Select to display Genome Domains Proteins No ALL 107715 107715 Yes Homo sapiens 76_38 Human 71 71 Yes Pan troglodytes 76_2.1.4 Chimpanzee 23 23 Yes Gorilla gorilla 76_3.1 Western gorilla 33 33 Yes Pongo abelii 76_2 Sumatran orangutan 22 22 Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 27 27 Yes Papio anubis 76 Olive baboon 24 24 Yes Macaca mulatta 76_1 Rhesus monkey 42 42 Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 42 42 Yes Otolemur garnettii 76_3 Small-eared galago 24 24 Yes Microcebus murinus 76_1 Gray mouse lemur 18 18 Yes Rattus norvegicus 76_5.0 Norway rat 26 26 Yes Mus musculus 76_38 House mouse 43 43 Yes Dipodomys ordii 76_1 Ord's kangaroo rat 18 18 Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 31 31 Yes Heterocephalus glaber v1.7-2 Naked mole-rat 21 21 Yes Cavia porcellus 76_3 Domestic guinea pig 28 28 Yes Oryctolagus cuniculus 76_2 Rabbit 25 25 Yes Ochotona princeps 76 American pika 17 17 Yes Tupaia belangeri 76 Northern tree shrew 15 15 Yes Sus scrofa 76_10.2 Pig 36 36 Yes Bos taurus 76_3.1 Cattle 22 22 Yes Ovis aries 76_3.1 Sheep 26 26 Yes Vicugna pacos 76_1 Alpaca 18 18 Yes Tursiops truncatus 76_1 Bottlenose dolphin 19 19 Yes Mustela putorius furo 76_1.0 Domestic ferret 22 22 Yes Ailuropoda melanoleuca 76_1 Giant panda 29 29 Yes Canis familiaris 76_3.1 Dog 31 31 Yes Felis catus 76_6.2 Domestic cat 20 20 Yes Equus caballus 76_2 Horse 25 25 Yes Myotis lucifugus 76_2.0 Little brown bat 23 23 Yes Pteropus vampyrus 76_1 Large flying fox 21 21 Yes Sorex araneus 76_1 European shrew 17 17 Yes Erinaceus europaeus 76 Western European hedgehog 20 20 Yes Procavia capensis 76_1 Cape rock hyrax 17 16 Yes Loxodonta africana 76_3 African savanna elephant 27 27 Yes Echinops telfairi 76 Small Madagascar hedgehog 17 17 Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 25 25 Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 17 17 Yes Macropus eugenii 76_1.0 Tammar wallaby 20 20 Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 27 27 Yes Monodelphis domestica 76_5 Gray short-tailed opossum 20 20 Yes Ornithorhynchus anatinus 76_5 Platypus 21 21 Yes Saccoglossus kowalevskii v3.0 100 80 Yes Petromyzon marinus 76_7.0 Sea lamprey 15 15 Yes Meleagris gallopavo 76_2 Turkey 32 32 Yes Gallus gallus 76_4 Chicken 28 28 Yes Anas platyrhynchos 76_1.0 Mallard 25 25 Yes Taeniopygia guttata 76_3.2.4 Zebra finch 29 29 Yes Ficedula albicollis 76_1.0 Collared flycatcher 25 25 Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 26 26 Yes Anolis carolinensis 76_2.0 Green anole 29 29 Yes Xenopus laevis African clawed frog 25 25 Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 27 27 Yes Latimeria chalumnae 76_1 Coelacanth 31 31 Yes Lepisosteus oculatus 76 Spotted gar 33 33 Yes Gadus morhua 76_1 Atlantic cod 50 49 Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 24 24 Yes Takifugu rubripes 76_4 Torafugu 61 61 Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 24 24 Yes Oryzias latipes 76_1 Japanese medaka 21 21 Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 25 25 Yes Poecilia formosa 76 Amazon molly 30 30 Yes Oreochromis niloticus 76_1.0 Nile tilapia 31 31 Yes Astyanax mexicanus 76 Mexican tetra 27 27 Yes Danio rerio 76_9 Zebrafish 48 48 Yes Oikopleura dioica 2 2 Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 10 10 Yes Ciona intestinalis 76 Vase tunicate 13 13 Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 293 278 Yes Adineta vaga 92 83 Yes Octopus bimaculoides 280 38 33 Yes Crassostrea gigas 22 Pacific oyster 125 111 Yes Lottia gigantea Owl limpet 88 78 Yes Helobdella robusta 16 15 Yes Capitella sp. I 101 92 Yes Danaus plexippus OGS1.0 Monarch butterfly 13 13 Yes Heliconius melpomene Postman butterfly 10 10 Yes Bombyx mori Domestic silkworm 12 12 Yes Nasonia vitripennis Jewel wasp 8 8 Yes Apis mellifera 38.2d (Not maintained) Honey bee 17 17 Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 7 7 Yes Linepithema humile v1.1 Argentine ant 7 7 Yes Pogonomyrmex barbatus v1.2 Red harvester ant 7 7 Yes Solenopsis invicta v.2.2.3 Red fire ant 5 5 Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 7 7 Yes Atta cephalotes v1.1 6 6 Yes Camponotus floridanus v3.3 Florida carpenter ant 8 8 Yes Lucilia cuprina Australian sheep blowfly 11 9 Yes Drosophila grimshawi 1.3 10 10 Yes Drosophila willistoni 1.3 16 16 Yes Drosophila pseudoobscura 2.13 16 16 Yes Drosophila persimilis 1.3 17 17 Yes Drosophila suzukii 11 11 Yes Drosophila yakuba 1.3 14 14 Yes Drosophila simulans 1.3 11 11 Yes Drosophila sechellia 1.3 10 10 Yes Drosophila melanogaster 76_5 Fruit fly 25 25 Yes Drosophila erecta 1.3 10 10 Yes Drosophila ananassae 1.3 12 12 Yes Drosophila virilis 1.2 10 10 Yes Drosophila mojavensis 1.3 9 9 Yes Megaselia scalaris 22 14 14 Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 16 16 Yes Culex pipiens quinquefasciatus Southern house mosquito 14 14 Yes Anopheles darlingi 22 American malaria mosquito 10 7 Yes Anopheles gambiae 49_3j African