SUPERFAMILY 1.75 HMM library and genome assignments server

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Haloperoxidase family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   39088 39088
No Yes Caenorhabditis japonica   1 1
No Yes Cochliobolus lunatus m118 v2.0   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Hansenula polymorpha v2.0   1 1
No Yes Candida guilliermondii ATCC 6260   1 1
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   1 1
No Yes Debaromyces hansenii   1 1
No Yes Wickerhamomyces anomalus   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Trypanosoma congolense 2.4   1 1
No Yes Phytophthora capsici   2 2
No Yes Synechocystis sp. PCC 6803   2 2
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Anabaena variabilis ATCC 29413   3 3
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nakamurella multipartita DSM 44233   1 1
No Yes Modestobacter marinus   1 1
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Kineococcus radiotolerans SRS30216   3 3
No Yes Catenulispora acidiphila DSM 44928   3 3
No Yes Frankia symbiont of Datisca glomerata   1 1
No Yes Frankia sp. EAN1pec   2 2
No Yes Frankia alni ACN14a   1 1
No Yes Thermobifida fusca YX   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Thermomonospora curvata DSM 43183   1 1
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Kitasatospora setae KM-6054   2 2
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces violaceusniger Tu 4113   1 1
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces scabiei 87.22   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   7 7
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Propionibacterium propionicum F0230a   1 1
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Salinispora arenicola CNS-205   2 2
No Yes Salinispora tropica CNB-440   4 4
No Yes Verrucosispora maris AB-18-032   1 1
No Yes Micromonospora sp. L5   1 1
No Yes Micromonospora aurantiaca ATCC 27029   1 1
No Yes Actinoplanes sp. N902-109   5 5
No Yes Actinoplanes missouriensis 431   4 4
No Yes Gordonia sp. KTR9   2 2
No Yes Rhodococcus jostii RHA1   1 1
No Yes Rhodococcus opacus B4   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Mycobacterium sp. JLS   1 1
No Yes Mycobacterium avium 104   1 1
No Yes Mycobacterium vanbaalenii PYR-1   1 1
No Yes Mycobacterium rhodesiae NBB3   1 1
No Yes Mycobacterium gilvum PYR-GCK   2 2
No Yes Mycobacterium chubuense NBB4   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Sanguibacter keddieii DSM 10542   1 1
No Yes Microbacterium testaceum StLB037   2 2
No Yes Clavibacter michiganensis subsp. michiganensis NCPPB 382   1 1
No Yes Jonesia denitrificans DSM 20603   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   2 2
No Yes Cellulomonas fimi ATCC 484   2 2
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter chlorophenolicus A6   2 2
No Yes Arthrobacter aurescens TC1   2 2
No Yes Arthrobacter arilaitensis Re117   1 1
No Yes Arthrobacter sp. Rue61a   2 2
No Yes Arthrobacter sp. FB24   1 1
No Yes Micrococcus luteus NCTC 2665   1 1
No Yes Deinococcus gobiensis I-0   1 1
No Yes Deinococcus deserti VCD115   1 1
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Clostridium saccharolyticum WM1   1 1
No Yes Clostridium phytofermentans ISDg   1 1
No Yes Alkaliphilus oremlandii OhILAs   1 1
No Yes Clostridium ljungdahlii DSM 13528   1 1
No Yes Clostridium beijerinckii NCIMB 8052   1 1
No Yes Clostridium tetani E88   1 1
No Yes Exiguobacterium sp. MH3   1 1
No Yes Exiguobacterium sp. AT1b   1 1
No Yes Exiguobacterium sibiricum 255-15   1 1
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus sp. JDR-2   2 2
No Yes Paenibacillus terrae HPL-003   1 1
No Yes Paenibacillus mucilaginosus 3016   2 2
No Yes Paenibacillus polymyxa M1   1 1
No Yes Halobacillus halophilus DSM 2266   1 1
No Yes Bacillus atrophaeus 1942   2 2
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   2 2
No Yes Bacillus megaterium DSM 319   2 2
No Yes Gemmatimonas aurantiaca T-27   1 1
No Yes Niastella koreensis GR20-10   1 1
No Yes Fibrella aestuarina   2 2
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Spirosoma linguale DSM 74   2 2
No Yes Runella slithyformis DSM 19594   1 1
