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  Home > Genomes > Outer arm dynein light chain 1 domains in all archaeal genomes


Outer arm dynein light chain 1 superfamily domain assignments
in
all archaeal genomes


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Select to display   Genome       Domains   Proteins
No Yes ALL   27215 27215
No Yes Homo sapiens 76_38 Human 33 33
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 7 7
No Yes Gorilla gorilla 76_3.1 Western gorilla 10 10
No Yes Pongo abelii 76_2 Sumatran orangutan 10 10
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 9 9
No Yes Papio anubis 76 Olive baboon 8 7
No Yes Macaca mulatta 76_1 Rhesus monkey 9 9
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 15 15
No Yes Otolemur garnettii 76_3 Small-eared galago 8 7
No Yes Microcebus murinus 76_1 Gray mouse lemur 6 6
No Yes Rattus norvegicus 76_5.0 Norway rat 7 5
No Yes Mus musculus 76_38 House mouse 28 25
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 6 6
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 5 4
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 3 3
No Yes Cavia porcellus 76_3 Domestic guinea pig 7 7
No Yes Oryctolagus cuniculus 76_2 Rabbit 7 6
No Yes Ochotona princeps 76 American pika 9 9
No Yes Tupaia belangeri 76 Northern tree shrew 5 5
No Yes Sus scrofa 76_10.2 Pig 9 9
No Yes Bos taurus 76_3.1 Cattle 10 8
No Yes Ovis aries 76_3.1 Sheep 13 12
No Yes Vicugna pacos 76_1 Alpaca 2 2
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 9 9
No Yes Mustela putorius furo 76_1.0 Domestic ferret 9 9
No Yes Ailuropoda melanoleuca 76_1 Giant panda 6 6
No Yes Canis familiaris 76_3.1 Dog 14 14
No Yes Felis catus 76_6.2 Domestic cat 8 7
No Yes Equus caballus 76_2 Horse 7 7
No Yes Myotis lucifugus 76_2.0 Little brown bat 10 9
No Yes Pteropus vampyrus 76_1 Large flying fox 12 12
No Yes Sorex araneus 76_1 European shrew 5 5
No Yes Erinaceus europaeus 76 Western European hedgehog 8 8
No Yes Procavia capensis 76_1 Cape rock hyrax 7 7
No Yes Loxodonta africana 76_3 African savanna elephant 14 14
No Yes Echinops telfairi 76 Small Madagascar hedgehog 8 7
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 9 9
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 9 9
No Yes Macropus eugenii 76_1.0 Tammar wallaby 9 9
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 11 10
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 11 11
No Yes Ornithorhynchus anatinus 76_5 Platypus 9 9
No Yes Saccoglossus kowalevskii v3.0   21 19
No Yes Petromyzon marinus 76_7.0 Sea lamprey 6 6
No Yes Meleagris gallopavo 76_2 Turkey 12 10
No Yes Gallus gallus 76_4 Chicken 7 7
No Yes Anas platyrhynchos 76_1.0 Mallard 10 10
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 9 9
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 6 6
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 12 12
No Yes Anolis carolinensis 76_2.0 Green anole 9 8
No Yes Xenopus laevis African clawed frog 9 9
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 12 10
No Yes Latimeria chalumnae 76_1 Coelacanth 11 10
No Yes Lepisosteus oculatus 76 Spotted gar 10 9
No Yes Gadus morhua 76_1 Atlantic cod 9 9
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 10 10
No Yes Takifugu rubripes 76_4 Torafugu 18 15
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 6 6
No Yes Oryzias latipes 76_1 Japanese medaka 8 8
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 10 10
No Yes Poecilia formosa 76 Amazon molly 8 8
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 14 11
No Yes Astyanax mexicanus 76 Mexican tetra 13 12
No Yes Danio rerio 76_9 Zebrafish 16 16
No Yes Oikopleura dioica   8 8
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 11 11
No Yes Ciona intestinalis 76 Vase tunicate 13 13
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 12 12
No Yes Adineta vaga   22 20
No Yes Octopus bimaculoides 280   13 13
No Yes Crassostrea gigas 22 Pacific oyster 13 13