malaria mosquito 16 16 Yes Tribolium castaneum 3.0 Red flour beetle 12 12 Yes Pediculus humanus corporis Human body louse 8 8 Yes Acyrthosiphon pisum Pea aphid 10 10 Yes Rhodnius prolixus 22 7 7 Yes Daphnia pulex Common water flea 10 10 Yes Strigamia maritima 22 51 49 Yes Sarcoptes scabiei 7 6 Yes Tetranychus urticae Two-spotted spider mite 9 7 Yes Ixodes scapularis Black-legged tick 12 12 Yes Pristionchus pacificus 4 4 Yes Meloidogyne incognita Southern root-knot nematode 2 2 Yes Meloidogyne hapla 1 1 Yes Onchocerca volvulus 22 2 2 Yes Brugia malayi WS250 Agent of lymphatic filariasis 6 6 Yes Caenorhabditis japonica 2 2 Yes Caenorhabditis brenneri 4 4 Yes Caenorhabditis remanei 2 2 Yes Caenorhabditis elegans 76_235 Roundworm 7 7 Yes Caenorhabditis briggsae 2 3 3 Yes Trichinella spiralis 22 1 1 Yes Hymenolepis microstoma 3 3 Yes Echinococcus multilocularis 4 4 Yes Echinococcus granulosus 4 4 Yes Taenia solium Pork tapeworm 4 4 Yes Schistosoma mansoni 8 8 Yes Mnemiopsis leidyi Sea walnut 19 16 Yes Acropora digitifera v1.0 46 44 Yes Nematostella vectensis 1.0 Starlet sea anemone 23 18 Yes Hydra vulgaris 7 7 Yes Amphimedon queenslandica 8 7 Yes Trichoplax adhaerens 20 15 Yes Proterospongia sp. ATCC 50818 65 65 Yes Monosiga brevicollis 9 9 Yes Capsaspora owczarzaki ATCC 30864 6 4 Yes Aspergillus niger 22 1 1 Yes Dictyostelium discoideum 2 2 Yes Dictyostelium purpureum 2 2 Yes Selaginella moellendorffii 1 1 Yes Pinus taeda Loblolly pine 498 449 Yes Picea abies Norway spruce 107 103 Yes Eucalyptus grandis v201 Rose gum 457 444 Yes Theobroma cacao B97-61/B2 v1 Cacao 32 32 Yes Gossypium raimondii v221 45 44 Yes Citrus clementina v165 116 116 Yes Citrus sinensis v154 Sweet orange 120 119 Yes Thellungiella halophila v173 105 104 Yes Brassica rapa Chiifu-401 1.2 Field mustard 170 163 Yes Capsella rubella v183 110 103 Yes Arabidopsis lyrata Lyrate rockcress 174 166 Yes Arabidopsis thaliana 10 Thale cress 182 173 Yes Carica papaya Papaya 13 13 Yes Medicago truncatula Barrel medic 561 506 Yes Phaseolus vulgaris v186 French bean 150 142 Yes Glycine max v109 Soybean 203 192 Yes Cucumis sativus v122 Cucumber 26 26 Yes Fragaria vesca Wild strawberry 190 177 Yes Malus domestica v196 Apple 452 433 Yes Prunus persica v139 Peach 173 173 Yes Linum usitatissimum v200 Flax 159 158 Yes Manihot esculenta v147 Cassava 46 46 Yes Populus trichocarpa v156 Black cottonwood 188 182 Yes Vitis vinifera Wine grape 34 34 Yes Mimulus guttatus v140 Spotted monkey flower 5 5 Yes Solanum lycopersicum v.2.3 Tomato 41 39 Yes Solanum tuberosum Potato 104 104 Yes Actinidia chinensis Hongyang 13 13 Yes Aquilegia coerulea v195 4 4 Yes Triticum urartu 22 2 2 Yes Triticum aestivum 22 Bread wheat 6 6 Yes Aegilops tauschii 22 2 2 Yes Brachypodium distachyon Stiff brome 4 4 Yes Oryza barthii 22 African wild rice 3 3 Yes Oryza meridionalis 22 4 4 Yes Oryza glumaepatula 22 3 3 Yes Oryza glaberrima African rice 4 4 Yes Oryza punctata 22 5 5 Yes Oryza nivara 22 4 4 Yes Oryza brachyantha 22 Malo sina 3 3 Yes Oryza sativa ssp. japonica 5.0 Japanese rice 5 5 Yes Oryza sativa v193 Rice 5 5 Yes Phyllostachys heterocycla var. pubescens Kikko-chiku 1 1 Yes Panicum virgatum v202 Switchgrass 6 6 Yes Setaria italica v164 Foxtail millet 5 5 Yes Zea mays subsp. mays Maize 4 4 Yes Zea mays v181 Maize 4 4 Yes Sorghum bicolor Sorghum 3 3 Yes Musa balbisiana Balbis banana 5 5 Yes Musa acuminata 22 Wild Malaysian banana 4 4 Yes Amborella trichopoda 22 30 29 Yes Physcomitrella patens 15 15 Yes Coccomyxa subellipsoidea sp. C-169 v2 1 1 Yes Chlorella vulgaris 1 1 Yes Volvox carteri f. nagariensis 7 7 Yes Volvox carteri v199 4 4 Yes Chlamydomonas reinhardtii 4.0 6 6 Yes Ostreococcus sp. RCC809 1 1 Yes Ostreococcus tauri 1 1 Yes Micromonas sp. RCC299 1 1 Yes Micromonas pusilla CCMP1545 v3.0 2 2 Yes Cyanidioschyzon merolae strain 10D 22 1 1 Yes Cyanidioschyzon merolae 1 1 Yes Porphyridium purpureum 02_2012 1 1 Yes Thecamonas trahens ATCC 50062 24 23 Yes Bigelowiella natans CCMP2755 22 3 3 Yes Cyanophora paradoxa 55 53 Yes Aureococcus anophagefferens 3 3 Yes Albugo laibachii 22 5 3 Yes Pythium iwayamai DAOM BR242034 22 9 6 Yes Pythium arrhenomanes ATCC 12531 22 8 6 Yes Pythium ultimum v1.7-2 20 14 Yes Pythium aphanidermatum DAOM BR444 22 15 9 Yes Pythium irregulare DAOM BR486 22 11 7 Yes Pythium vexans DAOM BR484 22 11 9 Yes Phytophthora ramorum 1.1 Sudden oak death agent 15 9 Yes Phytophthora sojae 1.1 15 10 Yes Phytophthora infestans T30-4 23 17 Yes Phytophthora capsici 8 7 Yes Hyaloperonospora arabidopsidis 22 8 4 Yes Perkinsus marinus ATCC 50983 2 2 Yes Symbiodinium minutum clade B1 v1.2 53 52 Yes Guillardia theta CCMP2712 v1.0 13 13 Yes Emiliania huxleyi CCMP1516 91 90 No Leptolyngbya sp. PCC 7376 19 5 No Pseudanabaena sp. PCC 7367 2 2 No Acaryochloris marina MBIC11017 10 10 No Synechocystis sp. PCC 6803 1 1 No Thermosynechococcus sp. NK55 1 1 No Thermosynechococcus elongatus BP-1 1 1 No Synechococcus sp. PCC 6312 1 1 No Microcoleus sp. PCC 7113 