SUPERFAMILY 1.75 HMM library and genome assignments server

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Epoxide hydrolase family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   46876 46876
No Yes Homo sapiens 76_38 Human 9 9
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 76_3.1 Western gorilla 2 2
No Yes Pongo abelii 76_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 2 2
No Yes Papio anubis 76 Olive baboon 2 2
No Yes Macaca mulatta 76_1 Rhesus monkey 3 3
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 6 6
No Yes Otolemur garnettii 76_3 Small-eared galago 2 2
No Yes Microcebus murinus 76_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 2 2
No Yes Mus musculus 76_38 House mouse 5 5
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 2 2
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 2 2
No Yes Cavia porcellus 76_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 76_2 Rabbit 2 2
No Yes Ochotona princeps 76 American pika 2 2
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 2 2
No Yes Bos taurus 76_3.1 Cattle 2 2
No Yes Ovis aries 76_3.1 Sheep 2 2
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 76_1 Giant panda 2 2
No Yes Canis familiaris 76_3.1 Dog 3 3
No Yes Felis catus 76_6.2 Domestic cat 2 2
No Yes Equus caballus 76_2 Horse 2 2
No Yes Myotis lucifugus 76_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 76_1 Large flying fox 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 1 1
No Yes Procavia capensis 76_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 2 2
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 3 3
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 5 5
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 2 2
No Yes Ornithorhynchus anatinus 76_5 Platypus 2 2
No Yes Saccoglossus kowalevskii v3.0   2 2
No Yes Petromyzon marinus 76_7.0 Sea lamprey 2 2
No Yes Meleagris gallopavo 76_2 Turkey 4 4
No Yes Gallus gallus 76_4 Chicken 4 4
No Yes Anas platyrhynchos 76_1.0 Mallard 3 3
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 2 2
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 3 3
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 3 3
No Yes Anolis carolinensis 76_2.0 Green anole 3 3
No Yes Xenopus laevis African clawed frog 4 4
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 76_1 Coelacanth 1 1
No Yes Lepisosteus oculatus 76 Spotted gar 4 4
No Yes Gadus morhua 76_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 76_4 Torafugu 4 4
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 9 9
No Yes Oryzias latipes 76_1 Japanese medaka 4 4
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 3 3
No Yes Poecilia formosa 76 Amazon molly 2 2
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 3 3
No Yes Astyanax mexicanus 76 Mexican tetra 2 2
No Yes Danio rerio 76_9 Zebrafish 3 3
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 2 2
No Yes Ciona intestinalis 76 Vase tunicate 2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2 2
No Yes Adineta vaga   2 2
No Yes Capitella sp. I   1 1
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 2
No Yes Heliconius melpomene Postman butterfly 2 2
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Nasonia vitripennis Jewel wasp 2 2
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 2
No Yes Linepithema humile v1.1 Argentine ant 2 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 2
No Yes Solenopsis invicta v.2.2.3 Red fire ant 3 3
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 2
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Lucilia cuprina Australian sheep blowfly 4 1
No Yes Drosophila grimshawi 1.3   2 2
No Yes Drosophila willistoni 1.3   3 3
No Yes Drosophila pseudoobscura 2.13   3 3