No Yes Lottia gigantea Owl limpet 11 11
No Yes Helobdella robusta   8 8
No Yes Capitella sp. I   23 23
No Yes Danaus plexippus OGS1.0 Monarch butterfly 8 8
No Yes Heliconius melpomene Postman butterfly 6 6
No Yes Bombyx mori Domestic silkworm 8 8
No Yes Nasonia vitripennis Jewel wasp 4 4
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 15 15
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 8 8
No Yes Linepithema humile v1.1 Argentine ant 7 7
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 7 7
No Yes Solenopsis invicta v.2.2.3 Red fire ant 7 7
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 8 8
No Yes Atta cephalotes v1.1   8 8
No Yes Camponotus floridanus v3.3 Florida carpenter ant 9 9
No Yes Lucilia cuprina Australian sheep blowfly 9 9
No Yes Drosophila grimshawi 1.3   7 7
No Yes Drosophila willistoni 1.3   11 11
No Yes Drosophila pseudoobscura 2.13   6 6
No Yes Drosophila persimilis 1.3   6 6
No Yes Drosophila suzukii   8 8
No Yes Drosophila yakuba 1.3   7 7
No Yes Drosophila simulans 1.3   9 9
No Yes Drosophila sechellia 1.3   10 10
No Yes Drosophila melanogaster 76_5 Fruit fly 15 15
No Yes Drosophila erecta 1.3   7 7
No Yes Drosophila ananassae 1.3   4 4
No Yes Drosophila virilis 1.2   5 5
No Yes Drosophila mojavensis 1.3   6 6
No Yes Megaselia scalaris 22   4 4
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 13 13
No Yes Culex pipiens quinquefasciatus Southern house mosquito 16 16
No Yes Anopheles darlingi 22 American malaria mosquito 5 5
No Yes Anopheles gambiae 49_3j African malaria mosquito 11 11
No Yes Tribolium castaneum 3.0 Red flour beetle 8 8
No Yes Pediculus humanus corporis (Early assembly) Human body louse 6 6
No Yes Acyrthosiphon pisum Pea aphid 5 5
No Yes Rhodnius prolixus 22   4 4
No Yes Daphnia pulex Common water flea 8 8
No Yes Strigamia maritima 22   15 13
No Yes Sarcoptes scabiei   2 2
No Yes Tetranychus urticae Two-spotted spider mite 4 4
No Yes Ixodes scapularis (Preliminary) Black-legged tick 6 6
No Yes Pristionchus pacificus   3 3
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Meloidogyne hapla   3 3
No Yes Onchocerca volvulus 22   3 3
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 3 3
No Yes Caenorhabditis japonica   9 9
No Yes Caenorhabditis brenneri   6 6
No Yes Caenorhabditis remanei   3 3
No Yes Caenorhabditis elegans 76_235 Roundworm 3 3
No Yes Caenorhabditis briggsae 2   3 3
No Yes Trichinella spiralis 22   2 2
No Yes Hymenolepis microstoma   7 7
No Yes Echinococcus multilocularis   6 6
No Yes Echinococcus granulosus   7 7
No Yes Taenia solium Pork tapeworm 11 11
No Yes Schistosoma mansoni   8 8
No Yes Mnemiopsis leidyi Sea walnut 7 7
No Yes Acropora digitifera v1.0   8 8
No Yes Nematostella vectensis 1.0 Starlet sea anemone 16 16
No Yes Hydra vulgaris   7 6
No Yes Amphimedon queenslandica   15 12
No Yes Trichoplax adhaerens   11 9
No Yes Proterospongia sp. ATCC 50818   10 9
No Yes Monosiga brevicollis   11 9
No Yes Sphaeroforma arctica JP610   4 4
No Yes Capsaspora owczarzaki ATCC 30864   3 3
No Yes Conidiobolus coronatus NRRL28638 v1.0   3 3
No Yes Mortierella verticillata NRRL 6337   7 7
No Yes Phycomyces blakesleeanus   4 4
No Yes Rhizopus oryzae RA 99-880   1 1
No Yes Mucor circinelloides   1 1
No Yes Rhizomucor miehei CAU432   2 2
No Yes Malassezia globosa CBS 7966   2 2
No Yes Sporisorium reilianum 22   1 1
No Yes Mixia osmundae IAM 14324 v1.0   2 2
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   4 4
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   4 4
No Yes Melampsora laricis-populina   2 2
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sporobolomyces roseus IAM 13481   2 2
No Yes Microbotryum violaceum 22   3 3
No Yes Sphaerobolus stellatus v1.0   2 2
No Yes Piloderma croceum F 1598 v1.0   3 3
No Yes Serpula lacrymans var. lacrymans S7.9   2 2
No Yes Coniophora puteana   3 3
No Yes Hydnomerulius pinastri v2.0   3 3
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   4 4
