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PA domain superfamily domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   90323 90323
No Yes Homo sapiens 76_38 Human 64 64
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 17 17
No Yes Gorilla gorilla 76_3.1 Western gorilla 20 20
No Yes Pongo abelii 76_2 Sumatran orangutan 20 20
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 15 15
No Yes Papio anubis 76 Olive baboon 15 15
No Yes Macaca mulatta 76_1 Rhesus monkey 29 29
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 30 30
No Yes Otolemur garnettii 76_3 Small-eared galago 17 17
No Yes Microcebus murinus 76_1 Gray mouse lemur 18 16
No Yes Rattus norvegicus 76_5.0 Norway rat 17 17
No Yes Mus musculus 76_38 House mouse 27 27
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 14 14
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 13 13
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 13 13
No Yes Cavia porcellus 76_3 Domestic guinea pig 11 11
No Yes Oryctolagus cuniculus 76_2 Rabbit 17 17
No Yes Ochotona princeps 76 American pika 12 11
No Yes Tupaia belangeri 76 Northern tree shrew 10 10
No Yes Sus scrofa 76_10.2 Pig 17 17
No Yes Bos taurus 76_3.1 Cattle 15 15
No Yes Ovis aries 76_3.1 Sheep 17 17
No Yes Vicugna pacos 76_1 Alpaca 10 9
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 14 14
No Yes Mustela putorius furo 76_1.0 Domestic ferret 15 15
No Yes Ailuropoda melanoleuca 76_1 Giant panda 20 20
No Yes Canis familiaris 76_3.1 Dog 15 15
No Yes Felis catus 76_6.2 Domestic cat 15 15
No Yes Equus caballus 76_2 Horse 17 17
No Yes Myotis lucifugus 76_2.0 Little brown bat 16 16
No Yes Pteropus vampyrus 76_1 Large flying fox 18 17
No Yes Sorex araneus 76_1 European shrew 7 7
No Yes Erinaceus europaeus 76 Western European hedgehog 11 11
No Yes Procavia capensis 76_1 Cape rock hyrax 14 13
No Yes Loxodonta africana 76_3 African savanna elephant 16 16
No Yes Echinops telfairi 76 Small Madagascar hedgehog 17 16
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 22 22
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 9 9
No Yes Macropus eugenii 76_1.0 Tammar wallaby 17 16
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 19 19
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 18 18
No Yes Ornithorhynchus anatinus 76_5 Platypus 12 12
No Yes Saccoglossus kowalevskii v3.0   12 12
No Yes Petromyzon marinus 76_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 76_2 Turkey 12 12
No Yes Gallus gallus 76_4 Chicken 11 11
No Yes Anas platyrhynchos 76_1.0 Mallard 12 12
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 13 13
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 14 14
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 16 16
No Yes Anolis carolinensis 76_2.0 Green anole 14 14
No Yes Xenopus laevis African clawed frog 23 23
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 13 13
No Yes Latimeria chalumnae 76_1 Coelacanth 18 18
No Yes Lepisosteus oculatus 76 Spotted gar 21 21
No Yes Gadus morhua 76_1 Atlantic cod 13 13
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 15 15
No Yes Takifugu rubripes 76_4 Torafugu 43 43
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 19 19
No Yes Oryzias latipes 76_1 Japanese medaka 17 17
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 17 17
No Yes Poecilia formosa 76 Amazon molly 15 15
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 19 19
No Yes Astyanax mexicanus 76 Mexican tetra 15 15
No Yes Danio rerio 76_9 Zebrafish 23 23
No Yes Oikopleura dioica   7 7
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 19 19
No Yes Ciona intestinalis 76 Vase tunicate 12 11
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 25 20
No Yes Adineta vaga   39 39
No Yes Octopus bimaculoides 280   9 9
No Yes Crassostrea gigas 22 Pacific oyster 10 10
No Yes Lottia gigantea Owl limpet 6 6
No Yes Helobdella robusta   3 3
No Yes Capitella sp. I   10 10
No Yes Danaus plexippus OGS1.0 Monarch butterfly 3 3
No Yes Heliconius melpomene Postman butterfly 2 2
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 2 2
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 2
No Yes Linepithema humile v1.1 Argentine ant 2 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 2
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 2
No Yes Atta cephalotes v1.1   2 2
No Yes Camponotus floridanus v3.3 Florida carpenter ant 2 2
No Yes Lucilia cuprina Australian sheep blowfly 3 3
No Yes Drosophila grimshawi 1.3   4 4
No Yes Drosophila willistoni 1.3   4 4
No Yes Drosophila pseudoobscura 2.13   4 4
No Yes Drosophila persimilis 1.3   3 3
No Yes Drosophila suzukii   4 4
No Yes Drosophila yakuba 1.3   4 4
No Yes Drosophila simulans 1.3   3 3
No Yes Drosophila sechellia 1.3   4 4
No Yes Drosophila melanogaster 76_5 Fruit fly 12 12
No Yes Drosophila erecta 1.3   4 4
No Yes Drosophila ananassae 1.3   4 4
No Yes Drosophila virilis 1.2   3 3
No Yes Drosophila mojavensis 1.3   4 4
No Yes Megaselia scalaris 22   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 5 5
No Yes Culex pipiens quinquefasciatus Southern house mosquito 4 4
No Yes Anopheles darlingi 22 American malaria mosquito 3 3
No Yes Anopheles gambiae 49_3j African malaria mosquito 2 2
No Yes Tribolium castaneum 3.0 Red flour beetle 3 3
No Yes Pediculus humanus corporis (Early assembly) Human body louse 5 5
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Rhodnius prolixus 22   1 1
No Yes Daphnia pulex Common water flea 5 5
No Yes Strigamia maritima 22   8 8
No Yes Sarcoptes scabiei   2 2
No Yes Tetranychus urticae Two-spotted spider mite 3 3
No Yes Ixodes scapularis (Preliminary) Black-legged tick 13 13
No Yes Pristionchus pacificus   5 5
No Yes Meloidogyne incognita Southern root-knot nematode 4 4
No Yes Meloidogyne hapla   3 3
No Yes Onchocerca volvulus 22   3 3
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 3 3
No Yes Caenorhabditis japonica   4 4
No Yes Caenorhabditis brenneri   6 6
No Yes Caenorhabditis remanei   3 3
No Yes Caenorhabditis elegans 76_235 Roundworm 6 6
No Yes Caenorhabditis briggsae 2   4 4
No Yes Trichinella spiralis 22   1 1
No Yes Hymenolepis microstoma   3 3
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 3 3
No Yes Schistosoma mansoni   5 5
No Yes Mnemiopsis leidyi Sea walnut 4 4
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   12 12
No Yes Nematostella vectensis 1.0 Starlet sea anemone 18 18
No Yes Hydra vulgaris   10 10
No Yes Amphimedon queenslandica   3 3
No Yes Trichoplax adhaerens   8 8
No Yes Proterospongia sp. ATCC 50818   5 5
No Yes Monosiga brevicollis   5 5
No Yes Sphaeroforma arctica JP610   4 4
No Yes Capsaspora owczarzaki ATCC 30864   6 6
No Yes Conidiobolus coronatus NRRL28638 v1.0   5 5
No Yes Mortierella verticillata NRRL 6337   16 16
No Yes Phycomyces blakesleeanus   17 17
No Yes Rhizopus oryzae RA 99-880   16 16
No Yes Mucor circinelloides   17 17
No Yes Rhizomucor miehei CAU432   11 11
No Yes Malassezia globosa CBS 7966   4 4
No Yes Sporisorium reilianum 22   4 4
No Yes Ustilago maydis   4 4
No Yes Mixia osmundae IAM 14324 v1.0   3 3
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   5 5
