Select to display Genome Domains Proteins No ALL 112799 112799 Yes Homo sapiens 76_38 Human 150 113 Yes Pan troglodytes 76_2.1.4 Chimpanzee 49 35 Yes Gorilla gorilla 76_3.1 Western gorilla 71 49 Yes Pongo abelii 76_2 Sumatran orangutan 41 28 Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 41 28 Yes Papio anubis 76 Olive baboon 47 33 Yes Macaca mulatta 76_1 Rhesus monkey 72 49 Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 99 70 Yes Otolemur garnettii 76_3 Small-eared galago 52 36 Yes Microcebus murinus 76_1 Gray mouse lemur 33 23 Yes Rattus norvegicus 76_5.0 Norway rat 49 33 Yes Mus musculus 76_38 House mouse 100 70 Yes Dipodomys ordii 76_1 Ord's kangaroo rat 34 23 Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 42 30 Yes Heterocephalus glaber v1.7-2 Naked mole-rat 53 38 Yes Cavia porcellus 76_3 Domestic guinea pig 41 29 Yes Oryctolagus cuniculus 76_2 Rabbit 50 32 Yes Ochotona princeps 76 American pika 25 19 Yes Tupaia belangeri 76 Northern tree shrew 31 22 Yes Sus scrofa 76_10.2 Pig 49 33 Yes Bos taurus 76_3.1 Cattle 43 31 Yes Ovis aries 76_3.1 Sheep 52 35 Yes Vicugna pacos 76_1 Alpaca 20 15 Yes Tursiops truncatus 76_1 Bottlenose dolphin 35 25 Yes Mustela putorius furo 76_1.0 Domestic ferret 44 29 Yes Ailuropoda melanoleuca 76_1 Giant panda 45 32 Yes Canis familiaris 76_3.1 Dog 62 40 Yes Felis catus 76_6.2 Domestic cat 47 33 Yes Equus caballus 76_2 Horse 47 31 Yes Myotis lucifugus 76_2.0 Little brown bat 37 26 Yes Pteropus vampyrus 76_1 Large flying fox 35 25 Yes Sorex araneus 76_1 European shrew 27 18 Yes Erinaceus europaeus 76 Western European hedgehog 26 19 Yes Procavia capensis 76_1 Cape rock hyrax 32 22 Yes Loxodonta africana 76_3 African savanna elephant 58 37 Yes Echinops telfairi 76 Small Madagascar hedgehog 31 22 Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 51 34 Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 25 17 Yes Macropus eugenii 76_1.0 Tammar wallaby 24 18 Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 59 44 Yes Monodelphis domestica 76_5 Gray short-tailed opossum 50 39 Yes Ornithorhynchus anatinus 76_5 Platypus 27 19 Yes Saccoglossus kowalevskii v3.0 106 75 Yes Petromyzon marinus 76_7.0 Sea lamprey 18 12 Yes Meleagris gallopavo 76_2 Turkey 29 20 Yes Gallus gallus 76_4 Chicken 36 25 Yes Anas platyrhynchos 76_1.0 Mallard 33 22 Yes Taeniopygia guttata 76_3.2.4 Zebra finch 32 23 Yes Ficedula albicollis 76_1.0 Collared flycatcher 31 20 Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 37 26 Yes Anolis carolinensis 76_2.0 Green anole 56 45 Yes Xenopus laevis African clawed frog 64 49 Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 53 38 Yes Latimeria chalumnae 76_1 Coelacanth 41 30 Yes Lepisosteus oculatus 76 Spotted gar 51 34 Yes Gadus morhua 76_1 Atlantic cod 45 33 Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 64 43 Yes Takifugu rubripes 76_4 Torafugu 139 91 Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 60 44 Yes Oryzias latipes 76_1 Japanese medaka 68 52 Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 50 35 Yes Poecilia formosa 76 Amazon molly 50 35 Yes Oreochromis niloticus 76_1.0 Nile tilapia 66 45 Yes Astyanax mexicanus 76 Mexican tetra 48 35 Yes Danio rerio 76_9 Zebrafish 101 71 Yes Oikopleura dioica 49 37 Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 42 32 Yes Ciona intestinalis 76 Vase tunicate 11 9 Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 27 23 Yes Adineta vaga 76 51 Yes Octopus bimaculoides 280 40 27 Yes Crassostrea gigas 22 Pacific oyster 18 14 Yes Lottia gigantea Owl limpet 14 12 Yes Helobdella robusta 15 11 Yes Capitella sp. I 19 15 Yes Danaus plexippus OGS1.0 