No Yes Pisolithus microcarpus 441 v1.0   1 1
No Yes Pisolithus tinctorius Marx 270 v1.0   5 5
No Yes Scleroderma citrinum Foug A v1.0   4 4
No Yes Coprinopsis cinerea okayama7 130 v3   5 5
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   2 2
No Yes Amanita muscaria Koide v1.0 Fly agaric 4 4
No Yes Galerina marginata v1.0   4 4
No Yes Hebeloma cylindrosporum h7 v2.0   3 3
No Yes Laccaria bicolor S238N-H82   4 4
No Yes Agaricus bisporus var. bisporus   2 2
No Yes Schizophyllum commune   3 3
No Yes Stereum hirsutum FP-91666 SS1 v1.0   6 6
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   3 3
No Yes Punctularia strigosozonata v1.0   3 3
No Yes Sebacina vermifera MAFF 305830 v1.0   3 3
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   2 2
No Yes Postia placenta   4 4
No Yes Wolfiporia cocos MD-104 SS10 v1.0   1 1
No Yes Fomitopsis pinicolav1.0   2 2
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 2
No Yes Phanerochaete chrysosporium RP-78 2.1   3 3
No Yes Dichomitus squalens   2 2
No Yes Trametes versicolor v1.0   3 3
No Yes Daldinia eschscholzii EC12 v1.0   3 3
No Yes Apiospora montagnei NRRL 25634 v1.0   2 2
No Yes Magnaporthe poae ATCC 64411 22   3 3
No Yes Magnaporthe grisea 70-15   5 5
No Yes Podospora anserina   6 6
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   3 3
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   3 3
No Yes Neurospora discreta FGSC 8579   3 3
No Yes Neurospora crassa OR74A   2 2
No Yes Cryphonectria parasitica Chestnut blight fungus 3 3
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Verticillium dahliae VdLs.17   2 2
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Glomerella graminicola 22   3 3
No Yes Fusarium graminearum   3 3
No Yes Nectria haematococca mpVI   4 4
No Yes Fusarium oxysporum f. sp. lycopersici 4286   4 4
No Yes Fusarium verticillioides 7600   3 3
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 2
No Yes Trichoderma atroviride   2 2
No Yes Trichoderma citrinoviride v1.0   1 1
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   2 2
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 2
No Yes Sclerotinia sclerotiorum   2 2
No Yes Blumeria graminis 22   2 2
No Yes Didymella exigua CBS 183.55 v1.0   4 4
No Yes Leptosphaeria maculans 22   3 3
No Yes Setosphaeria turcica v1.0   3 3
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   4 4
No Yes Cochliobolus victoriae FI3 v1.0   3 3
No Yes Cochliobolus carbonum 26-R-13 v1.0   4 4
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 2 2
No Yes Alternaria brassicicola   2 2
No Yes Cochliobolus lunatus m118 v2.0   2 2
No Yes Pyrenophora teres f. teres 22   4 4
No Yes Pyrenophora tritici-repentis   4 4
No Yes Stagonospora nodorum   4 4
No Yes Mycosphaerella graminicola IPO323   3 3
No Yes Zasmidium cellare ATCC 36951 v1.0   5 5
No Yes Dothistroma septosporum   2 2
No Yes Septoria musiva v1.0   4 4
No Yes Mycosphaerella fijiensis CIRAD86   2 2
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Uncinocarpus reesii 1704   3 3
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus fumigatus Af293   2 2
No Yes Aspergillus brasiliensis v1.0   2 2
No Yes Aspergillus glaucus   2 2
No Yes Aspergillus carbonarius ITEM 5010   2 2
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   2 2
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   3 3
No Yes Aspergillus niger 22   2 2
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   3 3
No Yes Aspergillus clavatus NRRL 1   3 3
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Hansenula polymorpha v2.0   2 2
No Yes Dekkera bruxellensis CBS 2499 v2.0   1 1
No Yes Pichia membranifaciensv1.0   1 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   2 2
No Yes Candida dubliniensis CD36   2 2
No Yes Candida tropicalis MYA-3404   4 4
No Yes Candida parapsilosis   1 1
No Yes Candida albicans SC5314   3 3
No Yes Lodderomyces elongisporus NRRL YB-4239   1 1