No Yes Drosophila persimilis 1.3   2 2
No Yes Drosophila suzukii   2 2
No Yes Drosophila yakuba 1.3   2 2
No Yes Drosophila simulans 1.3   2 2
No Yes Drosophila sechellia 1.3   2 2
No Yes Drosophila melanogaster 76_5 Fruit fly 2 2
No Yes Drosophila erecta 1.3   2 2
No Yes Drosophila ananassae 1.3   3 3
No Yes Drosophila virilis 1.2   3 3
No Yes Drosophila mojavensis 1.3   2 2
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 3 3
No Yes Anopheles darlingi 22 American malaria mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 2 2
No Yes Tribolium castaneum 3.0 Red flour beetle 5 5
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Rhodnius prolixus 22   1 1
No Yes Daphnia pulex Common water flea 1 1
No Yes Strigamia maritima 22   3 3
No Yes Sarcoptes scabiei   1 1
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Pristionchus pacificus   1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis brenneri   2 2
No Yes Caenorhabditis remanei   1 1
No Yes Caenorhabditis elegans 76_235 Roundworm 1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   1 1
No Yes Acropora digitifera v1.0   2 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 2 2
No Yes Trichoplax adhaerens   7 7
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Monosiga brevicollis   1 1
No Yes Capsaspora owczarzaki ATCC 30864   1 1
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Phycomyces blakesleeanus   3 3
No Yes Rhizopus oryzae RA 99-880   2 2
No Yes Mucor circinelloides   3 3
No Yes Rhizomucor miehei CAU432   2 2
No Yes Sporisorium reilianum 22   3 3
No Yes Ustilago maydis   3 3
No Yes Mixia osmundae IAM 14324 v1.0   2 2
No Yes Rhodotorula graminis WP1 v1.0   2 2
No Yes Sporobolomyces roseus IAM 13481   2 2
No Yes Microbotryum violaceum 22   3 3
No Yes Sphaerobolus stellatus v1.0   13 13
No Yes Piloderma croceum F 1598 v1.0   3 3
No Yes Serpula lacrymans var. lacrymans S7.9   3 3
No Yes Coniophora puteana   7 7
No Yes Hydnomerulius pinastri v2.0   2 2
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   1 1
No Yes Coprinopsis cinerea okayama7 130 v3   4 4
No Yes Pleurotus ostreatus Oyster mushroom 4 4
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Galerina marginata v1.0   3 3
No Yes Hebeloma cylindrosporum h7 v2.0   5 5
No Yes Agaricus bisporus var. bisporus   5 5
No Yes Schizophyllum commune   6 6
No Yes Stereum hirsutum FP-91666 SS1 v1.0   5 5
No Yes Heterobasidion annosum   3 3
No Yes Gloeophyllum trabeumv1.0   5 5
No Yes Punctularia strigosozonata v1.0   7 7
No Yes Fomitiporia mediterranea v1.0   8 8
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Postia placenta   8 8
No Yes Wolfiporia cocos MD-104 SS10 v1.0   3 3
No Yes Fomitopsis pinicolav1.0   6 6
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   6 6
No Yes Phanerochaete chrysosporium RP-78 2.1   4 4
No Yes Dichomitus squalens   7 7
No Yes Trametes versicolor v1.0   11 11
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   4 4
No Yes Apiospora montagnei NRRL 25634 v1.0   6 6
No Yes Magnaporthe poae ATCC 64411 22   3 3
No Yes Magnaporthe grisea 70-15   6 6
No Yes Podospora anserina   4 4
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Chaetomium globosum CBS 148.51   3 3
No Yes Neurospora tetrasperma   2 2
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 3 3
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Glomerella graminicola 22   3 3
No Yes Fusarium graminearum   5 5
No Yes Nectria haematococca mpVI   10 10
No Yes Fusarium oxysporum f. sp. lycopersici 4286   7 7
No Yes Fusarium verticillioides 7600   4 4
No Yes Trichoderma asperellum CBS 433.97 v1.0   6 6
No Yes Trichoderma atroviride   11 11
No Yes Trichoderma citrinoviride v1.0   6 6