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   8 8
No Yes Melampsora laricis-populina   5 5
No Yes Rhodotorula graminis WP1 v1.0   4 4
No Yes Sporobolomyces roseus IAM 13481   2 2
No Yes Microbotryum violaceum 22   9 9
No Yes Sphaerobolus stellatus v1.0   5 5
No Yes Piloderma croceum F 1598 v1.0   5 5
No Yes Serpula lacrymans var. lacrymans S7.9   4 4
No Yes Coniophora puteana   4 4
No Yes Hydnomerulius pinastri v2.0   4 4
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   4 4
No Yes Pisolithus microcarpus 441 v1.0   4 4
No Yes Pisolithus tinctorius Marx 270 v1.0   4 4
No Yes Scleroderma citrinum Foug A v1.0   4 4
No Yes Coprinopsis cinerea okayama7 130 v3   8 8
No Yes Pleurotus ostreatus Oyster mushroom 8 8
No Yes Amanita thiersii Skay4041 v1.0   9 9
No Yes Amanita muscaria Koide v1.0 Fly agaric 6 6
No Yes Galerina marginata v1.0   6 6
No Yes Hebeloma cylindrosporum h7 v2.0   5 5
No Yes Laccaria bicolor S238N-H82   3 3
No Yes Agaricus bisporus var. bisporus   5 5
No Yes Schizophyllum commune   3 3
No Yes Stereum hirsutum FP-91666 SS1 v1.0   5 5
No Yes Heterobasidion annosum   4 4
No Yes Gloeophyllum trabeumv1.0   5 5
No Yes Punctularia strigosozonata v1.0   6 6
No Yes Sebacina vermifera MAFF 305830 v1.0   5 5
No Yes Fomitiporia mediterranea v1.0   4 4
No Yes Tulasnella calospora AL13/4D v1.0   10 10
No Yes Postia placenta   5 5
No Yes Wolfiporia cocos MD-104 SS10 v1.0   4 4
No Yes Fomitopsis pinicolav1.0   4 4
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   4 4
No Yes Phanerochaete chrysosporium RP-78 2.1   4 4
No Yes Dichomitus squalens   6 6
No Yes Trametes versicolor v1.0   6 6
No Yes Tremella mesenterica Witches' butter 3 3
No Yes Daldinia eschscholzii EC12 v1.0   9 9
No Yes Apiospora montagnei NRRL 25634 v1.0   8 8
No Yes Magnaporthe poae ATCC 64411 22   14 14
No Yes Magnaporthe grisea 70-15   16 16
No Yes Podospora anserina   9 9
No Yes Sporotrichum thermophile ATCC 42464   6 6
No Yes Thielavia terrestris NRRL 8126   4 4
No Yes Chaetomium globosum CBS 148.51   6 6
No Yes Neurospora tetrasperma   5 5
No Yes Neurospora discreta FGSC 8579   5 5
No Yes Neurospora crassa OR74A   5 5
No Yes Cryphonectria parasitica Chestnut blight fungus 6 6
No Yes Verticillium albo-atrum VaMs.102   12 12
No Yes Verticillium dahliae VdLs.17   14 14
No Yes Acremonium alcalophilumv 1.0   9 9
No Yes Glomerella graminicola 22   12 12
No Yes Fusarium graminearum   13 13
No Yes Nectria haematococca mpVI   11 11
No Yes Fusarium oxysporum f. sp. lycopersici 4286   13 13
No Yes Fusarium verticillioides 7600   12 12
No Yes Trichoderma asperellum CBS 433.97 v1.0   7 7
No Yes Trichoderma atroviride   7 7
No Yes Trichoderma citrinoviride v1.0   6 6
No Yes Trichoderma reesei 1.2   6 6
No Yes Trichoderma virens Gv29-8   6 6
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   6 6
No Yes Trichoderma harzianum CBS 226.95 v1.0   6 6
No Yes Amorphotheca resinae v1.0 Creosote fungus 4 4
No Yes Botrytis cinerea B05.10   4 4
No Yes Sclerotinia sclerotiorum   4 4
No Yes Blumeria graminis 22   3 3
No Yes Didymella exigua CBS 183.55 v1.0   9 9
No Yes Leptosphaeria maculans 22   8 8
No Yes Setosphaeria turcica v1.0   12 12
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   12 12
No Yes Cochliobolus victoriae FI3 v1.0   13 13
No Yes Cochliobolus carbonum 26-R-13 v1.0   13 13
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 11 11
No Yes Alternaria brassicicola   10 10
No Yes Cochliobolus lunatus m118 v2.0   11 11
No Yes Pyrenophora teres f. teres 22   11 11
No Yes Pyrenophora tritici-repentis   11 11
No Yes Stagonospora nodorum   10 10
No Yes Mycosphaerella graminicola IPO323   7 7
No Yes Zasmidium cellare ATCC 36951 v1.0   5 5
No Yes Dothistroma septosporum   5 5
No Yes Septoria musiva v1.0   7 7
No Yes Mycosphaerella fijiensis CIRAD86   7 7
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   5 5
No Yes Paracoccidioides brasiliensis Pb18   4 4
No Yes Coccidioides posadasii RMSCC 3488   5 5
No Yes Coccidioides immitis RS   5 5
No Yes Ajellomyces dermatitidis SLH14081   5 5
No Yes Histoplasma capsulatum class NAmI strain WU24   5 5
No Yes Microsporum canis CBS 113480   5 5
No Yes Trichophyton equinum CBS 127.97   5 5
No Yes Trichophyton verrucosum HKI 0517   5 5
No Yes Arthroderma benhamiae CBS 112371   5 5
No Yes Trichophyton tonsurans CBS 112818   5 5
No Yes Trichophyton rubrum CBS 118892   4 4
No Yes Uncinocarpus reesii 1704   5 5
No Yes Aspergillus zonatus v1.0   4 4
No Yes Penicillium chrysogenum Wisconsin 54-1255   4 4
No Yes Penicillium chrysogenum v1.0   4 4
No Yes Aspergillus acidus v1.0   4 4
No Yes Aspergillus fumigatus Af293   5 5
No Yes Aspergillus brasiliensis v1.0   4 4
No Yes Aspergillus nidulans FGSC A4   5 5
No Yes Aspergillus sydowii v1.0   5 5
No Yes Aspergillus versicolor v1.0   5 5
No Yes Aspergillus glaucus   7 7
No Yes Aspergillus carbonarius ITEM 5010   4 4
No Yes Neosartorya fischeri NRRL 181   5 5
No Yes Aspergillus terreus NIH2624   6 6
No Yes Aspergillus tubingensis v1.0   4 4
No Yes Aspergillus wentii v1.0   8 8
No Yes Aspergillus oryzae RIB40   8 8
No Yes Aspergillus niger 22   4 4
No Yes Aspergillus niger ATCC 1015   3 3
No Yes Aspergillus flavus NRRL3357   8 8
No Yes Aspergillus clavatus NRRL 1   5 5
No Yes Penicillium marneffei ATCC 18224   3 3
No Yes Tuber melanosporum Mel28 22   5 5
No Yes Tuber melanosporum Vittad Perigord truffle 5 5
No Yes Hansenula polymorpha v2.0   4 4
No Yes Dekkera bruxellensis CBS 2499 v2.0   4 4
No Yes Pichia membranifaciensv1.0   4 4
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   4 4
No Yes Candida dubliniensis CD36   4 4
No Yes Candida tropicalis MYA-3404   3 3
No Yes Candida parapsilosis   4 4
No Yes Candida albicans SC5314   4 4
No Yes Lodderomyces elongisporus NRRL YB-4239   3 3
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   4 4
No Yes Pichia stipitis CBS 6054   4 4
No Yes Candida guilliermondii ATCC 6260   4 4
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   5 5
No Yes Debaromyces hansenii   4 4
No Yes Wickerhamomyces anomalus   4 4
No Yes Pichia pastoris GS115   4 4
No Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1   3 3
No Yes Yarrowia lipolytica CLIB122   4 4
No Yes Candida lusitaniae ATCC 42720   5 5
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   4 4
No Yes Vanderwaltozyma polyspora DSM 70294   5 5
No Yes Candida glabrata CBS138   4 4
No Yes Kluyveromyces thermotolerans CBS 6340   4 4
No Yes Lachancea kluyveri   4 4
No Yes Kluyveromyces waltii   4 4
No Yes Ashbya gossypii ATCC 10895   3 3
No Yes Zygosaccharomyces rouxii   3 3
No Yes Saccharomyces mikatae MIT   4 4
No Yes Saccharomyces paradoxus MIT   4 4
No Yes Saccharomyces cerevisiae 76 Baker's yeast 4 4
No Yes Saccharomyces bayanus MIT   4 4
No Yes Kluyveromyces lactis   4 4
No Yes Schizosaccharomyces cryophilus OY26 22   2 2
No Yes Schizosaccharomyces octosporus yFS286   2 2
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Schizosaccharomyces pombe Fission yeast 2 2
No Yes Catenaria anguillulae PL171 v1.0   17 17
No Yes Allomyces macrogynus ATCC 38327   10 10