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   2 2
No Yes Pichia stipitis CBS 6054   1 1
No Yes Candida guilliermondii ATCC 6260   2 2
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   3 3
No Yes Debaromyces hansenii   2 2
No Yes Wickerhamomyces anomalus   1 1
No Yes Pichia pastoris GS115   1 1
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   1 1
No Yes Candida glabrata CBS138   1 1
No Yes Kluyveromyces waltii   1 1
No Yes Ashbya gossypii ATCC 10895   1 1
No Yes Zygosaccharomyces rouxii   1 1
No Yes Schizosaccharomyces japonicus yFS275   1 1
No Yes Catenaria anguillulae PL171 v1.0   4 4
No Yes Allomyces macrogynus ATCC 38327   19 19
No Yes Spizellomyces punctatus DAOM BR117   6 6
No Yes Dictyostelium discoideum   10 10
No Yes Dictyostelium purpureum   5 5
No Yes Entamoeba dispar 1.2   8 8
No Yes Entamoeba invadens 1.2   7 7
No Yes Entamoeba histolytica 1   9 9
No Yes Selaginella moellendorffii   16 15
No Yes Pinus taeda Loblolly pine 10 10
No Yes Picea abies Norway spruce 3 3
No Yes Eucalyptus grandis v201 Rose gum 16 16
No Yes Theobroma cacao B97-61/B2 v1 Cacao 6 6
No Yes Gossypium raimondii v221   28 28
No Yes Citrus clementina v165   6 6
No Yes Citrus sinensis v154 Sweet orange 13 13
No Yes Thellungiella halophila v173   3 3
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 7 7
No Yes Capsella rubella v183   7 7
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 4 4
No Yes Carica papaya Papaya 4 4
No Yes Medicago truncatula Barrel medic 13 13
No Yes Phaseolus vulgaris v186 French bean 10 10
No Yes Glycine max v109 Soybean 17 17
No Yes Cucumis sativus v122 Cucumber 9 9
No Yes Fragaria vesca Wild strawberry 6 6
No Yes Malus domestica v196 Apple 14 14
No Yes Prunus persica v139 Peach 6 6
No Yes Linum usitatissimum v200 Flax 7 7
No Yes Manihot esculenta v147 Cassava 11 11
No Yes Populus trichocarpa v156 Black cottonwood 12 12
No Yes Vitis vinifera Wine grape 6 6
No Yes Mimulus guttatus v140 Spotted monkey flower 3 3
No Yes Solanum lycopersicum v.2.3 Tomato 4 4
No Yes Solanum tuberosum Potato 10 10
No Yes Actinidia chinensis Hongyang   4 4
No Yes Aquilegia coerulea v195   16 16
No Yes Triticum urartu 22   4 4
No Yes Triticum aestivum 22 Bread wheat 14 14
No Yes Aegilops tauschii 22   4 4
No Yes Brachypodium distachyon Stiff brome 8 8
No Yes Oryza barthii 22 African wild rice 9 9
No Yes Oryza meridionalis 22   1 1
No Yes Oryza glumaepatula 22   9 9
No Yes Oryza glaberrima African rice 5 5
No Yes Oryza punctata 22   7 7
No Yes Oryza nivara 22   10 10
No Yes Oryza brachyantha 22 Malo sina 7 7
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 12 12
No Yes Oryza sativa v193 Rice 12 12
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 9 9
No Yes Panicum virgatum v202 Switchgrass 12 12
No Yes Setaria italica v164 Foxtail millet 5 5
No Yes Zea mays subsp. mays Maize 10 10
No Yes Zea mays v181 Maize 11 11
No Yes Sorghum bicolor Sorghum 4 4
No Yes Musa balbisiana Balbis banana 10 10
No Yes Musa acuminata 22 Wild Malaysian banana 9 9
No Yes Amborella trichopoda 22   4 4
No Yes Physcomitrella patens   7 7
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   11 11
No Yes Chlorella variabilis sp. NC64A   3 3
No Yes Volvox carteri f. nagariensis   8 8
No Yes Volvox carteri v199   9 8
No Yes Chlamydomonas reinhardtii 4.0   9 9
No Yes Ostreococcus sp. RCC809   4 4
No Yes Ostreococcus lucimarinus CCE9901   3 3
No Yes Ostreococcus tauri   2 2
No Yes Bathycoccus prasinos   1 1
No Yes Micromonas sp. RCC299   9 9
No Yes Micromonas pusilla CCMP1545 v3.0   5 5
No Yes Thecamonas trahens ATCC 50062   9 9
No Yes Bigelowiella natans CCMP2755 22   15 15
No Yes Giardia lamblia 2.3   4 4
No Yes Cyanophora paradoxa   50 50
No Yes Leishmania mexicana 2.4   8 7
No Yes Leishmania major strain Friedlin   8 7
No Yes Leishmania infantum JPCM5 2.4   6 6
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   8 8
No Yes Trypanosoma vivax   7 7