No Yes Trichoderma reesei 1.2   6 6
No Yes Trichoderma virens Gv29-8   13 13
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   5 5
No Yes Trichoderma harzianum CBS 226.95 v1.0   12 12
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 2
No Yes Botrytis cinerea B05.10   4 4
No Yes Sclerotinia sclerotiorum   2 2
No Yes Didymella exigua CBS 183.55 v1.0   4 4
No Yes Leptosphaeria maculans 22   4 4
No Yes Setosphaeria turcica v1.0   2 2
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   4 4
No Yes Cochliobolus victoriae FI3 v1.0   4 4
No Yes Cochliobolus carbonum 26-R-13 v1.0   3 3
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 2 2
No Yes Alternaria brassicicola   2 2
No Yes Cochliobolus lunatus m118 v2.0   6 6
No Yes Pyrenophora teres f. teres 22   4 4
No Yes Pyrenophora tritici-repentis   4 4
No Yes Stagonospora nodorum   5 5
No Yes Mycosphaerella graminicola IPO323   7 7
No Yes Zasmidium cellare ATCC 36951 v1.0   13 13
No Yes Dothistroma septosporum   9 9
No Yes Septoria musiva v1.0   5 5
No Yes Mycosphaerella fijiensis CIRAD86   6 6
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   3 3
No Yes Paracoccidioides brasiliensis Pb18   2 2
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Ajellomyces dermatitidis SLH14081   2 2
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Microsporum canis CBS 113480   2 2
No Yes Trichophyton equinum CBS 127.97   2 2
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Aspergillus zonatus v1.0   4 4
No Yes Penicillium chrysogenum Wisconsin 54-1255   3 3
No Yes Penicillium chrysogenum v1.0   3 3
No Yes Aspergillus acidus v1.0   3 3
No Yes Aspergillus fumigatus Af293   4 4
No Yes Aspergillus brasiliensis v1.0   5 5
No Yes Aspergillus nidulans FGSC A4   2 2
No Yes Aspergillus sydowii v1.0   8 8
No Yes Aspergillus versicolor v1.0   5 5
No Yes Aspergillus glaucus   3 3
No Yes Aspergillus carbonarius ITEM 5010   3 3
No Yes Neosartorya fischeri NRRL 181   5 5
No Yes Aspergillus terreus NIH2624   2 2
No Yes Aspergillus tubingensis v1.0   3 3
No Yes Aspergillus wentii v1.0   5 5
No Yes Aspergillus oryzae RIB40   6 6
No Yes Aspergillus niger 22   3 3
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   4 4
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Penicillium marneffei ATCC 18224   2 2
No Yes Tuber melanosporum Mel28 22   2 2
No Yes Tuber melanosporum Vittad Perigord truffle 2 2
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Catenaria anguillulae PL171 v1.0   2 2
No Yes Allomyces macrogynus ATCC 38327   2 2
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Selaginella moellendorffii   4 4
No Yes Picea abies Norway spruce 2 2
No Yes Eucalyptus grandis v201 Rose gum 14 14
No Yes Theobroma cacao B97-61/B2 v1 Cacao 5 5
No Yes Gossypium raimondii v221   14 14
No Yes Citrus clementina v165   12 12
No Yes Citrus sinensis v154 Sweet orange 5 5
No Yes Thellungiella halophila v173   4 4
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 7 7
No Yes Capsella rubella v183   5 5
No Yes Arabidopsis lyrata Lyrate rockcress 5 5
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes Carica papaya Papaya 3 3
No Yes Medicago truncatula Barrel medic 14 14
No Yes Phaseolus vulgaris v186 French bean 9 9
No Yes Glycine max v109 Soybean 15 15
No Yes Cucumis sativus v122 Cucumber 6 6
No Yes Fragaria vesca Wild strawberry 2 2
No Yes Malus domestica v196 Apple 8 8
No Yes Prunus persica v139 Peach 7 7
No Yes Linum usitatissimum v200 Flax 7 7
No Yes Manihot esculenta v147 Cassava 6 6
No Yes Populus trichocarpa v156 Black cottonwood 8 8
No Yes Vitis vinifera Wine grape 5 5
No Yes Mimulus guttatus v140 Spotted monkey flower 6 6
No Yes Solanum lycopersicum v.2.3 Tomato 7 7
No Yes Solanum tuberosum Potato 8 8