12 7 No Trichodesmium erythraeum IMS101 1 1 No Cyanothece sp. PCC 8802 8 8 No Halothece sp. PCC 7418 1 1 No Microcystis aeruginosa NIES-843 6 6 No Gloeobacter violaceus PCC 7421 1 1 No Rivularia sp. PCC 7116 1 1 No Calothrix sp. PCC 7507 7 7 No Anabaena variabilis ATCC 29413 5 3 No Nostoc punctiforme PCC 73102 11 11 No Nostoc sp. PCC 7120 5 3 No Anabaena sp. 90 6 4 No Conexibacter woesei DSM 14684 2 2 No Eggerthella lenta DSM 2243 1 1 No Slackia heliotrinireducens DSM 20476 1 1 No Modestobacter marinus 2 2 No Geodermatophilus obscurus DSM 43160 11 9 No Catenulispora acidiphila DSM 44928 7 7 No Frankia symbiont of Datisca glomerata 15 15 No Frankia sp. EAN1pec 22 22 No Frankia alni ACN14a 26 25 No Thermobifida fusca YX 1 1 No Thermomonospora curvata DSM 43183 1 1 No Streptosporangium roseum DSM 43021 7 7 No Kitasatospora setae KM-6054 4 4 No Streptomyces coelicolor A3(2) 8 8 No Streptomyces sp. PAMC26508 2 2 No Streptomyces flavogriseus ATCC 33331 2 2 No Streptomyces sp. SirexAA-E 3 3 No Streptomyces griseus subsp. griseus NBRC 13350 4 4 No Streptomyces violaceusniger Tu 4113 1 1 No Streptomyces avermitilis MA-4680 3 2 No Streptomyces scabiei 87.22 6 6 No Actinosynnema mirum DSM 43827 3 3 No Saccharopolyspora erythraea NRRL 2338 1 1 No Amycolatopsis mediterranei U32 1 1 No Nocardioides sp. JS614 1 1 No Microlunatus phosphovorus NM-1 3 3 No Salinispora arenicola CNS-205 2 2 No Micromonospora sp. L5 2 2 No Micromonospora aurantiaca ATCC 27029 1 1 No Actinoplanes sp. N902-109 1 1 No Actinoplanes sp. SE50/110 6 6 No Actinoplanes missouriensis 431 4 4 No Tsukamurella paurometabola DSM 20162 1 1 No Gordonia sp. KTR9 2 2 No Rhodococcus jostii RHA1 3 3 No Rhodococcus opacus B4 1 1 No Rhodococcus erythropolis PR4 1 1 No Mycobacterium gilvum PYR-GCK 1 1 No Xylanimonas cellulosilytica DSM 15894 1 1 No Arthrobacter phenanthrenivorans Sphe3 1 1 No Arthrobacter chlorophenolicus A6 1 1 No Arthrobacter sp. Rue61a 1 1 No Actinomyces sp. F0330 2 2 No Chloroflexus sp. Y-400-fl 1 1 No Chloroflexus aurantiacus J-10-fl 1 1 No Deinococcus gobiensis I-0 2 2 No Clostridium clariflavum DSM 19732 1 1 No Eubacterium siraeum 2 2 No Clostridium cellulolyticum H10 1 1 No Clostridium thermocellum ATCC 27405 2 2 No Ethanoligenens harbinense YUAN-3 1 1 No Ruminococcus sp. 1 1 No Ruminococcus bromii 1 1 No Desulfosporosinus acidiphilus SJ4 1 1 No Desulfosporosinus orientis DSM 765 1 1 No Syntrophobotulus glycolicus DSM 8271 1 1 No Desulfitobacterium hafniense Y51 2 2 No Desulfitobacterium dehalogenans ATCC 51507 1 1 No Desulfotomaculum ruminis DSM 2154 1 1 No Acetobacterium woodii DSM 1030 1 1 No Eubacterium eligens ATCC 27750 1 1 No Clostridium saccharolyticum WM1 2 2 No Clostridium lentocellum DSM 5427 1 1 No Eubacterium rectale M104/1 1 1 No Eubacterium rectale ATCC 33656 1 1 No Roseburia intestinalis 1 1 No Butyrivibrio proteoclasticus B316 1 1 No Syntrophomonas wolfei subsp. wolfei str. Goettingen 1 1 No Clostridium sp. BNL1100 1 1 No Clostridium novyi NT 1 1 No Clostridium beijerinckii NCIMB 8052 3 3 No Clostridium cellulovorans 743B 2 2 No Thermoanaerobacterium thermosaccharolyticum DSM 571 1 1 No Tepidanaerobacter acetatoxydans Re1 1 1 No Carnobacterium sp. 17-4 1 1 No Carnobacterium sp. WN1359 1 1 No Enterococcus faecalis 62 1 1 No Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 1 1 No Lactobacillus crispatus ST1 2 2 No Lactobacillus ruminis ATCC 27782 1 1 No Lactobacillus brevis ATCC 367 1 1 No Streptococcus pasteurianus ATCC 43144 1 1 No Streptococcus infantarius subsp. infantarius CJ18 1 1 No Streptococcus macedonicus ACA-DC 198 1 1 No Brevibacillus brevis NBRC 100599 1 1 No Paenibacillus terrae HPL-003 2 2 No Geobacillus thermoleovorans CCB_US3_UF5 1 1 No Bacillus sp. 1NLA3E 2 2 No Bacillus subtilis subsp. subtilis str. 168 1 1 No Bacillus pseudofirmus OF4 1 1 No Bacillus cellulosilyticus DSM 2522 1 1 No Macrococcus caseolyticus JCSC5402 1 1 No Gemmatimonas aurantiaca T-27 1 1 No Pelodictyon phaeoclathratiforme BU-1 13 13 No Chlorobium phaeobacteroides DSM 266 6 6 No Chlorobium limicola DSM 245 3 3 No Chlorobaculum parvum NCIB 8327 3 3 No Chlorobium tepidum TLS 2 2 No Chloroherpeton thalassium ATCC 35110 2 2 No Prosthecochloris aestuarii DSM 271 7 7 No Haliscomenobacter hydrossis DSM 1100 9 9 No Saprospira grandis str. Lewin 1 1 No Niastella koreensis GR20-10 7 7 No Chitinophaga pinensis DSM 2588 1 1 No Flexibacter litoralis DSM 6794 4 2 No Cyclobacterium marinum DSM 745 1 1 No Marivirga tractuosa DSM 4126 2 2 No Leadbetterella byssophila DSM 17132 1 1 No Cytophaga hutchinsonii ATCC 33406 1 1 No Spirosoma linguale DSM 74 4 4 No Odoribacter splanchnicus DSM 20712 5 5 No Bacteroides sp. CF50 1 1 No Prevotella denticola F0289 1 1 No Prevotella ruminicola 23 1 1 No Porphyromonas gingivalis ATCC 33277 1 1 No Bacteroides vulgatus ATCC 8482 1 1 No Bacteroides thetaiotaomicron VPI-5482 2 2 No Pedobacter saltans DSM 12145 1 1 No Sphingobacterium sp. 21 2 2 No Owenweeksia hongkongensis DSM 17368 1 