No Yes Trypanosoma cruzi strain CL Brener   7 7
No Yes Trypanosoma congolense 2.4   15 11
No Yes Trypanosoma brucei gambiense v4.1   8 8
No Yes Trypanosoma brucei TREU927 v4.1   9 9
No Yes Ectocarpus siliculosus   10 10
No Yes Aureococcus anophagefferens   6 6
No Yes Albugo laibachii 22   19 19
No Yes Pythium iwayamai DAOM BR242034 22   14 14
No Yes Pythium arrhenomanes ATCC 12531 22   12 12
No Yes Pythium ultimum v1.7-2   16 16
No Yes Pythium aphanidermatum DAOM BR444 22   6 6
No Yes Pythium irregulare DAOM BR486 22   11 10
No Yes Pythium vexans DAOM BR484 22   10 10
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 10 10
No Yes Phytophthora sojae 1.1   14 14
No Yes Phytophthora infestans T30-4   10 10
No Yes Phytophthora capsici   12 12
No Yes Hyaloperonospora arabidopsidis 22   2 2
No Yes Phaeodactylum tricornutumCCAP 1055/1   1 1
No Yes Fragilariopsis cylindrus   3 3
No Yes Thalassiosira pseudonana CCMP1335   5 5
No Yes Perkinsus marinus ATCC 50983   5 5
No Yes Paramecium tetraurelia   24 22
No Yes Tetrahymena thermophila SB210 1   16 14
No Yes Ichthyophthirius multifiliis strain G5   5 5
No Yes Cryptosporidium hominis   1 1
No Yes Cryptosporidium muris   1 1
No Yes Neospora caninum   7 7
No Yes Toxoplasma gondii VEG   9 9
No Yes Toxoplasma gondii ME49   9 9
No Yes Toxoplasma gondii GT1   9 9
No Yes Plasmodium falciparum 3D7   5 4
No Yes Plasmodium vivax SaI-1 7.0   3 3
No Yes Plasmodium knowlesi strain H   5 5
No Yes Plasmodium chabaudi   4 4
No Yes Plasmodium berghei ANKA   3 3
No Yes Symbiodinium minutum clade B1 v1.2   11 11
No Yes Naegleria gruberi   9 9
No Yes Trichomonas vaginalis   23 23
No Yes Guillardia theta CCMP2712 v1.0   21 21
No Yes Emiliania huxleyi CCMP1516   4 3
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Calothrix sp. PCC 7507   1 1
No Yes Natranaerobius thermophilus JW/NM-WN-LF   2 2
No Yes Clostridium clariflavum DSM 19732   2 2
No Yes Pelotomaculum thermopropionicum SI   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   1 1
No Yes Lactobacillus plantarum JDM1   1 1
No Yes Listeria seeligeri serovar 1/2b str. SLCC3954   1 1
No Yes Listeria ivanovii subsp. ivanovii PAM 55   2 2
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus cellulosilyticus DSM 2522   1 1
No Yes Chlorobium tepidum TLS   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Saprospira grandis str. Lewin   1 1
No Yes Flexibacter litoralis DSM 6794   2 2
No Yes Spirosoma linguale DSM 74   1 1
No Yes Flavobacterium johnsoniae UW101   2 2
No Yes Candidatus Protochlamydia amoebophila UWE25   1 1
No Yes Turneriella parva DSM 21527   1 1
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. L550   1 1
No Yes Leptospira interrogans serovar Lai str. IPAV   6 6
No Yes Treponema azotonutricium ZAS-9   1 1
No Yes Leptotrichia buccalis C-1013-b   1 1
No Yes Bacteriovorax marinus SJ   1 1
No Yes Arcobacter nitrofigilis DSM 7299   1 1
No Yes Desulfatibacillum alkenivorans AK-01   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Cellvibrio japonicus Ueda107   1 1
No Yes Vibrio sp. Ex25   1 1
No Yes Vibrio harveyi ATCC BAA-1116   1 1
No Yes Vibrio parahaemolyticus RIMD 2210633   1 1
No Yes Vibrio splendidus LGP32   1 1
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Pseudomonas sp. VLB120   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 20 15
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 11 11
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 12 12
No Yes Ascaris suum Victoria/Ghent Pig roundworm 3 3
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 3 3
No Yes Cryptococcus neoformans var. grubii H99   3 3
No Yes Cryptococcus neoformans B-3501A   2 2
No Yes Cryptococcus neoformans JEC21   2 2
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Aspergillus fumigatus A1163   2 2
No Yes Candida albicans WO-1   3 3
No Yes Batrachochytrium dendrobatidis JEL423   8 6
No Yes Batrachochytrium dendrobatidis JAM81   5 5
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 4 4