No Yes Sphingobacterium sp. 21   2 2
No Yes Zunongwangia profunda SM-A87   1 1
No Yes Gramella forsetii KT0803   1 1
No Yes Lacinutrix sp. 5H-3-7-4   1 1
No Yes Robiginitalea biformata HTCC2501   1 1
No Yes Croceibacter atlanticus HTCC2559   1 1
No Yes Zobellia galactanivorans   1 1
No Yes Weeksella virosa DSM 16922   1 1
No Yes Flavobacterium johnsoniae UW101   2 2
No Yes Rhodopirellula baltica SH 1   1 1
No Yes Pirellula staleyi DSM 6068   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Granulicella tundricola MP5ACTX9   1 1
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Candidatus Koribacter versatilis Ellin345   3 3
No Yes Terriglobus saanensis SP1PR4   3 3
No Yes Terriglobus roseus DSM 18391   2 2
No Yes Desulfomicrobium baculatum DSM 4028   1 1
No Yes Desulfovibrio magneticus RS-1   1 1
No Yes Geobacter daltonii FRC-32   1 1
No Yes Geobacter sp. M21   1 1
No Yes Geobacter uraniireducens Rf4   1 1
No Yes Geobacter bemidjiensis Bem   1 1
No Yes Babela massiliensis   1 1
No Yes Anaeromyxobacter sp. Fw109-5   1 1
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Burkholderia phytofirmans PsJN   4 4
No Yes Burkholderia phymatum STM815   2 2
No Yes Burkholderia xenovorans LB400   2 2
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus taiwanensis LMG 19424   3 3
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Cupriavidus necator N-1   3 3
No Yes Ralstonia eutropha H16   4 4
No Yes Burkholderia sp. RPE64   3 3
No Yes Burkholderia sp. CCGE1002   6 6
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia ambifaria AMMD   4 4
No Yes Burkholderia cenocepacia HI2424   6 6
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   4 4
No Yes Burkholderia gladioli BSR3   2 2
No Yes Burkholderia glumae BGR1   1 1
No Yes Ramlibacter tataouinensis TTB310   1 1
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Variovorax paradoxus S110   2 2
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Pusillimonas sp. T7-7   1 1
No Yes Advenella kashmirensis WT001   1 1
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Asticcacaulis excentricus CB 48   2 2
No Yes Brevundimonas subvibrioides ATCC 15264   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Caulobacter segnis ATCC 21756   4 4
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Novosphingobium sp. PP1Y   3 3
No Yes Sphingobium sp. SYK-6   2 2
No Yes Sphingobium japonicum UT26S   1 1
No Yes Sphingomonas sp. MM-1   1 1
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Ketogulonicigenium vulgare Y25   1 1
No Yes Ketogulonigenium vulgarum WSH-001   1 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Azospirillum lipoferum 4B   2 2
No Yes Azospirillum sp. B510   2 2
No Yes Azospirillum brasilense Sp245   2 2
No Yes Granulibacter bethesdensis CGDNIH1   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   2 2
No Yes Gluconobacter oxydans 621H   2 2
No Yes Starkeya novella DSM 506   4 4
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Azorhizobium caulinodans ORS 571   3 3
No Yes Methylobacterium chloromethanicum CM4   2 2
No Yes Methylobacterium extorquens AM1   2 2
No Yes Methylobacterium populi BJ001   1 1
No Yes Methylobacterium radiotolerans JCM 2831   2 2
No Yes Parvibaculum lavamentivorans DS-1   3 3
No Yes Sinorhizobium fredii NGR234   3 3
No Yes Sinorhizobium medicae WSM419   3 3
No Yes Sinorhizobium meliloti AK83   5 5
No Yes Genome sequence of Rhizobium sp. strain IRBG74   4 4
No Yes Rhizobium etli CIAT 652   2 2
No Yes Rhizobium leguminosarum bv. viciae 3841   3 3
No Yes Agrobacterium tumefaciens str. C58   5 5
No Yes Agrobacterium radiobacter K84   1 1
No Yes Agrobacterium sp. H13-3   4 4
No Yes Agrobacterium vitis S4   2 2
No Yes Mesorhizobium opportunistum WSM2075   2 2
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Mesorhizobium loti MAFF303099   3 3
No Yes Methylocella silvestris BL2   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Hyphomicrobium sp. MC1   2 2
No Yes Oligotropha carboxidovorans OM4   1 1
No Yes Rhodopseudomonas palustris BisA53   2 2
No Yes Bradyrhizobium japonicum USDA 110   3 3
No Yes Bradyrhizobium sp. ORS 278   4 4