1 No Robiginitalea biformata HTCC2501 1 1 No Aequorivita sublithincola DSM 14238 3 3 No Muricauda ruestringensis DSM 13258 1 1 No Capnocytophaga ochracea DSM 7271 1 1 No Planctomyces limnophilus DSM 3776 4 4 No Rhodopirellula baltica SH 1 4 4 No Opitutus terrae PB90-1 2 2 No Turneriella parva DSM 21527 2 2 No Spirochaeta smaragdinae DSM 11293 1 1 No Sphaerochaeta globus str. Buddy 1 1 No Treponema azotonutricium ZAS-9 6 3 No Treponema denticola ATCC 35405 2 2 No Candidatus Solibacter usitatus Ellin6076 4 4 No Granulicella tundricola MP5ACTX9 2 2 No Candidatus Koribacter versatilis Ellin345 2 2 No Terriglobus saanensis SP1PR4 1 1 No Acidobacterium capsulatum ATCC 51196 1 1 No Candidatus Nitrospira defluvii 1 1 No Sebaldella termitidis ATCC 33386 1 1 No Fusobacterium nucleatum subsp. nucleatum ATCC 25586 1 1 No Candidatus Methylomirabilis oxyfera 2 2 No Acidithiobacillus ferrooxidans ATCC 53993 1 1 No Helicobacter pylori B38 1 1 No Sulfurovum sp. NBC37-1 8 7 No Desulfarculus baarsii DSM 2075 1 1 No Syntrophus aciditrophicus SB 2 2 No Syntrophobacter fumaroxidans MPOB 1 1 No Desulfotalea psychrophila LSv54 1 1 No Desulfobulbus propionicus DSM 2032 2 2 No Desulfatibacillum alkenivorans AK-01 2 2 No Desulfobacterium autotrophicum HRM2 1 1 No Desulfococcus oleovorans Hxd3 2 2 No Geobacter daltonii FRC-32 3 3 No Geobacter uraniireducens Rf4 2 2 No Geobacter lovleyi SZ 3 3 No Geobacter metallireducens GS-15 3 3 No Pelobacter carbinolicus DSM 2380 2 2 No Haliangium ochraceum DSM 14365 3 3 No Sorangium cellulosum 'So ce 56' 10 10 No Anaeromyxobacter sp. Fw109-5 4 4 No Stigmatella aurantiaca DW4/3-1 3 3 No Dechloromonas aromatica RCB 4 4 No Thauera sp. MZ1T 5 5 No Azoarcus sp. KH32C 1 1 No Azoarcus sp. BH72 4 4 No Dechlorosoma suillum PS 2 2 No Candidatus Accumulibacter phosphatis clade IIA str. UW-1 9 9 No Rubrivivax gelatinosus IL144 2 2 No Leptothrix cholodnii SP-6 3 3 No Burkholderia xenovorans LB400 1 1 No Burkholderia sp. CCGE1002 2 2 No Burkholderia thailandensis E264 1 1 No Burkholderia gladioli BSR3 2 2 No Burkholderia glumae BGR1 1 1 No Alicycliphilus denitrificans K601 1 1 No Delftia sp. Cs1-4 1 1 No Polaromonas sp. JS666 2 2 No Rhodoferax ferrireducens T118 2 2 No Acidovorax ebreus TPSY 1 1 No Acidovorax sp. KKS102 1 1 No Acidovorax sp. JS42 2 2 No Acidovorax citrulli AAC00-1 1 1 No Herminiimonas arsenicoxydans 1 1 No Janthinobacterium sp. Marseille 1 1 No Advenella kashmirensis WT001 1 1 No Bordetella bronchiseptica RB50 1 1 No Nitrosospira multiformis ATCC 25196 1 1 No Nitrosomonas sp. Is79A3 8 8 No Gallionella capsiferriformans ES-2 5 5 No Brevundimonas subvibrioides ATCC 15264 1 1 No Caulobacter sp. K31 2 2 No Caulobacter crescentus NA1000 1 1 No Caulobacter segnis ATCC 21756 1 1 No Erythrobacter litoralis HTCC2594 1 1 No Sphingobium sp. SYK-6 2 2 No Sphingobium japonicum UT26S 2 2 No Sphingomonas sp. MM-1 1 1 No Sphingomonas wittichii RW1 2 2 No Zymomonas mobilis subsp. mobilis NCIMB 11163 1 1 No Maricaulis maris MCS10 1 1 No Hirschia baltica ATCC 49814 6 6 No Hyphomonas neptunium ATCC 15444 2 2 No Paracoccus denitrificans PD1222 1 1 No Rhodospirillum photometricum DSM 122 5 5 No Tistrella mobilis KA081020-065 4 4 No Magnetospirillum magneticum AMB-1 1 1 No Azospirillum lipoferum 4B 2 2 No Methylobacterium chloromethanicum CM4 6 6 No Methylobacterium extorquens AM1 1 1 No Methylobacterium populi BJ001 1 1 No Methylobacterium nodulans ORS 2060 2 2 No Parvibaculum lavamentivorans DS-1 1 1 No Brucella microti CCM 4915 1 1 No Brucella pinnipedialis B2/94 2 2 No Brucella canis ATCC 23365 1 1 No Brucella suis ATCC 23445 2 2 No Brucella melitensis ATCC 23457 2 2 No Brucella ovis ATCC 25840 2 2 No Brucella abortus S19 2 2 No Sinorhizobium fredii NGR234 2 2 No Sinorhizobium medicae WSM419 1 1 No Rhizobium etli CIAT 652 2 2 No Agrobacterium sp. H13-3 3 3 No Beijerinckia indica subsp. indica ATCC 9039 2 2 No Pelagibacterium halotolerans B2 2 2 No Rhodomicrobium vannielii ATCC 17100 4 4 No Hyphomicrobium sp. MC1 1 1 No Oligotropha carboxidovorans OM4 1 1 No Rhodopseudomonas palustris BisA53 1 1 No Nitrobacter winogradskyi Nb-255 1 1 No Nitrobacter hamburgensis X14 1 1 No Bradyrhizobium sp. ORS 278 2 2 No Saccharophagus degradans 2-40 1 1 No Haemophilus parasuis SH0165 1 1 No Actinobacillus pleuropneumoniae serovar 5b str. L20 1 1 No Vibrio sp. Ex25 1 1 No Vibrio parahaemolyticus RIMD 2210633 1 1 No Vibrio vulnificus MO6-24/O 1 1 No Photobacterium profundum SS9 1 1 No Shewanella piezotolerans WP3 1 1 No Shewanella sediminis HAW-EB3 1 1 No Shewanella denitrificans OS217 3 3 No Shewanella pealeana ATCC 700345 2 2 No Shewanella woodyi ATCC 51908 1 1 No Colwellia psychrerythraea 34H 2 2 No Marinobacter aquaeolei VT8 1 1 No Alteromonas sp. SN2 1 1 No Marinomonas mediterranea MMB-1 2 2 No Methylomonas methanica MC09 7 7 No Methylococcus capsulatus str. Bath 1 1 No Rhodanobacter denitrificans 2 2 No Xanthomonas axonopodis pv. citri str. 306 1 1 No Thiocystis violascens DSM 198 3 3 No