No Yes Hordeum vulgare 22 Domesticated barley 19 19
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 7 7
No Yes Trypanosoma brucei Lister 427 v4.1   8 8
No Yes Neospora caninum Nc-Liverpool 6.2   7 7
No Yes Plasmodium falciparum HB3   3 3
No Yes Chamaesiphon minutus PCC 6605   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Arthrospira platensis NIES-39   1 1
No Yes Cyanothece sp. PCC 7425   2 2
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Desulfitobacterium dichloroeliminans LMG P-21439   1 1
No Yes Desulfitobacterium hafniense DCB-2   1 1
No Yes Clostridium tetani genome 12124569   1 1
No Yes Lactobacillus plantarum subsp. plantarum ST-III   1 1
No Yes Thermobacillus composti KWC4   1 1
No Yes Listeria monocytogenes EGD sequence   1 1
No Yes Listeria monocytogenes J1816   1 1
No Yes Listeria monocytogenes SLCC2376   1 1
No Yes Listeria monocytogenes SLCC5850   1 1
No Yes Listeria monocytogenes SLCC2479   1 1
No Yes Listeria monocytogenes SLCC7179   1 1
No Yes Listeria monocytogenes serotype 1/2c str. SLCC2372   1 1
No Yes Listeria monocytogenes 08-5578   1 1
No Yes Listeria monocytogenes 08-5923   1 1
No Yes Listeria monocytogenes 10403S   1 1
No Yes Listeria monocytogenes Finland 1998   1 1
No Yes Listeria monocytogenes FSL R2-561   1 1
No Yes Listeria monocytogenes EGD-e   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   1 1
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. JB197   1 1
No Yes Leptospira interrogans serovar Lai str. 56601   5 5
No Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   3 3
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   2 2
No Yes Vibrio parahaemolyticus BB22OP   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas fluorescens Pf0-1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 33 33
No Yes Homo sapiens (NCBI version) Human 7 7
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 8 7
No Yes Heliconius numata (Incomplete)   5 5
No Yes Loa loa v3.3 (Request) Eye worm 4 4
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 2 2
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 3 3
No Yes Moniliophthora perniciosa FA553 (Genome survey)   3 3
No Yes Encephalitozoon intestinalis (endoparasite)   2 2
No Yes Encephalitozoon cuniculi (endoparasite)   2 2
No Yes Lotus japonicus (Early assembly)   6 6
No Yes Malus x domestica (Duplicate) Apple 14 14
No Yes Ricinus communis (Early assembly) Castor bean 8 8
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   9 9
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 5 5
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 4 4
No Yes Phoenix dactylifera (Early draft) Date palm 7 7
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   1 1
No Yes Homo sapiens 69_37 Human 5 5
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 6 6
No Yes Gorilla gorilla 69_3.1 Western gorilla 8 8
No Yes Pongo abelii 69_2 Sumatran orangutan 10 10
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 8 8
No Yes Macaca mulatta 69_1 Rhesus monkey 7 7
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 5 5
No Yes Otolemur garnettii 69_3 Small-eared galago 8 7
No Yes Microcebus murinus 69_1 Gray mouse lemur 6 6
No Yes Rattus norvegicus 69_3.4 Norway rat 8 7
No Yes Mus musculus 69_38 House mouse 8 7
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 6 6
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 5 4
No Yes Cavia porcellus 69_3 Domestic guinea pig 6 6
No Yes Oryctolagus cuniculus 69_2 Rabbit 6 6
No Yes Ochotona princeps 69 American pika 9 9
No Yes Tupaia belangeri 69 Northern tree shrew 5 5
No Yes Sus scrofa 69_10.2 Pig 9 9
No Yes Bos taurus 69_3.1 Cattle 8 7
No Yes Vicugna pacos 69_1 Alpaca 2 2
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 9 9
No Yes Mustela putorius furo 69_1.0 Domestic ferret 9 9
No Yes Ailuropoda melanoleuca 69_1 Giant panda 5 5
No Yes Canis familiaris 69_3.1 Dog 6 6
No Yes Felis catus 69 Domestic cat 9 9