No Yes Vibrio furnissii NCTC 11218   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Chromohalobacter salexigens DSM 3043   1 1
No Yes Methylomicrobium alcaliphilum   1 1
No Yes Frateuria aurantia DSM 6220   1 1
No Yes Pseudoxanthomonas spadix BD-a59   1 1
No Yes Pseudoxanthomonas suwonensis 11-1   1 1
No Yes Stenotrophomonas maltophilia K279a   3 3
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Legionella longbeachae NSW150   1 1
No Yes Rahnella sp. Y9602   2 2
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   3 3
No Yes Serratia sp. AS12   1 1
No Yes Serratia plymuthica AS9   1 1
No Yes Pantoea sp. At-9b   4 4
No Yes Pantoea vagans C9-1   1 1
No Yes Pantoea ananatis LMG 20103   1 1
No Yes Erwinia sp. Ejp617   1 1
No Yes Erwinia billingiae Eb661   2 2
No Yes Erwinia pyrifoliae Ep1/96   1 1
No Yes Erwinia amylovora ATCC 49946   1 1
No Yes Escherichia blattae DSM 4481   1 1
No Yes Cronobacter turicensis z3032   1 1
No Yes Enterobacteriaceae bacterium strain FGI 57   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Klebsiella pneumoniae NTUH-K2044   1 1
No Yes Enterobacter aerogenes KCTC 2190   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Enterobacter sp. 638   1 1
No Yes Enterobacter asburiae LF7a   1 1
No Yes Enterobacter cloacae subsp. dissolvens SDM   2 2
No Yes Citrobacter rodentium ICC168   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   2 2
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   2 2
No Yes Pseudomonas entomophila L48   2 2
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas stutzeri A1501   1 1
No Yes Pseudomonas fulva 12-X   2 2
No Yes Pseudomonas putida F1   2 2
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Pseudomonas sp. VLB120   2 2
No Yes Psychrobacter sp. G   1 1
No Yes Psychrobacter cryohalolentis K5   1 1
No Yes Acinetobacter oleivorans DR1   1 1
No Yes Acinetobacter calcoaceticus PHEA-2   1 1
No Yes Acinetobacter baumannii ATCC 17978   1 1
No Yes Acinetobacter sp. ADP1   1 1
No Yes Methanosarcina acetivorans C2A   1 1
No Yes Methanosphaerula palustris E1-9c   1 1
No Yes Methanoculleus marisnigri JR1   1 1
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Halalkalicoccus jeotgali B3   1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Chroococcidiopsis thermalis PCC 7203   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   2 2
No Yes Oscillatoria nigro-viridis PCC 7112   2 2
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces davawensis JCM 4913   5 5
No Yes Streptomyces fulvissimus DSM 40593   2 2
No Yes Streptomyces venezuelae ATCC 10712   1 1
No Yes Streptomyces collinus Tu 365   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   4 4
No Yes Saccharothrix espanaensis DSM 44229   2 2
No Yes Actinoplanes friuliensis DSM 7358   3 3
No Yes Rhodococcus erythropolis CCM2595   1 1
No Yes Mycobacterium sp. KMS   1 1
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium yongonense 05-1390   1 1
No Yes Mycobacterium intracellulare MOTT-64   1 1
No Yes Mycobacterium indicus pranii MTCC 9506   1 1
No Yes Mycobacterium avium subsp. paratuberculosis MAP4   1 1
No Yes Mycobacterium avium subsp. paratuberculosis K-10   1 1
No Yes Mycobacterium gilvum Spyr1   1 1
No Yes Mycobacterium smegmatis str. MC2 155   1 1
No Yes Clavibacter michiganensis subsp. sepedonicus   1 1
No Yes Clavibacter michiganensis subsp. nebraskensis NCPPB 2581   1 1
No Yes Deinococcus peraridilitoris DSM 19664   1 1
No Yes Clostridium acidurici 9a   1 1
No Yes Clostridium autoethanogenum DSM 10061   1 1
No Yes Clostridium tetani genome 12124569   1 1
No Yes Clostridium pasteurianum BC1   1 1
No Yes Exiguobacterium antarcticum B7   1 1
No Yes Paenibacillus mucilaginosus KNP414   2 2
No Yes Paenibacillus mucilaginosus K02   2 2
No Yes Paenibacillus polymyxa CR1   1 1
No Yes Paenibacillus polymyxa SC2   1 1
No Yes Paenibacillus polymyxa E681   1 1
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   1 1
No Yes Bacillus subtilis subsp. spizizenii str. W23   1 1
No Yes Bacillus toyonensis BCT-7112   2 2
No Yes Bacillus thuringiensis HD-771   2 2
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   2 2
No Yes Bacillus thuringiensis YBT-1518   2 2
No Yes Bacillus thuringiensis Bt407   2 2
