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Serine-carboxyl proteinase, SCP family domain assignments
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PDB chains (SCOP 1.75)

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PDB chains (SCOP 1.75) (PDB) has 8 significant domains in 8 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1ga6A   2.93e-83   0.00000000000273   7-366   1ga6 A:  
1gt91   1.25e-82   0.00000000000457   3-356   1gt9 1:  
1kdvA   2.86e-83   0.00000000000273   7-366   1ga6 A:  
1sioA   1.1e-82   0.00000000000441   3-356   1sio A:  
1siuA   8.79e-82   0.0000000000046   3-356   1sio A:  
1t1eA   4.69e-79   0.00000000000469   191-544   1gt9 1:  
1t1gA   8.79e-82   0.00000000000481   3-356   1gt9 1:  
1t1iA   2.49e-81   0.00000000000519   3-356   1gt9 1:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   12281 12281
No Yes Homo sapiens 76_38 Human 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 1 1
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 1 1
No Yes Oryctolagus cuniculus 76_2 Rabbit 1 1
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 1 1
No Yes Canis familiaris 76_3.1 Dog 1 1
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Equus caballus 76_2 Horse 1 1
No Yes Myotis lucifugus 76_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 76_1 Large flying fox 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1 1
No Yes Xenopus laevis African clawed frog 2 2
No Yes Latimeria chalumnae 76_1 Coelacanth 1 1
No Yes Trichoplax adhaerens   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Coniophora puteana   2 2
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Galerina marginata v1.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Heterobasidion annosum   2 2
No Yes Postia placenta   2 2
No Yes Wolfiporia cocos MD-104 SS10 v1.0   1 1
No Yes Fomitopsis pinicolav1.0   5 5
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   5 5
No Yes Phanerochaete chrysosporium RP-78 2.1   2 2
No Yes Dichomitus squalens   6 6
No Yes Trametes versicolor v1.0   4 4
No Yes Apiospora montagnei NRRL 25634 v1.0   2 2
No Yes Magnaporthe grisea 70-15   1 1
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 2 2
No Yes Glomerella graminicola 22   2 2
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   2 2
No Yes Trichoderma atroviride   3 3
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 4 4
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   2 2
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Stagonospora nodorum   2 2
No Yes Mycosphaerella graminicola IPO323   3 3
No Yes Zasmidium cellare ATCC 36951 v1.0   6 6
No Yes Dothistroma septosporum   3 3
No Yes Septoria musiva v1.0   3 3
No Yes Mycosphaerella fijiensis CIRAD86   5 5
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   3 3
No Yes Microsporum canis CBS 113480   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   2 2
No Yes Penicillium chrysogenum v1.0   2 2
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus fumigatus Af293   2 2
No Yes Aspergillus brasiliensis v1.0   2 2
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus sydowii v1.0   2 2
No Yes Aspergillus versicolor v1.0   2 2
No Yes Aspergillus glaucus   1 1
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Neosartorya fischeri NRRL 181   2 2
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   2 2
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Penicillium marneffei ATCC 18224   2 2
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Chlorella vulgaris   1 1
No Yes Thecamonas trahens ATCC 50062   2 2
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Aureococcus anophagefferens   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Emiliania huxleyi CCMP1516   2 2
No Yes Acidimicrobium ferrooxidans DSM 10331   1 1
No Yes Acidothermus cellulolyticus 11B   3 3
No Yes Catenulispora acidiphila DSM 44928   3 3
No Yes Frankia alni ACN14a   2 2
No Yes Kitasatospora setae KM-6054   2 2
No Yes Amycolatopsis mediterranei U32   2 2
No Yes Segniliparus rotundus DSM 44985   2 2
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium chubuense NBB4   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Leifsonia xyli subsp. xyli str. CTCB07   1 1
No Yes Renibacterium salmoninarum ATCC 33209   1 1
No Yes Sulfobacillus acidophilus DSM 10332   2 2
No Yes Clostridium acetobutylicum ATCC 824   1 1
No Yes Lactobacillus buchneri NRRL B-30929   1 1
No Yes Lactobacillus buchneri   1 1
No Yes Lactobacillus brevis ATCC 367   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446   3 3
No Yes Spirosoma linguale DSM 74   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   3 3
No Yes Granulicella tundricola MP5ACTX9   4 4
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Candidatus Koribacter versatilis Ellin345   2 2
No Yes Terriglobus saanensis SP1PR4   2 2
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Acidobacterium capsulatum ATCC 51196   2 2
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Corallococcus coralloides DSM 2259   2 2
No Yes Chromobacterium violaceum ATCC 12472   3 3
No Yes Burkholderia rhizoxinica HKI 454   1 1
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia phymatum STM815   2 2
No Yes Burkholderia xenovorans LB400   1 1
No Yes Ralstonia eutropha JMP134   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia thailandensis E264   4 4