No Yes Equus caballus 69_2 Horse 7 7
No Yes Myotis lucifugus 69_2.0 Little brown bat 10 9
No Yes Pteropus vampyrus 69_1 Large flying fox 12 12
No Yes Sorex araneus 69_1 European shrew 5 5
No Yes Erinaceus europaeus 69 Western European hedgehog 8 8
No Yes Procavia capensis 69_1 Cape rock hyrax 7 7
No Yes Loxodonta africana 69_3 African savanna elephant 10 10
No Yes Echinops telfairi 69 Small Madagascar hedgehog 8 7
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 4 4
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 9 9
No Yes Macropus eugenii 69_1.0 Tammar wallaby 9 9
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 10 9
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 11 11
No Yes Ornithorhynchus anatinus 69_5 Platypus 8 8
No Yes Petromyzon marinus 69_7.0 Sea lamprey 4 4
No Yes Meleagris gallopavo 69_2 Turkey 8 8
No Yes Gallus gallus 69_2 Chicken 9 9
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 9 9
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 12 12
No Yes Anolis carolinensis 69_2.0 Green anole 9 9
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 7 7
No Yes Latimeria chalumnae 69_1 Coelacanth 10 9
No Yes Gadus morhua 69_1 Atlantic cod 9 9
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 9 9
No Yes Takifugu rubripes 69_4 Torafugu 10 7
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 6 6
No Yes Oryzias latipes 69_1 Japanese medaka 6 6
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 10 10
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 10 7
No Yes Danio rerio 69_9 Zebrafish 7 7
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 8 8
No Yes Ciona intestinalis 69 Vase tunicate 10 10
No Yes Drosophila melanogaster 69_5 Fruit fly 8 8
No Yes Caenorhabditis elegans 69_215 Roundworm 3 3
No Yes Arabidopsis thaliana 10 Thale cress 3 3
No Yes 1_050719N (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   1 1
No Yes 3_050719R (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   3 3
No Yes 4_Deep_abyss (meta-genome)   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   2 2
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   2 2
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Combined (meta-genome)   3 3
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   7 7
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   3 3
No Yes Dump bottom (Dump bottom) (meta-genome)   8 8
No Yes Dump top (Dump top) (meta-genome)   6 6
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   4 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   6 6
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   2 2
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   2 2
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   2 2
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes Mouse Gut Community lean2 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   11321 11056
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   4 4
No Yes Protozoadb 2010_08 (Protozoadb)   188 183
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   7 7
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   3 3
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   14 14
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   5 5
No Yes STRING v9.0.5 (STRING)   740 725
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   2 2
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   7 7
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   3 3
No Yes Termite Protist Endosymbiont Community (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   9046 8898
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   4 4
No Yes Global Ocean Sampling Expedition (GOS)   81 81
No Yes NCBI plasmid sequences (Plasmids)   3 3
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   6 6
No Yes TargetDB (Targets)   17 17

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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