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Interleukin 8-like chemokines family domain assignments
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PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 51 significant domains in 51 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1el0A   7.33e-19   0.0000867   4-73   1el0 A:  
1j8iA   3.59e-24   0.0000253   11-70   1j9o A:  
1rjtA   4.8e-18   0.0000571   2-72   1rjt A:  
 
Weak hits:
1a15A   9.53e-20   0.00014   8-67   1a15 A:  
1b2tA   2.86e-22   0.00028   13-70   1b2t A:  
1b3aA   2.79e-30   0.0008   8-65   1b3a A:  
1b50A   5.21e-32   0.0047   10-66   1b50 A:  
1bo0A   4.4e-32   0.00017   10-70   1bo0 A:  
1cm9A   1.1e-25   0.0024   12-69   1cm9 A:  
1dokA   3.23e-28   0.00023   9-76   1dok A:  
1eigA   2.93e-28   0.00026   6-69   1eih A:  
1eqtA   8.06e-30   0.00082   9-66   1b3a A:  
1esrA   2.86e-29   0.00035   8-69   1esr A:  
1f2lA   2.71e-22   0.00028   12-69   1b2t A:  
1f9pA   4.25e-27   0.0019   19-76   1f9p A:  
1f9qA   7.33e-25   0.00088   10-69   1pfn A:  
1f9rA   3.15e-25   0.00087   10-69   1f9r A:  
1f9sA   8.06e-24   0.001   10-69   1pfn A:  
1g2tA   2.49e-29   0.00051   9-62   1g2t A:  
1g91A   1.17e-26   0.00088   10-66   1g91 A:  
1ha6A   3.52e-27   0.00016   5-62   1ha6 A:  
1hunA   8.06e-31   0.0039   11-66   1hum A:  
1icwA   3.81e-22   0.00021   5-68   1icw A:  
1je4A   3.37e-29   0.0039   11-66   1hum A:  
1m8aA   3.81e-28   0.00021   5-70   1m8a A:  
1mgsA   2.49e-27   0.001   7-68   1mgs A:  
1mi2A   1.17e-29   0.00076   7-69   1mi2 A:  
1ml0D   6.74e-27   0.00028   10-75   1dok A:  
1mshA   2.42e-27   0.001   7-68   1mgs A:  
1napA   1.47e-27   0.0021   4-61   1f9p A:  
1nr4A   1.47e-24   0.00027   10-66   1nr4 A:  
1o7zA   8.8e-23   0.00015   8-69   1o80 A:  
1pfmA   8.8e-26   0.00084   7-67   1pfn A:  
1plfA   3.96e-23   0.00067   12-71   1plf A:  
1qe6A   4.99e-26   0.00025   6-70   1qe6 B:  
1qg7A   3.3e-20   0.00016   8-67   1a15 A:  
1qnkA   1.17e-28   0.0008   3-65   1qnk A:  
1rodA   1.61e-26   0.0006   5-67   1rod A:  
1tvxA   1.83e-27   0.0021   9-66   1f9p A:  
1u4lA   2.93e-30   0.0008   9-66   1b3a A:  
1u4pA   3.74e-29   0.00084   9-66   1b3a A:  
1u4rA   4.25e-27   0.00092   9-66   1b3a A:  
1vmcA   1.32e-20   0.00015   11-71    
2bdnA   3.08e-28   0.00023   8-75   1dok A:  
2eotA   2.27e-29   0.0002   6-69   2eot A:  
2fhtA   9.53e-26   0.0024   9-66   1cm9 A:  
2hccA   1.25e-27   0.00068   5-61   2hcc A:  
2hciA   1.03e-27   0.00021   5-68   1m8a A:  
2j7zA   1.1e-20   0.00015   8-68    
2nz1D   9.53e-28   0.00025   8-75   1dok A:  
3il8A   8.06e-29   0.00037   5-68   1qe6 B:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   8045 8045
No Yes Homo sapiens 76_38 Human 63 63
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 29 29
No Yes Gorilla gorilla 76_3.1 Western gorilla 28 28
No Yes Pongo abelii 76_2 Sumatran orangutan 31 31
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 31 31
No Yes Papio anubis 76 Olive baboon 32 32
No Yes Macaca mulatta 76_1 Rhesus monkey 36 36
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 29 29
No Yes Otolemur garnettii 76_3 Small-eared galago 16 16
No Yes Microcebus murinus 76_1 Gray mouse lemur 13 13
No Yes Rattus norvegicus 76_5.0 Norway rat 18 18
No Yes Mus musculus 76_38 House mouse 23 23
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 10 10
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 17 17
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 15 15
No Yes Cavia porcellus 76_3 Domestic guinea pig 14 14
No Yes Oryctolagus cuniculus 76_2 Rabbit 16 16
No Yes Ochotona princeps 76 American pika 9 9
No Yes Tupaia belangeri 76 Northern tree shrew 11 11
No Yes Sus scrofa 76_10.2 Pig 29 29
No Yes Bos taurus 76_3.1 Cattle 19 19
No Yes Ovis aries 76_3.1 Sheep 21 21
No Yes Vicugna pacos 76_1 Alpaca 8 8
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 16 16
No Yes Mustela putorius furo 76_1.0 Domestic ferret 21 21
No Yes Ailuropoda melanoleuca 76_1 Giant panda 21 21