No Yes Actinidia chinensis Hongyang   6 6
No Yes Aquilegia coerulea v195   8 8
No Yes Triticum urartu 22   2 2
No Yes Triticum aestivum 22 Bread wheat 6 6
No Yes Aegilops tauschii 22   3 3
No Yes Brachypodium distachyon Stiff brome 7 7
No Yes Oryza barthii 22 African wild rice 6 5
No Yes Oryza meridionalis 22   4 4
No Yes Oryza glumaepatula 22   8 6
No Yes Oryza glaberrima African rice 6 6
No Yes Oryza punctata 22   9 6
No Yes Oryza nivara 22   3 3
No Yes Oryza brachyantha 22 Malo sina 4 4
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 6 6
No Yes Oryza sativa v193 Rice 6 6
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 5 5
No Yes Panicum virgatum v202 Switchgrass 6 6
No Yes Setaria italica v164 Foxtail millet 5 5
No Yes Zea mays subsp. mays Maize 4 4
No Yes Zea mays v181 Maize 5 5
No Yes Sorghum bicolor Sorghum 6 6
No Yes Musa balbisiana Balbis banana 5 5
No Yes Musa acuminata 22 Wild Malaysian banana 7 6
No Yes Amborella trichopoda 22   3 3
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   2 2
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella vulgaris   2 2
No Yes Pythium iwayamai DAOM BR242034 22   3 3
No Yes Pythium arrhenomanes ATCC 12531 22   2 2
No Yes Pythium ultimum v1.7-2   2 2
No Yes Pythium aphanidermatum DAOM BR444 22   4 4
No Yes Pythium irregulare DAOM BR486 22   2 2
No Yes Pythium vexans DAOM BR484 22   3 3
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 3 3
No Yes Phytophthora sojae 1.1   6 5
No Yes Phytophthora infestans T30-4   5 5
No Yes Phytophthora capsici   4 4
No Yes Symbiodinium minutum clade B1 v1.2   2 2
No Yes Naegleria gruberi   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Conexibacter woesei DSM 14684   2 2
No Yes Ilumatobacter coccineus   4 4
No Yes Nakamurella multipartita DSM 44233   2 2
No Yes Modestobacter marinus   2 2
No Yes Blastococcus saxobsidens DD2   1 1
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Kineococcus radiotolerans SRS30216   3 3
No Yes Catenulispora acidiphila DSM 44928   6 6
No Yes Stackebrandtia nassauensis DSM 44728   11 11
No Yes Frankia symbiont of Datisca glomerata   1 1
No Yes Frankia sp. EAN1pec   2 2
No Yes Frankia alni ACN14a   4 4
No Yes Thermobifida fusca YX   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   2 2
No Yes Thermomonospora curvata DSM 43183   2 2
No Yes Streptosporangium roseum DSM 43021   8 8
No Yes Kitasatospora setae KM-6054   1 1
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   2 2
No Yes Streptomyces flavogriseus ATCC 33331   2 2
No Yes Streptomyces sp. SirexAA-E   2 2
No Yes Streptomyces griseus subsp. griseus NBRC 13350   4 4
No Yes Streptomyces bingchenggensis BCW-1   3 3
No Yes Streptomyces violaceusniger Tu 4113   7 7
No Yes Streptomyces avermitilis MA-4680   3 3
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   5 5
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   5 5
No Yes Actinosynnema mirum DSM 43827   2 2
No Yes Pseudonocardia dioxanivorans CB1190   3 3
No Yes Saccharopolyspora erythraea NRRL 2338   2 2
No Yes Amycolatopsis mediterranei U32   14 14
No Yes Kribbella flavida DSM 17836   9 9
No Yes Salinispora arenicola CNS-205   2 2
No Yes Salinispora tropica CNB-440   2 2
No Yes Verrucosispora maris AB-18-032   3 3
No Yes Micromonospora sp. L5   3 3
No Yes Micromonospora aurantiaca ATCC 27029   2 2
No Yes Actinoplanes sp. N902-109   4 4
No Yes Actinoplanes sp. SE50/110   1 1
No Yes Actinoplanes missouriensis 431   3 3
No Yes Tsukamurella paurometabola DSM 20162   1 1
No Yes Gordonia polyisoprenivorans VH2   1 1
No Yes Gordonia bronchialis DSM 43247   1 1
No Yes Rhodococcus jostii RHA1   3 3
No Yes Rhodococcus equi 103S   2 2
No Yes Rhodococcus opacus B4   2 2