Nitrosococcus halophilus Nc4 2 2 No Nitrosococcus oceani ATCC 19707 1 1 No Rahnella aquatilis CIP 78.65 = ATCC 33071 1 1 No Yersinia pseudotuberculosis IP 31758 2 2 No Yersinia pestis Pestoides F 1 1 No Dickeya zeae Ech1591 1 1 No Pectobacterium wasabiae WPP163 1 1 No Pectobacterium sp. SCC3193 1 1 No Pectobacterium carotovorum subsp. carotovorum PC1 1 1 No Erwinia billingiae Eb661 1 1 No Erwinia amylovora ATCC 49946 1 1 No Pseudomonas sp. UW4 1 1 No Pseudomonas fulva 12-X 1 1 No Pseudomonas sp. VLB120 1 1 No Psychrobacter sp. G 1 1 No Thiomicrospira crunogena XCL-2 2 2 No Methanocella paludicola SANAE 3 3 No Methanosaeta harundinacea 6Ac 2 2 No Methanosaeta thermophila PT 1 1 No Methanosaeta concilii GP6 2 2 No Methanosalsum zhilinae DSM 4017 1 1 No Methanococcoides burtonii DSM 6242 2 2 No Methanosarcina acetivorans C2A 1 1 No Methanosarcina mazei Go1 1 1 No Methanosarcina barkeri str. Fusaro 3 3 No Methanohalophilus mahii DSM 5219 1 1 No Methanoplanus petrolearius DSM 11571 1 1 No Methanoculleus bourgensis MS2 1 1 No Thermococcus gammatolerans EJ3 1 1 No Salinarchaeum sp. Harcht-Bsk1 1 1 No Halopiger xanaduensis SH-6 1 1 No Haloterrigena turkmenica DSM 5511 1 1 No Natrinema sp. J7-2 1 1 No Natrialba magadii ATCC 43099 2 2 No Halorhabdus utahensis DSM 12940 1 1 No Methanosphaera stadtmanae DSM 3091 1 1 No Methanobrevibacter ruminantium M1 3 3 Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 36 36 Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 16 16 Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 18 18 Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1 Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 6 6 Yes Theobroma cacao Matina 1-6 v0.9 Cacao 26 26 Yes Hordeum vulgare 22 Domesticated barley 3 3 Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 5 5 No Synechocystis sp. PCC 6803 substr. PCC-P 1 1 No Synechocystis sp. PCC 6803 substr. PCC-N 1 1 No Synechocystis sp. PCC 6803 substr. GT-I 1 1 No Synechocystis sp. PCC 6803 1 1 No Synechococcus sp. JA-2-3B'a(2-13) 1 1 No Synechococcus sp. JA-3-3Ab 1 1 No Crinalium epipsammum PCC 9333 1 1 No Oscillatoria nigro-viridis PCC 7112 1 1 No Cyanothece sp. PCC 7822 7 7 No Cyanothece sp. PCC 7425 3 3 No Cyanothece sp. PCC 7424 28 20 No Cyanothece sp. ATCC 51142 1 1 No Cyanothece sp. PCC 8801 9 9 No Gloeobacter kilaueensis Gloeobacter sp. JS 1 1 No Calothrix parietina Calothrix sp. PCC 6303 1 1 No Cylindrospermum stagnale PCC 7417 2 2 No Frankia sp. EuI1c 27 27 No Frankia sp. CcI3 10 10 No Nocardiopsis alba ATCC BAA-2165 1 1 No Streptomyces albus J1074 1 1 No Streptomyces fulvissimus DSM 40593 2 2 No Streptomyces venezuelae ATCC 10712 3 3 No Saccharothrix espanaensis DSM 44229 11 11 No Amycolatopsis mediterranei RB 1 1 No Amycolatopsis mediterranei S699 1 1 No Amycolatopsis mediterranei S699 1 1 No Amycolatopsis orientalis HCCB10007 1 1 No Propionibacterium acidipropionici ATCC 4875 1 1 No Actinoplanes friuliensis DSM 7358 4 4 No Nocardia brasiliensis ATCC 700358 2 2 No Mycobacterium sp. JDM601 1 1 No Mycobacterium sp. KMS 1 1 No Mycobacterium sp. MCS 1 1 No Mycobacterium gilvum Spyr1 1 1 No Mycobacterium kansasii ATCC 12478 1 1 No Actinomyces graevenitzii C83 1 1 No Actinomyces viscosus C505 1 1 No Deinococcus peraridilitoris DSM 19664 1 1 No Eubacterium siraeum V10Sc8a 1 1 No Clostridium thermocellum DSM 1313 1 1 No Ruminococcus champanellensis 18P13 2 2 No Desulfosporosinus meridiei DSM 13257 1 1 No Desulfitobacterium hafniense DCB-2 1 1 No Clostridium saccharolyticum Clostridium cf. saccharolyticum K10 1 1 No Coprococcus catus GD/7 2 2 No Roseburia intestinalis XB6B4 1 1 No Clostridium saccharoperbutylacetonicum N1-4(HMT) 1 1 No Enterococcus mundtii QU 25 1 1 No Enterococcus faecium DO 1 1 No Enterococcus faecalis str. Symbioflor 1 1 1 No Enterococcus faecalis D32 2 2 No Enterococcus faecalis V583 1 1 No Leuconostoc mesenteroides subsp. mesenteroides J18 1 1 No Lactobacillus plantarum ZJ316 1 1 No Lactobacillus brevis KB290 1 1 No Lactococcus lactis subsp. lactis KF147 1 1 No Streptococcus equi subsp. zooepidemicus ATCC 35246 1 1 No Streptococcus mutans GS-5 1 1 No Streptococcus mutans LJ23 1 1 No Streptococcus mutans UA159 1 1 No Streptococcus thermophilus JIM 8232 1 1 No Streptococcus suis TL13 1 1 No Paenibacillus sp. Y412MC10 1 1 No Bacillus amyloliquefaciens subsp. plantarum AS43.3 1 1 No Bacillus subtilis subsp. subtilis 6051-HGW 1 1 No Bacillus thuringiensis serovar finitimus YBT-020 1 1 No Bacillus cereus FRI-35 1 1 No Bacillus cereus AH820 1 1 No Bacillus cereus AH187 1 1 No Bacillus cereus G9842 1 1 No Bacillus cereus F837/76 1 1 No Bacillus cereus NC7401 1 1 No Bacillus cereus ATCC 14579 1 1 No Staphylococcus aureus subsp. aureus MSHR1132 2 2 No Staphylococcus pasteuri SP1 1 1 No Staphylococcus aureus 08BA02176 2 2 No Staphylococcus aureus subsp. aureus 71193 2 2 No Staphylococcus aureus subsp. aureus S0385 2 2 No Staphylococcus aureus subsp. aureus MSSA476 1 1 No Chlorobium phaeobacteroides