No Yes Spizellomyces punctatus DAOM BR117   5 5
No Yes Selaginella moellendorffii   33 33
No Yes Pinus taeda Loblolly pine 18 17
No Yes Picea abies Norway spruce 12 12
No Yes Eucalyptus grandis v201 Rose gum 48 48
No Yes Theobroma cacao B97-61/B2 v1 Cacao 18 18
No Yes Gossypium raimondii v221   73 73
No Yes Citrus clementina v165   34 34
No Yes Citrus sinensis v154 Sweet orange 52 52
No Yes Thellungiella halophila v173   24 24
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 27 27
No Yes Capsella rubella v183   22 22
No Yes Arabidopsis lyrata Lyrate rockcress 23 23
No Yes Arabidopsis thaliana 10 Thale cress 30 30
No Yes Carica papaya Papaya 20 20
No Yes Medicago truncatula Barrel medic 53 53
No Yes Phaseolus vulgaris v186 French bean 28 28
No Yes Glycine max v109 Soybean 57 57
No Yes Cucumis sativus v122 Cucumber 30 30
No Yes Fragaria vesca Wild strawberry 16 16
No Yes Malus domestica v196 Apple 50 50
No Yes Prunus persica v139 Peach 21 21
No Yes Linum usitatissimum v200 Flax 62 61
No Yes Manihot esculenta v147 Cassava 35 35
No Yes Populus trichocarpa v156 Black cottonwood 36 36
No Yes Vitis vinifera Wine grape 21 21
No Yes Mimulus guttatus v140 Spotted monkey flower 31 31
No Yes Solanum lycopersicum v.2.3 Tomato 34 34
No Yes Solanum tuberosum Potato 45 45
No Yes Actinidia chinensis Hongyang   26 25
No Yes Aquilegia coerulea v195   34 34
No Yes Triticum urartu 22   13 13
No Yes Triticum aestivum 22 Bread wheat 50 50
No Yes Aegilops tauschii 22   24 24
No Yes Brachypodium distachyon Stiff brome 32 32
No Yes Oryza barthii 22 African wild rice 37 36
No Yes Oryza meridionalis 22   37 35
No Yes Oryza glumaepatula 22   32 32
No Yes Oryza glaberrima African rice 23 23
No Yes Oryza punctata 22   35 35
No Yes Oryza nivara 22   40 40
No Yes Oryza brachyantha 22 Malo sina 24 24
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 31 31
No Yes Oryza sativa v193 Rice 31 31
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 24 24
No Yes Panicum virgatum v202 Switchgrass 56 56
No Yes Setaria italica v164 Foxtail millet 44 44
No Yes Zea mays subsp. mays Maize 47 47
No Yes Zea mays v181 Maize 48 48
No Yes Sorghum bicolor Sorghum 30 28
No Yes Musa balbisiana Balbis banana 36 36
No Yes Musa acuminata 22 Wild Malaysian banana 26 26
No Yes Amborella trichopoda 22   18 18
No Yes Physcomitrella patens   22 22
No Yes Coccomyxa subellipsoidea sp. C-169 v2   5 5
No Yes Asterochloris sp. Cgr/DA1pho v1.0   3 3
No Yes Chlorella variabilis sp. NC64A   2 2
No Yes Chlorella vulgaris   8 8
No Yes Volvox carteri f. nagariensis   7 7
No Yes Volvox carteri v199   7 7
No Yes Chlamydomonas reinhardtii 4.0   2 2
No Yes Ostreococcus sp. RCC809   3 3
No Yes Ostreococcus lucimarinus CCE9901   3 3
No Yes Ostreococcus tauri   3 3
No Yes Bathycoccus prasinos   5 5
No Yes Micromonas sp. RCC299   6 6
No Yes Micromonas pusilla CCMP1545 v3.0   5 5
No Yes Cyanidioschyzon merolae strain 10D 22   1 1
No Yes Cyanidioschyzon merolae   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Thecamonas trahens ATCC 50062   5 5
No Yes Bigelowiella natans CCMP2755 22   9 9
No Yes Trypanosoma vivax   1 1
No Yes Trypanosoma congolense 2.4   2 2
No Yes Trypanosoma brucei gambiense v4.1   1 1
No Yes Trypanosoma brucei TREU927 v4.1   1 1
No Yes Ectocarpus siliculosus   12 12
No Yes Aureococcus anophagefferens   2 2
No Yes Albugo laibachii 22   12 11
No Yes Pythium iwayamai DAOM BR242034 22   15 15
No Yes Pythium arrhenomanes ATCC 12531 22   14 14
No Yes Pythium ultimum v1.7-2   20 19
No Yes Pythium aphanidermatum DAOM BR444 22   17 16
No Yes Pythium irregulare DAOM BR486 22   18 16
No Yes Pythium vexans DAOM BR484 22   20 18
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 22 20
No Yes Phytophthora sojae 1.1   20 19
No Yes Phytophthora infestans T30-4   17 16
No Yes Phytophthora capsici   18 17
No Yes Hyaloperonospora arabidopsidis 22   4 4
No Yes Phaeodactylum tricornutumCCAP 1055/1   3 3
No Yes Fragilariopsis cylindrus   8 8
No Yes Thalassiosira pseudonana CCMP1335   5 5
No Yes Perkinsus marinus ATCC 50983   3 3
No Yes Paramecium tetraurelia   9 9
No Yes Tetrahymena thermophila SB210 1   2 2
No Yes Ichthyophthirius multifiliis strain G5   4 4
No Yes Neospora caninum   1 1
No Yes Toxoplasma gondii VEG   1 1
No Yes Toxoplasma gondii ME49   1 1
No Yes Toxoplasma gondii GT1   1 1
No Yes Symbiodinium minutum clade B1 v1.2   12 12
No Yes Guillardia theta CCMP2712 v1.0   20 20
No Yes Emiliania huxleyi CCMP1516   5 5
No Yes Thermobaculum terrenum ATCC BAA-798   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Gloeobacter violaceus PCC 7421   4 4
No Yes Ilumatobacter coccineus   1 1
No Yes Thermobispora bispora DSM 43833   1 1
No Yes Nakamurella multipartita DSM 44233   3 3
No Yes Modestobacter marinus   1 1
No Yes Blastococcus saxobsidens DD2   1 1
No Yes Geodermatophilus obscurus DSM 43160   2 2
No Yes Frankia alni ACN14a   1 1
No Yes Thermobifida fusca YX   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   2 2
No Yes Thermomonospora curvata DSM 43183   1 1
No Yes Streptosporangium roseum DSM 43021   6 6
No Yes Streptomyces coelicolor A3(2)   2 2
No Yes Streptomyces sp. PAMC26508   2 2
No Yes Streptomyces flavogriseus ATCC 33331   2 2
No Yes Streptomyces sp. SirexAA-E   2 2
No Yes Streptomyces griseus subsp. griseus NBRC 13350   2 2
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces scabiei 87.22   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   4 4
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Saccharomonospora viridis DSM 43017   2 2
No Yes Saccharopolyspora erythraea NRRL 2338   2 2
No Yes Amycolatopsis mediterranei U32   2 2
No Yes Kribbella flavida DSM 17836   3 3
No Yes Nocardioides sp. JS614   1 1
No Yes Propionibacterium propionicum F0230a   2 2
No Yes Salinispora arenicola CNS-205   1 1
No Yes Salinispora tropica CNB-440   2 2
No Yes Verrucosispora maris AB-18-032   3 3
No Yes Actinoplanes sp. SE50/110   1 1
No Yes Actinoplanes missouriensis 431   2 2
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Gordonia sp. KTR9   2 2
No Yes Gordonia polyisoprenivorans VH2   1 1
No Yes Gordonia bronchialis DSM 43247   1 1
No Yes Rhodococcus jostii RHA1   1 1
No Yes Rhodococcus equi 103S   1 1
No Yes Rhodococcus opacus B4   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Mycobacterium massiliense str. GO 06   2 2
No Yes Mycobacterium abscessus ATCC 19977   2 2
No Yes Mycobacterium sp. JLS   2 2
No Yes Mycobacterium intracellulare ATCC 13950   2 2
No Yes Mycobacterium avium 104   2 2
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium canettii CIPT 140010059   1 1
No Yes Mycobacterium africanum GM041182   1 1
No Yes Mycobacterium tuberculosis KZN 1435   1 1
No Yes Mycobacterium tuberculosis   1 1
No Yes Mycobacterium bovis BCG str. Pasteur 1173P2   1 1
No Yes Mycobacterium rhodesiae NBB3   2 2
No Yes Mycobacterium ulcerans Agy99   1 1
No Yes Mycobacterium gilvum PYR-GCK   2 2
No Yes Mycobacterium chubuense NBB4   2 2
No Yes Mycobacterium marinum M   1 1
No Yes Mycobacterium smegmatis str. MC2 155   2 2
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Microbacterium testaceum StLB037   1 1