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   2 2
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   2 2
No Yes Bacillus thuringiensis BMB171   2 2
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   2 2
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus biovar anthracis str. CI   2 2
No Yes Bacillus cereus AH820   2 2
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus B4264   2 2
No Yes Bacillus cereus G9842   2 2
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 14579   2 2
No Yes Bacillus cereus ATCC 10987   2 2
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   2 2
No Yes Bacillus anthracis str. 'Ames Ancestor'   2 2
No Yes Bacillus anthracis str. Sterne   2 2
No Yes Bacillus anthracis str. Ames   2 2
No Yes Bacillus megaterium WSH-002   2 2
No Yes Bacillus megaterium QM B1551   2 2
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Nonlabens dokdonensis DSW-6   1 1
No Yes Psychroflexus torquis ATCC 700755   1 1
No Yes Geobacter sp. M18   1 1
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Burkholderia phenoliruptrix BR3459a   2 2
No Yes Pandoraea pnomenusa 3kgm   1 1
No Yes Burkholderia sp. YI23   3 3
No Yes Burkholderia sp. CCGE1003   2 2
No Yes Burkholderia sp. CCGE1001   2 2
No Yes Burkholderia sp. KJ006   3 3
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia lata   3 3
No Yes Burkholderia ambifaria MC40-6   4 4
No Yes Burkholderia cenocepacia MC0-3   5 5
No Yes Burkholderia cenocepacia AU 1054   6 6
No Yes Burkholderia cenocepacia J2315   4 4
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Variovorax paradoxus B4   4 4
No Yes Variovorax paradoxus EPS   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   2 2
No Yes Gluconobacter oxydans H24   2 2
No Yes Acetobacter pasteurianus 386B   1 1
No Yes Methylobacterium extorquens DM4   3 3
No Yes Methylobacterium extorquens PA1   2 2
No Yes Sinorhizobium fredii USDA 257   2 2
No Yes Sinorhizobium fredii HH103   2 2
No Yes Sinorhizobium meliloti 2011   3 3
No Yes Sinorhizobium meliloti GR4   6 6
No Yes Sinorhizobium meliloti Rm41   5 5
No Yes Sinorhizobium meliloti SM11   5 5
No Yes Sinorhizobium meliloti BL225C   6 6
No Yes Sinorhizobium meliloti 1021   4 4
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   2 2
No Yes Rhizobium tropici CIAT 899   3 3
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   2 2
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   2 2
No Yes Mesorhizobium australicum WSM2073   1 1
No Yes Hyphomicrobium nitrativorans NL23   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Rhodopseudomonas palustris TIE-1   2 2
No Yes Rhodopseudomonas palustris HaA2   3 3
No Yes Rhodopseudomonas palustris BisB18   2 2
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   2 2
No Yes Bradyrhizobium sp. BTAi1   4 4
No Yes Bradyrhizobium oligotrophicum S58   4 4
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Alcanivorax dieselolei B5   1 1
No Yes Stenotrophomonas maltophilia D457   3 3
No Yes Stenotrophomonas maltophilia JV3   2 2
No Yes Stenotrophomonas maltophilia R551-3   3 3
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Rahnella aquatilis HX2   2 2
No Yes Serratia sp. AS13   1 1
No Yes Serratia plymuthica S13   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia marcescens FGI94   1 1
No Yes Serratia marcescens WW4   2 2
No Yes Serratia liquefaciens ATCC 27592   1 1
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Pantoea ananatis PA13   1 1
No Yes Pantoea ananatis AJ13355   1 1
No Yes Erwinia pyrifoliae DSM 12163   1 1
No Yes Erwinia amylovora CFBP1430   1 1
No Yes Cronobacter sakazakii CMCC 45402   1 1
No Yes Cronobacter sakazakii SP291   1 1
No Yes Cronobacter sakazakii ATCC BAA-894   1 1
No Yes Raoultella ornithinolytica B6   1 1
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae JM45   1 1
No Yes Klebsiella pneumoniae CG43   1 1
No Yes Klebsiella pneumoniae KCTC 2242   1 1
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   1 1
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Enterobacter cloacae EcWSU1   3 3
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   3 3
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   2 2