BS1 1 1 No Emticicia oligotrophica DSM 17448 1 1 No Porphyromonas gingivalis TDC60 1 1 No Porphyromonas gingivalis W83 2 2 No Bacteroides xylanisolvens XB1A 2 2 No Nonlabens dokdonensis DSW-6 2 2 No Psychroflexus torquis ATCC 700755 2 2 No Fusobacterium nucleatum subsp. vincentii 3_1_36A2 1 1 No Arcobacter butzleri 7h1h 1 1 No Campylobacter jejuni Waterborne C.jejuni Outbreak 1 1 No Helicobacter pylori SouthAfrica20 1 1 No Helicobacter pylori UM298 1 1 No Helicobacter pylori UM299 1 1 No Helicobacter pylori UM032 1 1 No Helicobacter pylori Rif2 1 1 No Helicobacter pylori Rif1 1 1 No Helicobacter pylori HUP-B14 1 1 No Helicobacter pylori Shi112 1 1 No Helicobacter pylori Aklavik86 1 1 No Helicobacter pylori Puno120 1 1 No Helicobacter pylori ELS37 1 1 No Helicobacter pylori Gambia94/24 1 1 No Helicobacter pylori SouthAfrica7 1 1 No Helicobacter pylori India7 1 1 No Helicobacter pylori F30 1 1 No Helicobacter pylori Sat464 1 1 No Helicobacter pylori Cuz20 1 1 No Helicobacter pylori PeCan4 1 1 No Helicobacter pylori SJM180 1 1 No Helicobacter pylori G27 1 1 No Helicobacter pylori Shi470 1 1 No Helicobacter pylori 26695 1 1 No Helicobacter pylori 26695 1 1 No Desulfobacula toluolica Tol2 1 1 No Desulfovibrio gigas DSM 1382 = ATCC 19364 1 1 No Desulfovibrio desulfuricans ND132 1 1 No Geobacter sp. M18 2 2 No Geobacter sulfurreducens PCA 3 3 No Sorangium cellulosum So0157-2 12 12 No Myxococcus stipitatus DSM 14675 1 1 No Burkholderia phenoliruptrix BR3459a 1 1 No Ralstonia solanacearum FQY_4 1 1 No Ralstonia solanacearum GMI1000 1 1 No Burkholderia sp. YI23 1 1 No Burkholderia ambifaria MC40-6 1 1 No Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR 2 2 No Sulfuricella denitrificans skB26 1 1 No Caulobacter crescentus CB15 1 1 No Zymomonas mobilis subsp. mobilis ATCC 29191 1 1 No Zymomonas mobilis subsp. mobilis ATCC 10988 1 1 No Zymomonas mobilis subsp. mobilis ZM4 1 1 No Octadecabacter arcticus 238 1 1 No Rhodobacter sphaeroides ATCC 17025 1 1 No Rhodobacter sphaeroides 2.4.1 1 1 No Methylobacterium extorquens DM4 1 1 No Methylobacterium extorquens PA1 1 1 No Brucella ceti TE10759-12 2 2 No Brucella ceti TE28753-12 2 2 No Brucella canis HSK A52141 1 1 No Brucella suis VBI22 1 1 No Brucella suis 1330 1 1 No Brucella suis 1330 1 1 No Brucella melitensis NI 2 2 No Brucella melitensis M5-90 2 2 No Brucella melitensis M28 2 2 No Brucella melitensis bv. 1 str. 16M 2 2 No Brucella abortus A13334 2 2 No Brucella melitensis biovar Abortus 2308 2 2 No Brucella abortus bv. 1 str. 9-941 2 2 No Sinorhizobium fredii USDA 257 1 1 No Sinorhizobium fredii HH103 1 1 No Mesorhizobium australicum WSM2073 1 1 No Hyphomicrobium denitrificans 1NES1 2 2 No Oligotropha carboxidovorans OM5 1 1 No Oligotropha carboxidovorans OM5 1 1 No Rhodopseudomonas palustris DX-1 1 1 No Rhodopseudomonas palustris TIE-1 1 1 No Rhodopseudomonas palustris HaA2 1 1 No Rhodopseudomonas palustris BisB5 1 1 No Rhodopseudomonas palustris BisB18 2 2 No Rhodopseudomonas palustris CGA009 1 1 No Bradyrhizobium sp. BTAi1 4 4 No Bibersteinia trehalosi USDA-ARS-USMARC-192 1 1 No Aggregatibacter actinomycetemcomitans ANH9381 1 1 No Aggregatibacter actinomycetemcomitans D11S-1 1 1 No Pasteurella multocida subsp. multocida str. HN06 1 1 No Vibrio vulnificus CMCP6 1 1 No Vibrio vulnificus YJ016 1 1 No Shewanella baltica BA175 1 1 No Shewanella baltica OS223 3 3 No Shewanella sp. MR-7 1 1 No Shewanella putrefaciens 200 1 1 No Xanthomonas axonopodis pv. citrumelo F1 1 1 No Xanthomonas axonopodis Xac29-1 1 1 No Thioalkalivibrio nitratireducens DSM 14787 3 3 No Thioflavicoccus mobilis 8321 9 9 No Rahnella aquatilis HX2 1 1 No Yersinia pseudotuberculosis PB1/+ 1 1 No Yersinia pseudotuberculosis YPIII 2 2 No Yersinia pestis A1122 1 1 No Yersinia pestis Z176003 1 1 No Yersinia pestis D182038 1 1 No Yersinia pestis D106004 1 1 No Yersinia pestis biovar Medievalis str. Harbin 35 1 1 No Yersinia pestis Nepal516 1 1 No Yersinia pestis Antiqua 1 1 No Yersinia pestis CO92 1 1 No Yersinia pestis KIM10+ 1 1 No Yersinia enterocolitica subsp. palearctica 105.5R(r) 1 1 No Yersinia enterocolitica subsp. palearctica Y11 1 1 No Cronobacter sakazakii CMCC 45402 1 1 No Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 1 1 No Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 1 1 No Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 1 1 No Salmonella enterica subsp. enterica serovar Agona str. 24249 1 1 No Salmonella enterica subsp. enterica serovar Agona str. SL483 1 1 No Salmonella enterica subsp. enterica serovar Pullorum str. S06004 1 1 No Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67 1 1 No Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078 1 1 No Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 1 1 No Escherichia coli E. coli PMV-1 1 1 No Escherichia coli str. 'clone D i2' 1 1 No Escherichia coli str. 