No Yes Intrasporangium calvum DSM 43043   2 2
No Yes Brachybacterium faecium DSM 4810   1 1
No Yes Isoptericola variabilis 225   2 2
No Yes Cellulomonas flavigena DSM 20109   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes Micrococcus luteus NCTC 2665   1 1
No Yes Gardnerella vaginalis 409-05   1 1
No Yes Arcanobacterium haemolyticum DSM 20595   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   1 1
No Yes Anaerolinea thermophila UNI-1   1 1
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Sphaerobacter thermophilus DSM 20745   6 6
No Yes Herpetosiphon aurantiacus DSM 785   2 2
No Yes Roseiflexus sp. RS-1   1 1
No Yes Roseiflexus castenholzii DSM 13941   1 1
No Yes Chloroflexus sp. MS-G   1 1
No Yes Chloroflexus sp. Y-400-fl   2 2
No Yes Chloroflexus aggregans DSM 9485   1 1
No Yes Chloroflexus aurantiacus J-10-fl   2 2
No Yes Truepera radiovictrix DSM 17093   1 1
No Yes Deinococcus gobiensis I-0   1 1
No Yes Deinococcus deserti VCD115   1 1
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Deinococcus radiodurans R1   1 1
No Yes Meiothermus silvanus DSM 9946   1 1
No Yes Meiothermus ruber DSM 1279   2 2
No Yes Finegoldia magna ATCC 29328   1 1
No Yes Natranaerobius thermophilus JW/NM-WN-LF   4 4
No Yes Clostridiales genomosp. BVAB3 str. UPII9-5   2 2
No Yes Ruminococcus sp.   1 1
No Yes Ruminococcus albus 7   1 1
No Yes Clostridium phytofermentans ISDg   1 1
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes [Ruminococcus] torques   1 1
No Yes Roseburia intestinalis   1 1
No Yes Butyrivibrio proteoclasticus B316   1 1
No Yes Butyrivibrio fibrisolvens   1 1
No Yes Clostridium novyi NT   1 1
No Yes Clostridium perfringens ATCC 13124   1 1
No Yes Coprothermobacter proteolyticus DSM 5265   2 2
No Yes Thermoanaerobacter tengcongensis MB4   1 1
No Yes Thermoanaerobacter pseudethanolicus ATCC 33223   1 1
No Yes Thermoanaerobacter sp. X514   1 1
No Yes Thermoanaerobacter wiegelii Rt8.B1   1 1
No Yes Thermoanaerobacter brockii subsp. finnii Ako-1   1 1
No Yes Lactobacillus casei ATCC 334   1 1
No Yes Lactobacillus kefiranofaciens ZW3   1 1
No Yes Lactobacillus rhamnosus Lc 705   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365   1 1
No Yes Streptococcus sp. I-P16   1 1
No Yes Streptococcus sp. I-G2   1 1
No Yes Streptococcus intermedius JTH08   1 1
No Yes Streptococcus gallolyticus UCN34   1 1
No Yes Streptococcus pseudopneumoniae IS7493   2 2
No Yes Streptococcus equi subsp. equi 4047   1 1
No Yes Streptococcus dysgalactiae subsp. equisimilis GGS_124   2 2
No Yes Streptococcus infantarius subsp. infantarius CJ18   1 1
No Yes Streptococcus mitis B6   1 1
No Yes Streptococcus parasanguinis ATCC 15912   3 3
No Yes Streptococcus pyogenes str. Manfredo   2 2
No Yes Streptococcus agalactiae A909   2 2
No Yes Streptococcus thermophilus LMD-9   1 1
No Yes Streptococcus suis P1/7   2 2
No Yes Streptococcus sanguinis SK36   1 1
No Yes Streptococcus oralis Uo5   1 1
No Yes Streptococcus gordonii str. Challis substr. CH1   3 3
No Yes Exiguobacterium sp. MH3   1 1
No Yes Exiguobacterium sp. AT1b   1 1
No Yes Exiguobacterium sibiricum 255-15   1 1
No Yes Brevibacillus brevis NBRC 100599   3 3
No Yes Paenibacillus terrae HPL-003   2 2
No Yes Paenibacillus mucilaginosus 3016   1 1
No Yes Paenibacillus polymyxa M1   1 1
No Yes Bacillus selenitireducens MLS10   1 1
No Yes Solibacillus silvestris StLB046   1 1
No Yes Lysinibacillus sphaericus C3-41   1 1
No Yes Oceanobacillus iheyensis HTE831   4 4
No Yes Halobacillus halophilus DSM 2266   3 3
No Yes Bacillus sp. JS   2 2
No Yes Bacillus sp. 1NLA3E   1 1
No Yes Bacillus amyloliquefaciens FZB42   2 2
No Yes Bacillus atrophaeus 1942   3 3
No Yes Bacillus subtilis subsp. subtilis str. 168   2 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Bacillus halodurans C-125   3 3
No Yes Bacillus weihenstephanensis KBAB4   3 3
No Yes Bacillus thuringiensis str. Al Hakam   4 4
No Yes Bacillus cereus 03BB102   4 4
No Yes Bacillus anthracis str. A0248   2 2
No Yes Bacillus pseudofirmus OF4   3 3
No Yes Bacillus clausii KSM-K16   2 2
No Yes Bacillus cellulosilyticus DSM 2522   2 2
No Yes Bacillus pumilus SAFR-032   1 1
No Yes Bacillus megaterium DSM 319   3 3
No Yes Macrococcus caseolyticus JCSC5402   1 1
No Yes Gemmatimonas aurantiaca T-27   5 5
No Yes Melioribacter roseus P3M   2 2
No Yes Ignavibacterium album JCM 16511   2 2
No Yes Chloroherpeton thalassium ATCC 35110   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   5 5
No Yes Saprospira grandis str. Lewin   2 2
No Yes Niastella koreensis GR20-10   2 2
No Yes Chitinophaga pinensis DSM 2588   2 2
No Yes Rhodothermus marinus DSM 4252   3 3
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Belliella baltica DSM 15883   2 2
No Yes Cyclobacterium marinum DSM 745   2 2
No Yes Marivirga tractuosa DSM 4126   2 2
No Yes Fibrella aestuarina   5 5
No Yes Leadbetterella byssophila DSM 17132   2 2
No Yes Dyadobacter fermentans DSM 18053   3 3
No Yes Spirosoma linguale DSM 74   5 5
No Yes Runella slithyformis DSM 19594   5 5
No Yes Parabacteroides distasonis ATCC 8503   1 1
No Yes Bacteroides sp. CF50   1 1
No Yes Bacteroides vulgatus ATCC 8482   1 1
No Yes Solitalea canadensis DSM 3403   2 2
No Yes Sphingobacterium sp. 21   3 3
No Yes Fluviicola taffensis DSM 16823   2 2
No Yes Owenweeksia hongkongensis DSM 17368   1 1
No Yes Krokinobacter sp. 4H-3-7-5   1 1
No Yes Lacinutrix sp. 5H-3-7-4   3 3
No Yes Maribacter sp. HTCC2170   2 2
No Yes Robiginitalea biformata HTCC2501   3 3
No Yes Croceibacter atlanticus HTCC2559   4 4
No Yes Aequorivita sublithincola DSM 14238   3 3
No Yes Zobellia galactanivorans   2 2
No Yes Muricauda ruestringensis DSM 13258   2 2
No Yes Cellulophaga algicola DSM 14237   1 1
No Yes Cellulophaga lytica DSM 7489   2 2
No Yes Flavobacteriaceae bacterium 3519-10   1 1
No Yes Weeksella virosa DSM 16922   1 1
No Yes Flavobacterium indicum GPTSA100-9   1 1
No Yes Flavobacterium branchiophilum FL-15   1 1
No Yes Flavobacterium columnare ATCC 49512   2 2
No Yes Isosphaera pallida ATCC 43644   1 1
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Planctomyces limnophilus DSM 3776   1 1
No Yes Rhodopirellula baltica SH 1   2 2
No Yes Pirellula staleyi DSM 6068   1 1
No Yes Opitutus terrae PB90-1   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Caldisericum exile AZM16c01   3 3
No Yes Candidatus Chloracidobacterium thermophilum B   5 5
No Yes Candidatus Solibacter usitatus Ellin6076   9 9
No Yes Granulicella tundricola MP5ACTX9   3 3
No Yes Granulicella mallensis MP5ACTX8   2 2
No Yes Candidatus Koribacter versatilis Ellin345   6 6
No Yes Terriglobus saanensis SP1PR4   5 5
No Yes Terriglobus roseus DSM 18391   3 3
No Yes Acidobacterium capsulatum ATCC 51196   1 1
No Yes Candidatus Nitrospira defluvii   1 1
No Yes Sebaldella termitidis ATCC 33386   1 1
No Yes Bacteriovorax marinus SJ   1 1
No Yes Bdellovibrio bacteriovorus HD100   2 2
No Yes Syntrophobacter fumaroxidans MPOB   1 1
No Yes Desulfatibacillum alkenivorans AK-01   1 1
No Yes Desulfomicrobium baculatum DSM 4028   1 1
No Yes Desulfovibrio piezophilus   1 1
No Yes Desulfovibrio aespoeensis Aspo-2   1 1