No Yes Rhodococcus erythropolis PR4   2 2
No Yes Nocardia cyriacigeorgica GUH-2   4 4
No Yes Amycolicicoccus subflavus DQS3-9A1   2 2
No Yes Mycobacterium massiliense str. GO 06   2 2
No Yes Mycobacterium abscessus ATCC 19977   2 2
No Yes Mycobacterium sp. JLS   4 4
No Yes Mycobacterium intracellulare ATCC 13950   2 2
No Yes Mycobacterium avium 104   2 2
No Yes Mycobacterium vanbaalenii PYR-1   4 4
No Yes Mycobacterium canettii CIPT 140010059   2 2
No Yes Mycobacterium africanum GM041182   1 1
No Yes Mycobacterium tuberculosis KZN 1435   2 2
No Yes Mycobacterium tuberculosis   2 2
No Yes Mycobacterium bovis BCG str. Pasteur 1173P2   1 1
No Yes Mycobacterium rhodesiae NBB3   5 5
No Yes Mycobacterium ulcerans Agy99   1 1
No Yes Mycobacterium gilvum PYR-GCK   4 4
No Yes Mycobacterium chubuense NBB4   2 2
No Yes Mycobacterium marinum M   3 3
No Yes Mycobacterium smegmatis str. MC2 155   5 5
No Yes Beutenbergia cavernae DSM 12333   3 3
No Yes Microbacterium testaceum StLB037   1 1
No Yes Clavibacter michiganensis subsp. michiganensis NCPPB 382   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes Cellulomonas flavigena DSM 20109   1 1
No Yes Cellulomonas fimi ATCC 484   3 3
No Yes Arthrobacter aurescens TC1   1 1
No Yes Rothia dentocariosa ATCC 17931   1 1
No Yes Renibacterium salmoninarum ATCC 33209   2 2
No Yes Thermomicrobium roseum DSM 5159   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Clostridium beijerinckii NCIMB 8052   2 2
No Yes Clostridium acetobutylicum ATCC 824   1 1
No Yes Paenibacillus sp. JDR-2   1 1
No Yes Paenibacillus terrae HPL-003   1 1
No Yes Paenibacillus mucilaginosus 3016   2 2
No Yes Bacillus clausii KSM-K16   1 1
No Yes Niastella koreensis GR20-10   2 2
No Yes Chitinophaga pinensis DSM 2588   3 3
No Yes Flexibacter litoralis DSM 6794   1 1
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Fibrella aestuarina   1 1
No Yes Fluviicola taffensis DSM 16823   1 1
No Yes Rhodopirellula baltica SH 1   1 1
No Yes Treponema brennaborense DSM 12168   1 1
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Terriglobus saanensis SP1PR4   1 1
No Yes Anaeromyxobacter sp. Fw109-5   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-1   1 1
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Corallococcus coralloides DSM 2259   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Myxococcus fulvus HW-1   2 2
No Yes Burkholderia phytofirmans PsJN   4 4
No Yes Burkholderia phymatum STM815   2 2
No Yes Burkholderia xenovorans LB400   2 2
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Ralstonia eutropha H16   3 3
No Yes Burkholderia sp. RPE64   2 2
No Yes Burkholderia sp. CCGE1002   2 2
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia cenocepacia HI2424   2 2
No Yes Burkholderia vietnamiensis G4   2 2
No Yes Burkholderia gladioli BSR3   3 3
No Yes Burkholderia glumae BGR1   1 1
No Yes Variovorax paradoxus S110   1 1
No Yes Janthinobacterium sp. Marseille   1 1
No Yes Achromobacter xylosoxidans A8   2 2
No Yes Achromobacter xylosoxidans   1 1
No Yes Caulobacter sp. K31   3 3
No Yes Caulobacter crescentus NA1000   2 2
No Yes Caulobacter segnis ATCC 21756   2 2
No Yes Phenylobacterium zucineum HLK1   3 3
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   1 1
No Yes Sphingobium japonicum UT26S   1 1
No Yes Sphingobium chlorophenolicum L-1   2 2
No Yes Sphingomonas sp. MM-1   2 2
No Yes Sphingomonas wittichii RW1   4 4
No Yes Maricaulis maris MCS10   1 1
No Yes Hyphomonas neptunium ATCC 15444   3 3
No Yes Jannaschia sp. CCS1   1 1
No Yes Ruegeria sp. TM1040   1 1
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Rhodospirillum centenum SW   1 1
No Yes Granulibacter bethesdensis CGDNIH1   1 1
No Yes Candidatus Puniceispirillum marinum IMCC1322   1 1