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   2 2
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Pseudomonas stutzeri RCH2   1 1
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   1 1
No Yes Pseudomonas monteilii SB3101   2 2
No Yes Pseudomonas monteilii SB3078   2 2
No Yes Pseudomonas putida H8234   1 1
No Yes Pseudomonas putida HB3267   2 2
No Yes Pseudomonas putida NBRC 14164   1 1
No Yes Pseudomonas putida DOT-T1E   2 2
No Yes Pseudomonas putida S16   2 2
No Yes Pseudomonas putida BIRD-1   2 2
No Yes Pseudomonas putida W619   2 2
No Yes Pseudomonas putida ND6   2 2
No Yes Pseudomonas putida KT2440   2 2
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Pseudomonas fluorescens F113   2 2
No Yes Pseudomonas fluorescens A506   2 2
No Yes Pseudomonas fluorescens R124   2 2
No Yes Pseudomonas fluorescens Pf0-1   3 3
No Yes Pseudomonas resinovorans NBRC 106553   1 1
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   1 1
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Acinetobacter genomosp. 13TU RUH2624   1 1
No Yes Acinetobacter sp. SH024   1 1
No Yes Acinetobacter calcoaceticus ruh2202   1 1
No Yes Acinetobacter baumannii ZW85-1   1 1
No Yes Acinetobacter baumannii TYTH-1   1 1
No Yes Acinetobacter baumannii BJAB0868   1 1
No Yes Acinetobacter baumannii BJAB0715   1 1
No Yes Acinetobacter baumannii BJAB07104   1 1
No Yes Acinetobacter baumannii TCDC-AB0715   1 1
No Yes Acinetobacter baumannii D1279779   1 1
No Yes Acinetobacter baumannii MDR-TJ   1 1
No Yes Acinetobacter baumannii 1656-2   1 1
No Yes Acinetobacter baumannii ATCC 19606   1 1
No Yes Acinetobacter baumannii AB307-0294   1 1
No Yes Acinetobacter baumannii AYE   1 1
No Yes Acinetobacter baumannii MDR-ZJ06   1 1
No Yes Acinetobacter baumannii AB0057   1 1
No Yes Acinetobacter baumannii ACICU   1 1
No Yes Acinetobacter radioresistens SH164   1 1
No Yes Acinetobacter lwoffii SH145   1 1
No Yes 1_050719N (meta-genome)   2 2
No Yes 2_050719S (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   1 1
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   8 8
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   4 4
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   9 9
No Yes Combined (meta-genome)   28 28
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   21 21
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   6 6
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   6 6
No Yes Dump bottom (Dump bottom) (meta-genome)   21 21
No Yes Dump top (Dump top) (meta-genome)   4 4
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Fungus garden combined (combined) (meta-genome)   15 15
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   25 25
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   22 22
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   12 12
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   2 2
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   6 6
No Yes NCBI 2017_08 genome   28020 28020
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   4 4
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   7 7
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   9 9
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   9 9
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   7 7
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   7 7
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   29 29
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   12 12
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   16 16
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   27 27
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   15 15
No Yes STRING v9.0.5 (STRING)   315 315
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   2 2
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   23 23
No Yes Uniprot 2018_03 genome   8693 8693
No Yes Global Ocean Sampling Expedition (GOS)   14 14
No Yes NCBI plasmid sequences (Plasmids)   68 68
No Yes PDB chains (SCOP 1.75) (PDB)   8 8
No Yes Protein Data Bank (all PDB sequenc)   115 115
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   277 277
No Yes TargetDB (Targets)   2 2

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