No Yes Desulfovibrio alaskensis G20   1 1
No Yes Desulfovibrio salexigens DSM 2638   1 1
No Yes Desulfovibrio africanus str. Walvis Bay   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Sorangium cellulosum 'So ce 56'   3 3
No Yes Anaeromyxobacter sp. Fw109-5   2 2
No Yes Anaeromyxobacter dehalogenans 2CP-1   1 1
No Yes Stigmatella aurantiaca DW4/3-1   8 8
No Yes Corallococcus coralloides DSM 2259   5 5
No Yes Myxococcus xanthus DK 1622   4 4
No Yes Myxococcus fulvus HW-1   2 2
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Delftia sp. Cs1-4   1 1
No Yes Parvularcula bermudensis HTCC2503   2 2
No Yes Asticcacaulis excentricus CB 48   2 2
No Yes Brevundimonas subvibrioides ATCC 15264   2 2
No Yes Caulobacter sp. K31   2 2
No Yes Caulobacter crescentus NA1000   3 3
No Yes Caulobacter segnis ATCC 21756   2 2
No Yes Phenylobacterium zucineum HLK1   3 3
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   1 1
No Yes Sphingobium sp. SYK-6   2 2
No Yes Sphingobium japonicum UT26S   3 3
No Yes Sphingobium chlorophenolicum L-1   3 3
No Yes Sphingomonas sp. MM-1   3 3
No Yes Sphingomonas wittichii RW1   4 4
No Yes Zymomonas mobilis subsp. mobilis NCIMB 11163   1 1
No Yes Maricaulis maris MCS10   2 2
No Yes Hirschia baltica ATCC 49814   2 2
No Yes Hyphomonas neptunium ATCC 15444   2 2
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Ketogulonigenium vulgarum WSH-001   1 1
No Yes Rhodospirillum centenum SW   2 2
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Gluconobacter oxydans 621H   1 1
No Yes Vibrio furnissii NCTC 11218   1 1
No Yes Idiomarina loihiensis L2TR   1 1
No Yes Ferrimonas balearica DSM 9799   5 5
No Yes Shewanella piezotolerans WP3   4 4
No Yes Shewanella loihica PV-4   5 5
No Yes Shewanella halifaxensis HAW-EB4   1 1
No Yes Shewanella sediminis HAW-EB3   3 3
No Yes Shewanella denitrificans OS217   3 3
No Yes Shewanella pealeana ATCC 700345   2 2
No Yes Shewanella oneidensis MR-1   6 6
No Yes Shewanella baltica OS185   4 4
No Yes Shewanella woodyi ATCC 51908   3 3
No Yes Shewanella sp. MR-4   5 5
No Yes Shewanella amazonensis SB2B   4 4
No Yes Shewanella violacea DSS12   2 2
No Yes Shewanella frigidimarina NCIMB 400   3 3
No Yes Shewanella putrefaciens CN-32   3 3
No Yes Colwellia psychrerythraea 34H   4 4
No Yes Pseudoalteromonas sp. SM9913   2 2
No Yes Pseudoalteromonas atlantica T6c   4 4
No Yes Pseudoalteromonas haloplanktis TAC125   3 3
No Yes Glaciecola sp. 4H-3-7+YE-5   4 4
No Yes Glaciecola nitratireducens FR1064   2 2
No Yes Alteromonas sp. SN2   3 3
No Yes Alteromonas macleodii str. 'Deep ecotype'   3 3
No Yes Kangiella koreensis DSM 16069   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Rhodanobacter denitrificans   2 2
No Yes Frateuria aurantia DSM 6220   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Stenotrophomonas maltophilia K279a   4 4
No Yes Xylella fastidiosa M23   2 2
No Yes Xanthomonas axonopodis pv. citri str. 306   6 6
No Yes Xanthomonas oryzae pv. oryzae PXO99A   3 3
No Yes Xanthomonas campestris pv. campestris str. B100   4 4
No Yes Rahnella sp. Y9602   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Pantoea sp. At-9b   1 1
No Yes Pseudomonas stutzeri A1501   1 1
No Yes Pseudomonas mendocina ymp   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Candidatus Nitrosopumilus sp. AR2   1 1
No Yes Nitrosopumilus maritimus SCM1   1 1
No Yes Candidatus Korarchaeum cryptofilum OPF8   1 1
No Yes Thermogladius cellulolyticus 1633   1 1
No Yes Ignisphaera aggregans DSM 17230   1 1
No Yes Thermofilum sp. 1910b   1 1
No Yes Thermofilum pendens Hrk 5   1 1
No Yes Thermoproteus uzoniensis 768-20   1 1
No Yes Thermoproteus tenax Kra 1   1 1
No Yes halophilic archaeon DL31   4 4
No Yes Thermococcus sp. 4557   1 1
No Yes Thermococcus barophilus MP   1 1
No Yes Pyrococcus horikoshii OT3   1 1
No Yes Salinarchaeum sp. Harcht-Bsk1   1 1
No Yes Halopiger xanaduensis SH-6   2 2
No Yes Haloterrigena turkmenica DSM 5511   2 2
No Yes Natrinema sp. J7-2   1 1
No Yes Natrialba magadii ATCC 43099   5 5
No Yes Halorubrum lacusprofundi ATCC 49239   2 2
No Yes Haloquadratum walsbyi DSM 16790   1 1
No Yes Halogeometricum borinquense DSM 11551   2 2
No Yes Haloferax mediterranei ATCC 33500   2 2
No Yes Haloferax volcanii DS2   2 2
No Yes Halomicrobium mukohataei DSM 12286   1 1
No Yes Haloarcula hispanica ATCC 33960   1 1
No Yes Haloarcula marismortui ATCC 43049   1 1
No Yes Halalkalicoccus jeotgali B3   2 2
No Yes Halobacterium salinarum R1   2 2
No Yes Halobacterium sp. NRC-1   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 19 19
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 10 10
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 4 4
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 6 6
No Yes Cryptococcus neoformans var. grubii H99   4 4
No Yes Cryptococcus neoformans B-3501A   4 4
No Yes Cryptococcus neoformans JEC21   3 3
No Yes Paracoccidioides brasiliensis Pb01   3 3
No Yes Paracoccidioides brasiliensis Pb03   5 5
No Yes Coccidioides posadasii str. Silveira   5 5
No Yes Coccidioides immitis RMSCC 3703   4 4
No Yes Coccidioides immitis RMSCC 2394   5 5
No Yes Coccidioides immitis H538.4   5 5
No Yes Ajellomyces dermatitidis ER-3   5 5
No Yes Histoplasma capsulatum H143   4 4
No Yes Histoplasma capsulatum H88   5 5
No Yes Histoplasma capsulatum G186AR   5 5
No Yes Aspergillus fumigatus A1163   5 5
No Yes Candida albicans WO-1   4 4
No Yes Saccharomyces cerevisiae UC5   4 4
No Yes Saccharomyces cerevisiae PW5   4 4
No Yes Saccharomyces cerevisiae FL100   1 1
No Yes Saccharomyces cerevisiae CLIB324   1 1
No Yes Saccharomyces cerevisiae CBS7960   3 3
No Yes Saccharomyces cerevisiae YJM269   2 2
No Yes Saccharomyces cerevisiae T7   4 4
No Yes Saccharomyces cerevisiae FostersB   4 4
No Yes Saccharomyces cerevisiae FostersO   4 4
No Yes Saccharomyces cerevisiae VL3   4 4
No Yes Saccharomyces cerevisiae Vin13   4 4
No Yes Saccharomyces cerevisiae LalvinQA23   4 4
No Yes Saccharomyces cerevisiae AWRI796   4 4
No Yes Saccharomyces cerevisiae Sigma1278b   4 4
No Yes Saccharomyces cerevisiae W303   4 4
No Yes Saccharomyces cerevisiae JAY291   4 4
No Yes Saccharomyces cerevisiae AWRI1631   3 3
No Yes Saccharomyces cerevisiae YPS163   1 1
No Yes Saccharomyces cerevisiae M22   1 1
No Yes Saccharomyces cerevisiae T73   2 2
No Yes Saccharomyces cerevisiae CLIB215   3 3
No Yes Saccharomyces cerevisiae YJM789   4 4
No Yes Saccharomyces cerevisiae YJM789   4 4
No Yes Saccharomyces cerevisiae RM11-1a   4 4
No Yes Saccharomyces cerevisiae RM11-1a   3 3
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 4 4
No Yes Schizosaccharomyces pombe 972h-   2 2
No Yes Batrachochytrium dendrobatidis JEL423   4 4
No Yes Batrachochytrium dendrobatidis JAM81   3 3
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 19 19
No Yes Hordeum vulgare 22 Domesticated barley 41 41
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 28 28
No Yes Trypanosoma brucei Lister 427 v4.1   1 1
No Yes Neospora caninum Nc-Liverpool 6.2   1 1
No Yes Chroococcidiopsis thermalis PCC 7203   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   3 3