No Yes Burkholderia pseudomallei 1106a   4 4
No Yes Burkholderia mallei SAVP1   2 2
No Yes Burkholderia ambifaria AMMD   4 4
No Yes Burkholderia cenocepacia HI2424   3 3
No Yes Burkholderia multivorans ATCC 17616   2 2
No Yes Burkholderia vietnamiensis G4   2 2
No Yes Burkholderia gladioli BSR3   3 3
No Yes Burkholderia glumae BGR1   3 3
No Yes Collimonas fungivorans Ter331   2 2
No Yes Methylocella silvestris BL2   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Frateuria aurantia DSM 6220   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   2 2
No Yes Xanthomonas albilineans GPE PC73   3 3
No Yes Xanthomonas oryzae pv. oryzae PXO99A   1 1
No Yes Pectobacterium wasabiae WPP163   1 1
No Yes Pectobacterium sp. SCC3193   1 1
No Yes Pectobacterium atrosepticum SCRI1043   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PC1   1 1
No Yes Acidilobus saccharovorans 345-15   1 1
No Yes Metallosphaera cuprina Ar-4   3 3
No Yes Metallosphaera sedula DSM 5348   2 2
No Yes Acidianus hospitalis W1   2 2
No Yes Sulfolobus tokodaii str. 7   2 2
No Yes Sulfolobus islandicus Y.N.15.51   2 2
No Yes Sulfolobus solfataricus P2   2 2
No Yes Sulfolobus acidocaldarius DSM 639   2 2
No Yes Thermoplasma volcanium GSS1   1 1
No Yes Thermoplasma acidophilum DSM 1728   1 1
No Yes Picrophilus torridus DSM 9790   1 1
No Yes Aspergillus fumigatus A1163   3 3
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   5 5
No Yes Streptomyces collinus Tu 365   2 2
No Yes Amycolatopsis mediterranei RB   2 2
No Yes Amycolatopsis mediterranei S699   2 2
No Yes Amycolatopsis mediterranei S699   2 2
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Chthonomonas calidirosea T49   2 2
No Yes Sulfobacillus acidophilus TPY   2 2
No Yes Clostridium pasteurianum BC1   1 1
No Yes Clostridium acetobutylicum DSM 1731   1 1
No Yes Clostridium acetobutylicum EA 2018   1 1
No Yes Lactobacillus brevis KB290   1 1
No Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1   3 3
No Yes Sorangium cellulosum So0157-2   2 2
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Burkholderia sp. KJ006   3 3
No Yes Burkholderia thailandensis MSMB121   3 3
No Yes Burkholderia pseudomallei MSHR305   4 4
No Yes Burkholderia pseudomallei NCTC 13179   4 4
No Yes Burkholderia pseudomallei BPC006   4 4
No Yes Burkholderia pseudomallei 1026b   4 4
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   4 4
No Yes Burkholderia pseudomallei 1710b   4 4
No Yes Burkholderia pseudomallei K96243   4 4
No Yes Burkholderia mallei NCTC 10229   3 3
No Yes Burkholderia mallei NCTC 10247   3 3
No Yes Burkholderia mallei ATCC 23344   4 4
No Yes Burkholderia lata   4 4
No Yes Burkholderia ambifaria MC40-6   4 4
No Yes Burkholderia cenocepacia MC0-3   3 3
No Yes Burkholderia cenocepacia AU 1054   3 3
No Yes Burkholderia cenocepacia J2315   3 3
No Yes Burkholderia multivorans ATCC 17616   2 2
No Yes Burkholderia cepacia GG4   4 4
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   2 2
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   2 2
No Yes Xanthomonas axonopodis pv. citrumelo F1   2 2
No Yes Xanthomonas axonopodis Xac29-1   2 2
No Yes Xanthomonas oryzae pv. oryzicola BLS256   2 2
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   1 1
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   1 1
No Yes Caldisphaera lagunensis DSM 15908   1 1
No Yes Sulfolobus islandicus LAL14/1   2 2
No Yes Sulfolobus islandicus REY15A   2 2
No Yes Sulfolobus islandicus HVE10/4   2 2
No Yes Sulfolobus islandicus Y.G.57.14   2 2
No Yes Sulfolobus islandicus L.S.2.15   2 2
No Yes Sulfolobus islandicus M.16.27   2 2
No Yes Sulfolobus islandicus M.14.25   2 2
No Yes Sulfolobus islandicus M.16.4   2 2
No Yes Sulfolobus islandicus L.D.8.5   2 2
No Yes Sulfolobus solfataricus 98/2   2 2
No Yes Sulfolobus acidocaldarius SUSAZ   2 2
No Yes Sulfolobus acidocaldarius Ron12/I   2 2
No Yes Sulfolobus acidocaldarius N8   2 2
No Yes Ferroplasma acidarmanus fer1   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1 1
No Yes Rattus norvegicus 69_3.4 Norway rat 1 1
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 1 1
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Equus caballus 69_2 Horse 1 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 69_1 Large flying fox 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 1 1
No Yes Latimeria chalumnae 69_1 Coelacanth 1 1
No Yes 2_050719S (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   4 4
No Yes Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)   3 3
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   2 2
No Yes NCBI 2017_08 genome   8791 8791
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   8 8
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   7 7
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   3 3
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   5 5
No Yes STRING v9.0.5 (STRING)   163 163
No Yes Uniprot 2018_03 genome   2431 2431
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   4 4
No Yes Global Ocean Sampling Expedition (GOS)   12 12
No Yes NCBI plasmid sequences (Plasmids)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   8 8
No Yes Protein Data Bank (all PDB sequenc)   28 28
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   84 84
No Yes TargetDB (Targets)   5 5

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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