No Yes Starkeya novella DSM 506   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Methylobacterium chloromethanicum CM4   1 1
No Yes Methylobacterium extorquens AM1   1 1
No Yes Methylobacterium populi BJ001   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Parvibaculum lavamentivorans DS-1   3 3
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   3 3
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Rhizobium etli CIAT 652   2 2
No Yes Rhizobium leguminosarum bv. viciae 3841   5 5
No Yes Agrobacterium tumefaciens str. C58   2 2
No Yes Mesorhizobium opportunistum WSM2075   3 3
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Mesorhizobium loti MAFF303099   1 1
No Yes Pelagibacterium halotolerans B2   1 1
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Bradyrhizobium japonicum USDA 110   6 6
No Yes Bradyrhizobium sp. ORS 278   2 2
No Yes Alcanivorax borkumensis SK2   1 1
No Yes gamma proteobacterium HdN1   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Pantoea sp. At-9b   1 1
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   2 2
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas mendocina ymp   1 1
No Yes Methanoculleus marisnigri JR1   1 1
No Yes Haloterrigena turkmenica DSM 5511   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 4 4
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 2 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 2
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   2 2
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Ajellomyces dermatitidis ER-3   2 2
No Yes Histoplasma capsulatum H143   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Aspergillus fumigatus A1163   4 4
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 6 6
No Yes Hordeum vulgare 22 Domesticated barley 3 3
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 4 4
No Yes Frankia sp. EuI1c   4 4
No Yes Frankia sp. CcI3   2 2
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces albus J1074   2 2
No Yes Streptomyces rapamycinicus NRRL 5491   7 7
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces fulvissimus DSM 40593   2 2
No Yes Streptomyces collinus Tu 365   2 2
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   5 5
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   5 5
No Yes Saccharothrix espanaensis DSM 44229   7 7
No Yes Amycolatopsis mediterranei RB   14 14
No Yes Amycolatopsis mediterranei S699   14 14
No Yes Amycolatopsis mediterranei S699   14 14
No Yes Amycolatopsis orientalis HCCB10007   10 10
No Yes Actinoplanes friuliensis DSM 7358   11 11
No Yes Rhodococcus erythropolis CCM2595   2 2
No Yes Nocardia brasiliensis ATCC 700358   11 11
No Yes Mycobacterium sp. MOTT36Y   1 1
No Yes Mycobacterium sp. JDM601   2 2
No Yes Mycobacterium abscessus subsp. bolletii 50594   2 2
No Yes Mycobacterium liflandii 128FXT   2 2
No Yes Mycobacterium sp. KMS   4 4
No Yes Mycobacterium sp. MCS   3 3
No Yes Mycobacterium yongonense 05-1390   2 2
No Yes Mycobacterium intracellulare MOTT-64   2 2
No Yes Mycobacterium indicus pranii MTCC 9506   2 2
No Yes Mycobacterium intracellulare MOTT-02   3 3
No Yes Mycobacterium avium subsp. paratuberculosis MAP4   2 2
No Yes Mycobacterium avium subsp. paratuberculosis K-10   2 2
No Yes Mycobacterium canettii CIPT 140070017   2 2
No Yes Mycobacterium canettii CIPT 140060008   2 2
No Yes Mycobacterium canettii CIPT 140070008   2 2
No Yes Mycobacterium canettii CIPT 140070010   2 2
No Yes Mycobacterium tuberculosis EAI5/NITR206   2 2
No Yes Mycobacterium tuberculosis EAI5   2 2
No Yes Mycobacterium tuberculosis str. Beijing/NITR203   2 2
No Yes Mycobacterium tuberculosis UT205   2 2
No Yes Mycobacterium tuberculosis RGTB423   2 2