No Yes Nocardiopsis alba ATCC BAA-2165   2 2
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces fulvissimus DSM 40593   3 3
No Yes Streptomyces venezuelae ATCC 10712   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   3 3
No Yes Saccharothrix espanaensis DSM 44229   3 3
No Yes Amycolatopsis mediterranei RB   2 2
No Yes Amycolatopsis mediterranei S699   2 2
No Yes Amycolatopsis mediterranei S699   2 2
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Propionibacterium avidum 44067   1 1
No Yes Rhodococcus pyridinivorans SB3094   2 2
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Nocardia brasiliensis ATCC 700358   2 2
No Yes Mycobacterium sp. MOTT36Y   2 2
No Yes Mycobacterium sp. JDM601   1 1
No Yes Mycobacterium abscessus subsp. bolletii 50594   2 2
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium sp. KMS   2 2
No Yes Mycobacterium sp. MCS   2 2
No Yes Mycobacterium yongonense 05-1390   2 2
No Yes Mycobacterium intracellulare MOTT-64   2 2
No Yes Mycobacterium indicus pranii MTCC 9506   2 2
No Yes Mycobacterium intracellulare MOTT-02   2 2
No Yes Mycobacterium avium subsp. paratuberculosis MAP4   2 2
No Yes Mycobacterium avium subsp. paratuberculosis K-10   2 2
No Yes Mycobacterium canettii CIPT 140070017   1 1
No Yes Mycobacterium canettii CIPT 140060008   1 1
No Yes Mycobacterium canettii CIPT 140070008   1 1
No Yes Mycobacterium canettii CIPT 140070010   1 1
No Yes Mycobacterium tuberculosis EAI5/NITR206   1 1
No Yes Mycobacterium tuberculosis EAI5   1 1
No Yes Mycobacterium tuberculosis CAS/NITR204   1 1
No Yes Mycobacterium tuberculosis str. Beijing/NITR203   1 1
No Yes Mycobacterium tuberculosis UT205   1 1
No Yes Mycobacterium tuberculosis CTRI-2   1 1
No Yes Mycobacterium tuberculosis str. Erdman = ATCC 35801   1 1
No Yes Mycobacterium tuberculosis KZN 605   1 1
No Yes Mycobacterium tuberculosis KZN 4207   1 1
No Yes Mycobacterium tuberculosis CCDC5180   1 1
No Yes Mycobacterium tuberculosis CCDC5079   1 1
No Yes Mycobacterium tuberculosis CCDC5079   1 1
No Yes Mycobacterium tuberculosis H37Ra   1 1
No Yes Mycobacterium tuberculosis str. Haarlem   1 1
No Yes Mycobacterium tuberculosis F11   1 1
No Yes Mycobacterium tuberculosis H37Rv   1 1
No Yes Mycobacterium tuberculosis CDC1551   1 1
No Yes Mycobacterium bovis AF2122/97   1 1
No Yes Mycobacterium bovis BCG str. Korea 1168P   1 1
No Yes Mycobacterium bovis BCG str. Mexico   1 1
No Yes Mycobacterium bovis BCG str. Tokyo 172   1 1
No Yes Mycobacterium gilvum Spyr1   2 2
No Yes Mycobacterium smegmatis str. MC2 155   2 2
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Gardnerella vaginalis HMP9231   1 1
No Yes Gardnerella vaginalis ATCC 14019   1 1
No Yes Actinomyces graevenitzii C83   1 1
No Yes Actinomyces odontolyticus ATCC 17982   4 4
No Yes Chthonomonas calidirosea T49   1 1
No Yes Deinococcus peraridilitoris DSM 19664   4 4
No Yes Clostridium acidurici 9a   1 1
No Yes Clostridium saccharolyticum Clostridium cf. saccharolyticum K10   1 1
No Yes Coprococcus catus GD/7   1 1
No Yes Roseburia intestinalis XB6B4   1 1
No Yes Clostridium perfringens SM101   1 1
No Yes Clostridium botulinum BKT015925   1 1
No Yes Thermoanaerobacter sp. X513   1 1
No Yes Carnobacterium maltaromaticum LMA28   1 1
No Yes Lactobacillus paracasei subsp. paracasei 8700:2   1 1
No Yes Lactobacillus casei LOCK919   1 1
No Yes Lactobacillus casei W56   1 1
No Yes Lactobacillus casei LC2W   1 1
No Yes Lactobacillus casei BD-II   1 1
No Yes Lactobacillus casei BL23   1 1
No Yes Lactobacillus casei str. Zhang   1 1
No Yes Lactobacillus rhamnosus LOCK908   1 1
No Yes Lactobacillus rhamnosus LOCK900   1 1
No Yes Lactobacillus rhamnosus ATCC 8530   1 1
No Yes Lactobacillus rhamnosus GG   1 1
No Yes Lactobacillus rhamnosus GG   1 1
No Yes Lactobacillus johnsonii NCC 533   1 1
No Yes Lactobacillus helveticus H10   1 1
No Yes Lactobacillus helveticus CNRZ32   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ND02   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842   1 1
No Yes Lactobacillus delbrueckii subsp. bulgaricus 2038   1 1
No Yes Lactococcus lactis subsp. cremoris UC509.9   1 1
No Yes Lactococcus lactis subsp. cremoris SK11   1 1
No Yes Streptococcus intermedius B196   1 1
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069   1 1
No Yes Streptococcus gallolyticus subsp. gallolyticus ATCC 43143   1 1
No Yes Streptococcus equi subsp. zooepidemicus ATCC 35246   2 2
No Yes Streptococcus equi subsp. zooepidemicus MGCS10565   2 2
No Yes Streptococcus equi subsp. zooepidemicus   2 2
No Yes Streptococcus dysgalactiae subsp. equisimilis 167   2 2
No Yes Streptococcus dysgalactiae subsp. equisimilis AC-2713   2 2
No Yes Streptococcus dysgalactiae subsp. equisimilis RE378   1 1
No Yes Streptococcus iniae SF1   3 3
No Yes Streptococcus parasanguinis FW213   3 3
No Yes Streptococcus pyogenes HSC5   2 2
No Yes Streptococcus pyogenes A20   2 2
No Yes Streptococcus pyogenes MGAS1882   2 2
No Yes Streptococcus pyogenes MGAS15252   2 2
No Yes Streptococcus pyogenes Alab49   2 2
No Yes Streptococcus pyogenes MGAS10750   2 2
No Yes Streptococcus pyogenes MGAS10270   2 2
No Yes Streptococcus pyogenes MGAS2096   2 2
No Yes Streptococcus pyogenes MGAS9429   2 2
No Yes Streptococcus pyogenes MGAS6180   2 2
No Yes Streptococcus pyogenes NZ131   2 2
No Yes Streptococcus pyogenes MGAS8232   2 2
No Yes Streptococcus pyogenes MGAS10394   2 2
No Yes Streptococcus pyogenes MGAS315   2 2
No Yes Streptococcus pyogenes SSI-1   2 2
No Yes Streptococcus pyogenes M1 476   2 2
No Yes Streptococcus pyogenes MGAS5005   2 2
No Yes Streptococcus pyogenes M1 GAS   2 2
No Yes Streptococcus agalactiae ILRI112   2 2
No Yes Streptococcus agalactiae ILRI005   2 2
No Yes Streptococcus agalactiae 09mas018883   2 2
No Yes Streptococcus agalactiae 2-22   1 1
No Yes Streptococcus agalactiae SA20-06   1 1
No Yes Streptococcus agalactiae NEM316   3 3
No Yes Streptococcus agalactiae 2603V/R   2 2
No Yes Streptococcus thermophilus MN-ZLW-002   1 1
No Yes Streptococcus thermophilus JIM 8232   1 1
No Yes Streptococcus suis T15   2 2
No Yes Streptococcus suis TL13   2 2
No Yes Streptococcus suis SC070731   2 2
No Yes Streptococcus suis S735   2 2
No Yes Streptococcus suis ST3   2 2
No Yes Streptococcus suis D9   1 1
No Yes Streptococcus suis SS12   2 2
No Yes Streptococcus suis D12   2 2
No Yes Streptococcus suis ST1   1 1
No Yes Streptococcus suis A7   1 1
No Yes Streptococcus suis JS14   2 2
No Yes Streptococcus suis BM407   1 1
No Yes Streptococcus suis SC84   1 1
No Yes Streptococcus suis GZ1   2 2
No Yes Streptococcus suis 98HAH33   2 2
No Yes Streptococcus suis 05ZYH33   2 2
No Yes Exiguobacterium antarcticum B7   1 1
No Yes Paenibacillus sp. Y412MC10   1 1
No Yes Paenibacillus mucilaginosus KNP414   1 1
No Yes Paenibacillus mucilaginosus K02   1 1
No Yes Paenibacillus polymyxa CR1   1 1
No Yes Paenibacillus polymyxa SC2   1 1
No Yes Paenibacillus polymyxa E681   1 1
No Yes Amphibacillus xylanus NBRC 15112   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum sequencing   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5033   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum AS43.3   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5113   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5036   2 2