'clone D i14' 1 1 No Escherichia coli IAI39 1 1 No Escherichia coli 536 1 1 No Escherichia coli CFT073 1 1 No Pseudomonas denitrificans ATCC 13867 1 1 No Pseudomonas syringae pv. syringae B728a 1 1 No Pseudomonas stutzeri CCUG 29243 3 3 No Pseudomonas monteilii SB3101 1 1 No Pseudomonas monteilii SB3078 1 1 No Pseudomonas putida DOT-T1E 2 2 No Pseudomonas putida W619 2 2 No Pseudomonas fluorescens F113 1 1 No Pseudomonas fluorescens R124 1 1 No Pseudomonas aeruginosa PA7 1 1 No Acinetobacter baumannii BJAB0715 4 4 No Acinetobacter baumannii D1279779 1 1 No Acinetobacter junii SH205 1 1 No Acinetobacter johnsonii SH046 3 3 No Acinetobacter lwoffii SH145 3 3 No Methylophaga sp. JAM7 1 1 No Candidatus Nitrososphaera gargensis Ga9.2 1 1 No Methanolobus psychrophilus R15 1 1 No Methanosarcina mazei Tuc01 1 1 No Methanoregula formicica Methanoregula formicicum SMSP 1 1 No Thermococcus sp. CL1 1 1 No Halovivax ruber XH-70 1 1 No Natrinema pellirubrum DSM 15624 1 1 No Methanobacterium sp. SWAN-1 2 2 Yes Homo sapiens 75_37 (old version GRC) Human 78 78 Yes Homo sapiens Human 38 38 Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 26 26 Yes Heliconius numata 8 8 Yes Loa loa v3.3 (Request) Eye worm 2 2 Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 2 2 Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1 Yes Picea sitchensis Sitka spruce 2 2 Yes Lotus japonicus 172 172 Yes Malus x domestica (Duplicate) Apple 452 433 Yes Ricinus communis Castor bean 45 45 Yes Nicotiana benthamiana 0.4.4 (Early draft) 8 8 Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 39 37 Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 41 39 Yes Phoenix dactylifera Date palm 1 1 Yes Homo sapiens 69_37 Human 28 28 Yes Pan troglodytes 69_2.1.4 Chimpanzee 23 23 Yes Gorilla gorilla 69_3.1 Western gorilla 26 26 Yes Pongo abelii 69_2 Sumatran orangutan 21 21 Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 24 24 Yes Macaca mulatta 69_1 Rhesus monkey 25 25 Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 25 25 Yes Otolemur garnettii 69_3 Small-eared galago 23 23 Yes Microcebus murinus 69_1 Gray mouse lemur 18 18 Yes Rattus norvegicus 69_3.4 Norway rat 25 25 Yes Mus musculus 69_38 House mouse 26 26 Yes Dipodomys ordii 69_1 Ord's kangaroo rat 18 18 Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 26 26 Yes Cavia porcellus 69_3 Domestic guinea pig 27 27 Yes Oryctolagus cuniculus 69_2 Rabbit 23 23 Yes Ochotona princeps 69 American pika 17 17 Yes Tupaia belangeri 69 Northern tree shrew 15 15 Yes Sus scrofa 69_10.2 Pig 26 26 Yes Bos taurus 69_3.1 Cattle 21 21 Yes Vicugna pacos 69_1 Alpaca 18 18 Yes Tursiops truncatus 69_1 Bottlenose dolphin 19 19 Yes Mustela putorius furo 69_1.0 Domestic ferret 22 22 Yes Ailuropoda melanoleuca 69_1 Giant panda 26 26 Yes Canis familiaris 69_3.1 Dog 27 27 Yes Felis catus 69 Domestic cat 17 17 Yes Equus caballus 69_2 Horse 24 24 Yes Myotis lucifugus 69_2.0 Little brown bat 23 23 Yes Pteropus vampyrus 69_1 Large flying fox 21 21 Yes Sorex araneus 69_1 European shrew 17 17 Yes Erinaceus europaeus 69 Western European hedgehog 20 20 Yes Procavia capensis 69_1 Cape rock hyrax 17 16 Yes Loxodonta africana 69_3 African savanna elephant 25 25 Yes Echinops telfairi 69 Small Madagascar hedgehog 17 17 Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 13 13 Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 17 17 Yes Macropus eugenii 69_1.0 Tammar wallaby 20 20 Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 24 24 Yes Monodelphis domestica 69_5 Gray short-tailed opossum 20 20 Yes Ornithorhynchus anatinus 69_5 Platypus 20 20 Yes Petromyzon marinus 69_7.0 Sea lamprey 15 15 Yes Meleagris gallopavo 69_2 Turkey 23 23 Yes Gallus gallus 69_2 Chicken 26 26 Yes Taeniopygia guttata 69_3.2.4 Zebra finch 26 26 Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 26 26 Yes Anolis carolinensis 69_2.0 Green anole 26 26 Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 26 26 Yes Latimeria chalumnae 69_1 Coelacanth 29 29 Yes Gadus morhua 69_1 Atlantic cod 32 31 Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 21 21 Yes Takifugu rubripes 69_4 Torafugu 20 20 Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 20 20 Yes Oryzias latipes 69_1 Japanese medaka 18 18 Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 25 25 Yes Oreochromis niloticus 69_1.0 Nile tilapia 25 25 Yes Danio rerio 69_9 Zebrafish 35 35 Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 5 Yes Ciona intestinalis 69 Vase tunicate 13 13 Yes Drosophila melanogaster 69_5 Fruit fly 11 11 Yes Caenorhabditis elegans 69_215 Roundworm 2 2 Yes Arabidopsis thaliana 10 Thale cress 149 140 No 2_050719S (meta-genome) 2 2 No 2_Base_of_chrolophyll_max (meta-genome) 1 1 No 3_Below_base_of_euphotic (meta-genome) 1 1 No 4_050719Q (meta-genome) 4 4 No 4_Deep_abyss (meta-genome) 1 1 No 5_050719P (meta-genome) 3 3 No 5_Below_upper_mesopelagic (meta-genome) 1 1 No 6_Upper_euphotic (meta-genome) 1 1 No Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome) 3 3 No Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome) 6 6 No Air