No Yes Canis familiaris 76_3.1 Dog 19 19
No Yes Felis catus 76_6.2 Domestic cat 19 19
No Yes Equus caballus 76_2 Horse 19 19
No Yes Myotis lucifugus 76_2.0 Little brown bat 22 22
No Yes Pteropus vampyrus 76_1 Large flying fox 15 15
No Yes Sorex araneus 76_1 European shrew 8 8
No Yes Erinaceus europaeus 76 Western European hedgehog 12 12
No Yes Procavia capensis 76_1 Cape rock hyrax 7 7
No Yes Loxodonta africana 76_3 African savanna elephant 25 25
No Yes Echinops telfairi 76 Small Madagascar hedgehog 9 9
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 22 21
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 8 8
No Yes Macropus eugenii 76_1.0 Tammar wallaby 7 7
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 9 9
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 7 7
No Yes Ornithorhynchus anatinus 76_5 Platypus 1 1
No Yes Meleagris gallopavo 76_2 Turkey 3 3
No Yes Gallus gallus 76_4 Chicken 1 1
No Yes Anas platyrhynchos 76_1.0 Mallard 2 2
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 3 3
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 3 3
No Yes Anolis carolinensis 76_2.0 Green anole 1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 60 60
No Yes Homo sapiens (NCBI version) Human 37 37
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 16 16
No Yes Homo sapiens 69_37 Human 34 34
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 29 29
No Yes Gorilla gorilla 69_3.1 Western gorilla 24 24
No Yes Pongo abelii 69_2 Sumatran orangutan 31 31
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 29 29
No Yes Macaca mulatta 69_1 Rhesus monkey 32 32
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 20 20
No Yes Otolemur garnettii 69_3 Small-eared galago 16 16
No Yes Microcebus murinus 69_1 Gray mouse lemur 13 13
No Yes Rattus norvegicus 69_3.4 Norway rat 17 17
No Yes Mus musculus 69_38 House mouse 16 16
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 10 10
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 16 16
No Yes Cavia porcellus 69_3 Domestic guinea pig 14 14
No Yes Oryctolagus cuniculus 69_2 Rabbit 15 15
No Yes Ochotona princeps 69 American pika 9 9
No Yes Tupaia belangeri 69 Northern tree shrew 11 11
No Yes Sus scrofa 69_10.2 Pig 21 21
No Yes Bos taurus 69_3.1 Cattle 18 18
No Yes Vicugna pacos 69_1 Alpaca 8 8
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 16 16
No Yes Mustela putorius furo 69_1.0 Domestic ferret 21 21
No Yes Ailuropoda melanoleuca 69_1 Giant panda 20 20
No Yes Canis familiaris 69_3.1 Dog 17 17
No Yes Felis catus 69 Domestic cat 15 15
No Yes Equus caballus 69_2 Horse 17 17
No Yes Myotis lucifugus 69_2.0 Little brown bat 19 19
No Yes Pteropus vampyrus 69_1 Large flying fox 15 15
No Yes Sorex araneus 69_1 European shrew 8 8
No Yes Erinaceus europaeus 69 Western European hedgehog 12 12
No Yes Procavia capensis 69_1 Cape rock hyrax 7 7
No Yes Loxodonta africana 69_3 African savanna elephant 18 18
No Yes Echinops telfairi 69 Small Madagascar hedgehog 9 9
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 8 8
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 8 8
No Yes Macropus eugenii 69_1.0 Tammar wallaby 7 7
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 7 7
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 7 7
No Yes Ornithorhynchus anatinus 69_5 Platypus 1 1
No Yes Meleagris gallopavo 69_2 Turkey 2 2
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 3 3
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 3 3
No Yes Anolis carolinensis 69_2.0 Green anole 1 1
No Yes NCBI 2017_08 genome   2875 2868
No Yes STRING v9.0.5 (STRING)   289 289
No Yes Uniprot 2018_03 genome   1735 1731
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   51 51
No Yes Protein Data Bank (all PDB sequenc)   27 27
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   897 897
No Yes TargetDB (Targets)   1 1
No Yes UniProt viral sequences (Viral)   4 4

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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