No Yes Bacillus amyloliquefaciens subsp. plantarum CAU B946   2 2
No Yes Bacillus amyloliquefaciens LFB112   2 2
No Yes Bacillus amyloliquefaciens CC178   2 2
No Yes Bacillus amyloliquefaciens Y2   1 1
No Yes Bacillus amyloliquefaciens IT-45   2 2
No Yes Bacillus amyloliquefaciens XH7   2 2
No Yes Bacillus amyloliquefaciens LL3   2 2
No Yes Bacillus amyloliquefaciens TA208   2 2
No Yes Bacillus amyloliquefaciens DSM 7   2 2
No Yes Bacillus licheniformis 9945A   2 2
No Yes Bacillus subtilis PY79   2 2
No Yes Bacillus subtilis XF-1   2 2
No Yes Bacillus subtilis QB928   2 2
No Yes Bacillus subtilis BSn5   3 3
No Yes Bacillus subtilis subsp. subtilis str. BAB-1   3 3
No Yes Bacillus subtilis subsp. subtilis str. BSP1   2 2
No Yes Bacillus subtilis subsp. subtilis str. RO-NN-1   2 2
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   2 2
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   2 2
No Yes Bacillus subtilis subsp. spizizenii str. W23   2 2
No Yes Bacillus subtilis subsp. natto BEST195   2 2
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   2 2
No Yes Bacillus infantis NRRL B-14911   4 4
No Yes Bacillus cereus subsp. cytotoxis NVH 391-98   1 1
No Yes Bacillus toyonensis BCT-7112   3 3
No Yes Bacillus thuringiensis HD-771   3 3
No Yes Bacillus thuringiensis HD-789   3 3
No Yes Bacillus thuringiensis MC28   4 4
No Yes Bacillus thuringiensis serovar chinensis CT-43   3 3
No Yes Bacillus thuringiensis YBT-1518   3 3
No Yes Bacillus thuringiensis Bt407   3 3
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   2 2
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   2 2
No Yes Bacillus thuringiensis BMB171   3 3
No Yes Bacillus thuringiensis serovar finitimus YBT-020   3 3
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   3 3
No Yes Bacillus cereus FRI-35   4 4
No Yes Bacillus cereus biovar anthracis str. CI   4 4
No Yes Bacillus cereus AH820   2 2
No Yes Bacillus cereus AH187   3 3
No Yes Bacillus cereus B4264   3 3
No Yes Bacillus cereus G9842   3 3
No Yes Bacillus cereus Q1   3 3
No Yes Bacillus cereus F837/76   4 4
No Yes Bacillus cereus NC7401   3 3
No Yes Bacillus cereus E33L   3 3
No Yes Bacillus cereus ATCC 14579   3 3
No Yes Bacillus cereus ATCC 10987   3 3
No Yes Bacillus anthracis str. H9401   2 2
No Yes Bacillus anthracis str. CDC 684   2 2
No Yes Bacillus anthracis str. 'Ames Ancestor'   2 2
No Yes Bacillus anthracis str. Sterne   2 2
No Yes Bacillus anthracis str. Ames   2 2
No Yes Bacillus megaterium WSH-002   3 3
No Yes Bacillus megaterium QM B1551   3 3
No Yes Bacillus coagulans 36D1   1 1
No Yes Rhodothermus marinus SG0.5JP17-172   3 3
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Emticicia oligotrophica DSM 17448   4 4
No Yes Psychroflexus torquis ATCC 700755   2 2
No Yes Singulisphaera acidiphila DSM 18658   4 3
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   2 2
No Yes Desulfovibrio hydrothermalis AM13 = DSM 14728   2 2
No Yes Desulfovibrio gigas DSM 1382 = ATCC 19364   1 1
No Yes Desulfovibrio desulfuricans ND132   1 1
No Yes Sorangium cellulosum So0157-2   3 3
No Yes Anaeromyxobacter sp. K   2 2
No Yes Anaeromyxobacter dehalogenans 2CP-C   2 2
No Yes Myxococcus stipitatus DSM 14675   10 10
No Yes Variovorax paradoxus EPS   1 1
No Yes Caulobacter crescentus CB15   3 3
No Yes Zymomonas mobilis subsp. mobilis ATCC 29191   1 1
No Yes Zymomonas mobilis subsp. mobilis CP4   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 10988   1 1
No Yes Zymomonas mobilis subsp. mobilis ZM4   1 1
No Yes Zymomonas mobilis subsp. pomaceae ATCC 29192   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Gluconobacter oxydans H24   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   3 3
No Yes Vibrio sp. EJY3   1 1
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Idiomarina loihiensis GSL 199   1 1
No Yes Shewanella sp. W3-18-1   3 3
No Yes Shewanella sp. ANA-3   6 6
No Yes Shewanella baltica BA175   4 4
No Yes Shewanella baltica OS678   4 4
No Yes Shewanella baltica OS117   4 4
No Yes Shewanella baltica OS223   4 4
No Yes Shewanella baltica OS195   4 4
No Yes Shewanella baltica OS155   4 4
No Yes Shewanella sp. MR-7   4 4
No Yes Shewanella putrefaciens 200   3 3
No Yes Glaciecola psychrophila 170   2 2
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   4 4
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   3 3
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   3 3
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   3 3
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   3 3
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   3 3
No Yes Alteromonas macleodii str. 'English Channel 615'   2 2
No Yes Alteromonas macleodii AltDE1   3 3
No Yes Alteromonas macleodii str. 'English Channel 673'   3 3
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   4 4
No Yes Alteromonas macleodii str. 'Black Sea 11'   4 4
No Yes Alteromonas macleodii ATCC 27126   3 3
No Yes Stenotrophomonas maltophilia D457   4 4
No Yes Stenotrophomonas maltophilia JV3   4 4
No Yes Stenotrophomonas maltophilia R551-3   4 4
No Yes Xylella fastidiosa subsp. fastidiosa GB514   2 2
No Yes Xylella fastidiosa M12   2 2
No Yes Xylella fastidiosa Temecula1   2 2
No Yes Xylella fastidiosa 9a5c   2 2
No Yes Xanthomonas citri subsp. citri Aw12879   5 5
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   4 4
No Yes Xanthomonas axonopodis pv. citrumelo F1   4 4
No Yes Xanthomonas axonopodis Xac29-1   5 5
No Yes Xanthomonas oryzae pv. oryzicola BLS256   3 3
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   3 3
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   3 3
No Yes Xanthomonas campestris pv. raphani 756C   4 4
No Yes Xanthomonas campestris pv. campestris str. 8004   4 4
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   4 4
No Yes Rahnella aquatilis HX2   1 1
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Pseudomonas stutzeri RCH2   1 1
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   1 1
No Yes Pseudomonas resinovorans NBRC 106553   1 1
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   1 1
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Candidatus Nitrosoarchaeum koreensis Candidatus Nitrosopumilus koreensis AR1   1 1
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Halovivax ruber XH-70   3 3
No Yes Natrinema pellirubrum DSM 15624   1 1
No Yes Natronococcus occultus SP4   2 2
No Yes Natronobacterium gregoryi SP2   1 1
No Yes Haloquadratum walsbyi C23   1 1
No Yes Haloarcula hispanica N601   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 59 59
No Yes Homo sapiens (NCBI version) Human 27 27
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 17 17
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 3 3
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 3 3
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Moniliophthora perniciosa FA553 (Genome survey)   3 3
No Yes Picea sitchensis (Incomplete) Sitka spruce 2 2