No Yes Mycobacterium tuberculosis RGTB327   1 1
No Yes Mycobacterium tuberculosis CTRI-2   2 2
No Yes Mycobacterium tuberculosis str. Erdman = ATCC 35801   2 2
No Yes Mycobacterium tuberculosis KZN 605   2 2
No Yes Mycobacterium tuberculosis KZN 4207   2 2
No Yes Mycobacterium tuberculosis CCDC5180   2 2
No Yes Mycobacterium tuberculosis CCDC5079   2 2
No Yes Mycobacterium tuberculosis CCDC5079   2 2
No Yes Mycobacterium tuberculosis H37Ra   2 2
No Yes Mycobacterium tuberculosis str. Haarlem   2 2
No Yes Mycobacterium tuberculosis F11   2 2
No Yes Mycobacterium tuberculosis H37Rv   2 2
No Yes Mycobacterium tuberculosis CDC1551   2 2
No Yes Mycobacterium bovis AF2122/97   1 1
No Yes Mycobacterium bovis BCG str. Korea 1168P   1 1
No Yes Mycobacterium bovis BCG str. Mexico   1 1
No Yes Mycobacterium bovis BCG str. Tokyo 172   1 1
No Yes Mycobacterium gilvum Spyr1   4 4
No Yes Mycobacterium smegmatis str. MC2 155   5 5
No Yes Mycobacterium kansasii ATCC 12478   2 2
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Clostridium pasteurianum BC1   2 2
No Yes Clostridium acetobutylicum DSM 1731   1 1
No Yes Clostridium acetobutylicum EA 2018   1 1
No Yes Carnobacterium maltaromaticum LMA28   1 1
No Yes Paenibacillus sp. Y412MC10   2 2
No Yes Paenibacillus mucilaginosus KNP414   2 2
No Yes Paenibacillus mucilaginosus K02   2 2
No Yes Paenibacillus polymyxa CR1   1 1
No Yes Sorangium cellulosum So0157-2   3 3
No Yes Myxococcus stipitatus DSM 14675   2 2
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Burkholderia sp. YI23   2 2
No Yes Burkholderia sp. CCGE1003   2 2
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Burkholderia sp. KJ006   2 2
No Yes Burkholderia lata   3 3
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia MC0-3   2 2
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   2 2
No Yes Burkholderia cepacia GG4   1 1
No Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061   1 1
No Yes Caulobacter crescentus CB15   2 2
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Paracoccus aminophilus JCM 7686   1 1
No Yes Candidatus Pelagibacter ubique HTCC1062   1 1
No Yes Methylobacterium extorquens DM4   1 1
No Yes Methylobacterium extorquens PA1   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti GR4   3 3
No Yes Sinorhizobium meliloti Rm41   2 2
No Yes Sinorhizobium meliloti SM11   2 2
No Yes Sinorhizobium meliloti BL225C   2 2
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium tropici CIAT 899   3 3
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   3 3
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   6 6
No Yes Rhodopseudomonas palustris DX-1   2 2
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB5   2 2
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   4 4
No Yes Bradyrhizobium sp. BTAi1   2 2
No Yes Bradyrhizobium oligotrophicum S58   3 3
No Yes Bradyrhizobium japonicum USDA 6   4 4
No Yes Alcanivorax dieselolei B5   2 2
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Serratia marcescens FGI94   1 1
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Pseudomonas stutzeri RCH2   1 1
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas fluorescens Pf0-1   2 2
No Yes Pseudomonas resinovorans NBRC 106553   2 2
No Yes Pseudomonas mendocina NK-01   1 1
No Yes Natrinema pellirubrum DSM 15624   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 8 8
No Yes Homo sapiens (NCBI version) Human 3 3
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 3 3
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Moniliophthora perniciosa FA553 (Genome survey)   2 2
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   4 4
No Yes Malus x domestica (Duplicate) Apple 8 8