microbial communities Singapore indoor air filters 1 (meta-genome) 2 2 No Air microbial communities Singapore indoor air filters 2 (meta-genome) 6 6 No Atta cephalotes fungus garden (ACEF) (meta-genome) 2 2 No Combined (meta-genome) 7 7 No Cyphomyrmex longiscapus fungus garden (meta-genome) 11 11 No Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome) 1 1 No Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome) 2 2 No Dump bottom (Dump bottom) (meta-genome) 17 17 No Dump top (Dump top) (meta-genome) 9 9 No Endophytic microbiome from Rice (meta-genome) 3 3 No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome) 1 1 No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome) 2 2 No Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome) 1 1 No Freshwater propionate enrichment of Brocadia fulgida (meta-genome) 20 20 No Fungus garden combined (combined) (meta-genome) 4 4 No Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome) 6 6 No Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome) 11 11 No Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes 8 8 No Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome) 2 2 No Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome) 2 2 No Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome) 3 3 No Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome) 2 2 No Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome) 3 3 No Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome) 3 3 No Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome) 4 4 No Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome) 8 8 No Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome) 3 3 No Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome) 2 2 No Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome) 14 14 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome) 9 9 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome) 4 4 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome) 2 2 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome) 5 5 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome) 2 2 No Human Gut Community Subject 7 (meta-genome) 2 2 No Human Gut Community Subject 8 (meta-genome) 2 2 No Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome) 10 10 No Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome) 19 19 No Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome) 18 18 No Marine anammox bioreactor enriched for Scalindua species (meta-genome) 6 6 No Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) 94 94 No Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome) 30 30 No Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome) 4 4 No Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) 27 27 No Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome) 23 23 No Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome) 10 10 No Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome) 25 25 No Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome) 7 7 No Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome) 1 1 No Mouse Gut Community ob2 (meta-genome) 1 1 No NCBI 2017_08 genome 51774 50723 No Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) 27 27 No Olavius algarvensis endosymbiont metagenome Gamma1 (meta-genome) 2 2 No simHC - Simulated High Complexity Metagenome (meta-genome) 20 20 No simLC - Simulated Low Complexity Metagenome (meta-genome) 12 12 No simMC - Simulated Medium Complexity Metagenome (meta-genome) 18 18 No Sludge/Australian, Phrap Assembly (meta-genome) 34 34 No Sludge/US, Jazz Assembly (meta-genome) 14 14 No Sludge/US, Phrap Assembly (meta-genome) 29 29 No Soil microbial communities from Minnesota Farm (meta-genome) 79 79 No Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) 103 103 No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) 130 130 No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome) 50 50 No Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome) 64 64 No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) 91 91 No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome) 100 100 No Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome) 5 5 No STRING v9.0.5 (STRING) 2511 2413 No Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome) 11 11 No Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) 59 59 No Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome) 20 20 No Termite Protist Endosymbiont Community (meta-genome) 1 1 No Uniprot 2018_03 genome 31743 30843 No Uranium Contaminated Groundwater FW106 (meta-genome) 1 1 No Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome) 9 9 No Global Ocean Sampling Expedition (GOS) 121 121 No NCBI plasmid sequences (Plasmids) 79 76 No NCBI viral sequences (Viral) 2 2 No PDB chains (SCOP 1.75 ) (PDB) 4 4 No Protein Data Bank (all PDB sequenc) 89 89 No SCOP2 SCOPe CATH ECOD (all domain sequ) 137 137 No TargetDB 111 110 No The Salmonella enterica Pan-genome (meta-genome) 6 6 No UniProt 1 1