No Yes Lotus japonicus (Early assembly)   22 22
No Yes Malus x domestica (Duplicate) Apple 50 50
No Yes Ricinus communis (Early assembly) Castor bean 23 23
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   55 55
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 34 34
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 34 34
No Yes Phoenix dactylifera (Early draft) Date palm 5 5
No Yes Mycobacterium tuberculosis H37Rv (Duplicate of ex)   1 1
No Yes Homo sapiens 69_37 Human 19 19
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 16 16
No Yes Gorilla gorilla 69_3.1 Western gorilla 17 17
No Yes Pongo abelii 69_2 Sumatran orangutan 17 17
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 14 14
No Yes Macaca mulatta 69_1 Rhesus monkey 15 15
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 17 17
No Yes Otolemur garnettii 69_3 Small-eared galago 17 17
No Yes Microcebus murinus 69_1 Gray mouse lemur 18 16
No Yes Rattus norvegicus 69_3.4 Norway rat 15 15
No Yes Mus musculus 69_38 House mouse 17 17
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 14 14
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 13 13
No Yes Cavia porcellus 69_3 Domestic guinea pig 11 11
No Yes Oryctolagus cuniculus 69_2 Rabbit 15 15
No Yes Ochotona princeps 69 American pika 12 11
No Yes Tupaia belangeri 69 Northern tree shrew 10 10
No Yes Sus scrofa 69_10.2 Pig 16 16
No Yes Bos taurus 69_3.1 Cattle 15 15
No Yes Vicugna pacos 69_1 Alpaca 10 9
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 14 14
No Yes Mustela putorius furo 69_1.0 Domestic ferret 15 15
No Yes Ailuropoda melanoleuca 69_1 Giant panda 18 18
No Yes Canis familiaris 69_3.1 Dog 13 13
No Yes Felis catus 69 Domestic cat 13 13
No Yes Equus caballus 69_2 Horse 17 17
No Yes Myotis lucifugus 69_2.0 Little brown bat 16 16
No Yes Pteropus vampyrus 69_1 Large flying fox 18 17
No Yes Sorex araneus 69_1 European shrew 7 7
No Yes Erinaceus europaeus 69 Western European hedgehog 11 11
No Yes Procavia capensis 69_1 Cape rock hyrax 14 13
No Yes Loxodonta africana 69_3 African savanna elephant 13 13
No Yes Echinops telfairi 69 Small Madagascar hedgehog 17 16
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 10 9
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 9 9
No Yes Macropus eugenii 69_1.0 Tammar wallaby 17 16
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 15 15
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 17 17
No Yes Ornithorhynchus anatinus 69_5 Platypus 12 12
No Yes Petromyzon marinus 69_7.0 Sea lamprey 2 2
No Yes Meleagris gallopavo 69_2 Turkey 11 11
No Yes Gallus gallus 69_2 Chicken 13 13
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 13 13
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 14 14
No Yes Anolis carolinensis 69_2.0 Green anole 12 12
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 13 13
No Yes Latimeria chalumnae 69_1 Coelacanth 13 13
No Yes Gadus morhua 69_1 Atlantic cod 13 13
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 14 14
No Yes Takifugu rubripes 69_4 Torafugu 13 13
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 13 13
No Yes Oryzias latipes 69_1 Japanese medaka 11 11
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 16 16
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 15 15
No Yes Danio rerio 69_9 Zebrafish 18 18
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 12 12
No Yes Ciona intestinalis 69 Vase tunicate 11 10
No Yes Drosophila melanogaster 69_5 Fruit fly 4 4
No Yes Caenorhabditis elegans 69_215 Roundworm 4 4
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 4 4
No Yes Arabidopsis thaliana 10 Thale cress 22 22
No Yes 1_050719N (meta-genome)   3 3
No Yes 2_050719S (meta-genome)   5 5
No Yes 3_050719R (meta-genome)   10 10
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   21 21
No Yes 4_Deep_abyss (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   14 14
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   4 4
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   18 18
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   16 16
No Yes Combined (meta-genome)   5 5
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   30 30
No Yes Dump top (Dump top) (meta-genome)   20 20
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   7 7
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   9 9
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   6 6
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   5 5
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   5 5
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   6 6
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   15 15
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   8 8
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   11 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   7 7
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   7 7
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   10 10
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   12 11
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   38 38
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   12 12
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   15 15
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   2 2
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   18 18
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   9 8
No Yes NCBI 2017_08 genome   48251 48222
No Yes Nymph Lake Bulk Water (meta-genome)   1 1
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   19 19
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   3 3
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   4 4
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   8 8
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   11 11
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   4 4
No Yes Sludge/US, Jazz Assembly (meta-genome)   2 2
No Yes Sludge/US, Phrap Assembly (meta-genome)   5 5
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   35 35
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   22 22
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   34 34
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   34 34
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   20 20
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   43 43
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   37 37
No Yes STRING v9.0.5 (STRING)   1503 1493
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   2 2
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   27 27
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   11 11
No Yes Uniprot 2018_03 genome   27474 27401
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   2 2
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   9 9
No Yes Global Ocean Sampling Expedition (GOS)   427 427
No Yes NCBI plasmid sequences (Plasmids)   15 15
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   117 117
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   223 223
No Yes TargetDB (Targets)   55 55

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.