No Yes Ricinus communis (Early assembly) Castor bean 6 6
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   5 5
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 7 7
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 7 7
No Yes Mycobacterium tuberculosis H37Rv (Duplicate of ex)   2 2
No Yes Homo sapiens 69_37 Human 2 2
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 2 2
No Yes Gorilla gorilla 69_3.1 Western gorilla 2 2
No Yes Pongo abelii 69_2 Sumatran orangutan 2 2
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 2 2
No Yes Macaca mulatta 69_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 2 2
No Yes Otolemur garnettii 69_3 Small-eared galago 2 2
No Yes Microcebus murinus 69_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 69_3.4 Norway rat 3 3
No Yes Mus musculus 69_38 House mouse 3 3
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 2 2
No Yes Cavia porcellus 69_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 69_2 Rabbit 2 2
No Yes Ochotona princeps 69 American pika 2 2
No Yes Tupaia belangeri 69 Northern tree shrew 1 1
No Yes Sus scrofa 69_10.2 Pig 2 2
No Yes Bos taurus 69_3.1 Cattle 2 2
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 2 2
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 69_1 Giant panda 2 2
No Yes Canis familiaris 69_3.1 Dog 2 2
No Yes Felis catus 69 Domestic cat 2 2
No Yes Equus caballus 69_2 Horse 2 2
No Yes Myotis lucifugus 69_2.0 Little brown bat 2 2
No Yes Pteropus vampyrus 69_1 Large flying fox 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 1 1
No Yes Procavia capensis 69_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 2 2
No Yes Echinops telfairi 69 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 3 3
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 2 2
No Yes Ornithorhynchus anatinus 69_5 Platypus 2 2
No Yes Petromyzon marinus 69_7.0 Sea lamprey 2 2
No Yes Meleagris gallopavo 69_2 Turkey 3 3
No Yes Gallus gallus 69_2 Chicken 4 4
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 2 2
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 3 3
No Yes Anolis carolinensis 69_2.0 Green anole 3 3
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 69_1 Coelacanth 1 1
No Yes Gadus morhua 69_1 Atlantic cod 2 2
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 2 2
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 4 4
No Yes Oryzias latipes 69_1 Japanese medaka 2 2
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 3 3
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 3 3
No Yes Danio rerio 69_9 Zebrafish 3 3
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 2 2
No Yes Drosophila melanogaster 69_5 Fruit fly 2 2
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes Arabidopsis thaliana 10 Thale cress 5 5
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 2_Base_of_chrolophyll_max (meta-genome)   1 1
No Yes 6_Upper_euphotic (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   2 2
No Yes Combined (meta-genome)   5 5
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   1 1
No Yes Dump top (Dump top) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   3 3
No Yes NCBI 2017_08 genome   30142 30133
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   5 5
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   4 4
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   487 486
No Yes Uniprot 2018_03 genome   12066 12038
No Yes Global Ocean Sampling Expedition (GOS)   409 409
No Yes NCBI plasmid sequences (Plasmids)   53 53
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   132 132
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   338 338
No Yes TargetDB (Targets)   7 7

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