princeps 69 American pika 9 5
No Yes Tupaia belangeri 69 Northern tree shrew 9 5
No Yes Sus scrofa 69_10.2 Pig 13 7
No Yes Bos taurus 69_3.1 Cattle 9 5
No Yes Vicugna pacos 69_1 Alpaca 10 5
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 9 5
No Yes Mustela putorius furo 69_1.0 Domestic ferret 9 5
No Yes Ailuropoda melanoleuca 69_1 Giant panda 9 6
No Yes Canis familiaris 69_3.1 Dog 9 5
No Yes Felis catus 69 Domestic cat 6 4
No Yes Equus caballus 69_2 Horse 9 5
No Yes Myotis lucifugus 69_2.0 Little brown bat 9 5
No Yes Pteropus vampyrus 69_1 Large flying fox 9 5
No Yes Sorex araneus 69_1 European shrew 7 5
No Yes Erinaceus europaeus 69 Western European hedgehog 8 5
No Yes Procavia capensis 69_1 Cape rock hyrax 8 5
No Yes Loxodonta africana 69_3 African savanna elephant 9 5
No Yes Echinops telfairi 69 Small Madagascar hedgehog 10 5
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 7 4
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 6 4
No Yes Macropus eugenii 69_1.0 Tammar wallaby 9 5
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 9 5
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 9 5
No Yes Ornithorhynchus anatinus 69_5 Platypus 9 5
No Yes Petromyzon marinus 69_7.0 Sea lamprey 8 5
No Yes Meleagris gallopavo 69_2 Turkey 7 3
No Yes Gallus gallus 69_2 Chicken 8 4
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 9 5
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 9 5
No Yes Anolis carolinensis 69_2.0 Green anole 9 5
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 12 6
No Yes Latimeria chalumnae 69_1 Coelacanth 9 5
No Yes Gadus morhua 69_1 Atlantic cod 12 7
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 10 6
No Yes Takifugu rubripes 69_4 Torafugu 13 8
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 12 6
No Yes Oryzias latipes 69_1 Japanese medaka 9 5
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 13 7
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 11 7
No Yes Danio rerio 69_9 Zebrafish 13 7
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 8 4
No Yes Ciona intestinalis 69 Vase tunicate 4 3
No Yes Drosophila melanogaster 69_5 Fruit fly 1 1
No Yes Caenorhabditis elegans 69_215 Roundworm 2 2
No Yes Arabidopsis thaliana 10 Thale cress 48 48
No Yes 1_050719N (meta-genome)   6 6
No Yes 2_050719S (meta-genome)   10 10
No Yes 2_Base_of_chrolophyll_max (meta-genome)   2 2
No Yes 3_050719R (meta-genome)   9 9
No Yes 4_050719Q (meta-genome)   18 18
No Yes 5_050719P (meta-genome)   22 22
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   4 4
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   27 27
No Yes Combined (meta-genome)   32 32
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   36 36
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   12 12
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   17 17
No Yes Dump bottom (Dump bottom) (meta-genome)   51 51
No Yes Dump top (Dump top) (meta-genome)   30 30
No Yes Endophytic microbiome from Rice (meta-genome)   10 10
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   4 4
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   7 7
No Yes Fungus garden combined (combined) (meta-genome)   39 39
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   39 39
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   38 38
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   2 2
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   21 21
No Yes Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   11 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   11 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   11 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   14 14
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   11 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   13 13
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   10 10
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   16 16
No Yes Human Gut Community Subject 8 (meta-genome)   21 21
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   39 39
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   10 10
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   8 8
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   14 14
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   12 12
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   3 3
No Yes NCBI 2017_08 genome   231229 230039
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   13 13
No Yes Protozoadb 2010_08 (Protozoadb)   5 5
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   28 28
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   15 15
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   9 9
No Yes Single-cell genome from subgingival tooth surface TM7a (meta-genome)   2 2
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   10 10
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   18 18
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   47 47
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   24 24
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   24 24
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   17 17
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   16 16
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   5 5
No Yes STRING v9.0.5 (STRING)   1916 1797
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   10 10
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Termite Protist Endosymbiont Community (meta-genome)   3 3
No Yes Uniprot 2018_03 genome   39170 38327
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   4 4
No Yes Global Ocean Sampling Expedition (GOS)   613 613
No Yes NCBI plasmid sequences (Plasmids)   67 67
No Yes NCBI viral sequences (Viral)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   30 30
No Yes Protein Data Bank (all PDB sequenc)   243 243
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1329 1329
No Yes TargetDB (Targets)   19 19
No Yes The Salmonella enterica Pan-genome (meta-genome)   61 61

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.