Monarch butterfly 23 16 Yes Heliconius melpomene Postman butterfly 21 15 Yes Bombyx mori Domestic silkworm 18 13 Yes Nasonia vitripennis Jewel wasp 54 49 Yes Apis mellifera 38.2d (Not maintained) Honey bee 32 22 Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 24 19 Yes Linepithema humile v1.1 Argentine ant 15 11 Yes Pogonomyrmex barbatus v1.2 Red harvester ant 14 12 Yes Solenopsis invicta v.2.2.3 Red fire ant 12 10 Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 24 17 Yes Atta cephalotes v1.1 18 15 Yes Camponotus floridanus v3.3 Florida carpenter ant 20 15 Yes Lucilia cuprina Australian sheep blowfly 12 10 Yes Drosophila grimshawi 1.3 28 20 Yes Drosophila willistoni 1.3 34 25 Yes Drosophila pseudoobscura 2.13 32 24 Yes Drosophila persimilis 1.3 28 23 Yes Drosophila suzukii 33 23 Yes Drosophila yakuba 1.3 34 25 Yes Drosophila simulans 1.3 26 20 Yes Drosophila sechellia 1.3 26 20 Yes Drosophila melanogaster 76_5 Fruit fly 63 42 Yes Drosophila erecta 1.3 31 23 Yes Drosophila ananassae 1.3 31 23 Yes Drosophila virilis 1.2 31 22 Yes Drosophila mojavensis 1.3 28 20 Yes Megaselia scalaris 22 6 5 Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 23 16 Yes Culex pipiens quinquefasciatus Southern house mosquito 29 20 Yes Anopheles darlingi 22 American malaria mosquito 14 10 Yes Anopheles gambiae 49_3j African malaria mosquito 18 13 Yes Tribolium castaneum 3.0 Red flour beetle 33 26 Yes Pediculus humanus corporis Human body louse 17 14 Yes Acyrthosiphon pisum Pea aphid 29 22 Yes Rhodnius prolixus 22 17 13 Yes Daphnia pulex Common water flea 46 42 Yes Strigamia maritima 22 22 20 Yes Sarcoptes scabiei 15 12 Yes Tetranychus urticae Two-spotted spider mite 42 27 Yes Ixodes scapularis Black-legged tick 14 10 Yes Pristionchus pacificus 45 42 Yes Meloidogyne incognita Southern root-knot nematode 62 47 Yes Meloidogyne hapla 41 36 Yes Onchocerca volvulus 22 24 18 Yes Brugia malayi WS250 Agent of lymphatic filariasis 36 28 Yes Caenorhabditis japonica 30 24 Yes Caenorhabditis brenneri 80 67 Yes Caenorhabditis remanei 82 74 Yes Caenorhabditis elegans 76_235 Roundworm 40 28 Yes Caenorhabditis briggsae 2 60 51 Yes Trichinella spiralis 22 17 13 Yes Hymenolepis microstoma 21 14 Yes Echinococcus multilocularis 19 13 Yes Echinococcus granulosus 18 12 Yes Taenia solium Pork tapeworm 20 14 Yes Schistosoma mansoni 22 15 Yes Mnemiopsis leidyi Sea walnut 19 16 Yes Thelohanellus kitauei 8 6 Yes Acropora digitifera v1.0 23 20 Yes Nematostella vectensis 1.0 Starlet sea anemone 25 21 Yes Hydra vulgaris 32 29 Yes Amphimedon queenslandica 23 20 Yes Trichoplax adhaerens 15 11 Yes Proterospongia sp. ATCC 50818 19 17 Yes Monosiga brevicollis 11 9 Yes Sphaeroforma arctica JP610 21 19 Yes Capsaspora owczarzaki ATCC 30864 20 15 Yes Conidiobolus coronatus NRRL28638 v1.0 17 13 Yes Mortierella verticillata NRRL 6337 29 25 Yes Phycomyces blakesleeanus 25 19 Yes Rhizopus oryzae RA 99-880 255 247 Yes Mucor circinelloides 25 19 Yes Rhizomucor miehei CAU432 27 21 Yes Malassezia globosa CBS 7966 12 8 Yes Sporisorium reilianum 22 14 10 Yes Ustilago maydis 6 5 Yes Mixia osmundae IAM 14324 v1.0 3 3 Yes Cronartium quercuum f. sp. fusiforme G11 v1.0 17 15 Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3 16 15 Yes Melampsora laricis-populina 10 8 Yes Rhodotorula graminis WP1 v1.0 8 6 Yes Sporobolomyces roseus IAM 13481 8 6 Yes Microbotryum violaceum 22 11 10 Yes Wallemia sebi v1.0 6 5 Yes Sphaerobolus stellatus v1.0 52 49 Yes Piloderma croceum F 1598 v1.0 24 22 Yes Serpula lacrymans var. lacrymans S7.9 17 16 Yes Coniophora puteana 14 13 Yes Hydnomerulius pinastri v2.0 15 13 Yes Paxillus rubicundulus Ve08.2h10 v1.0 19 17 Yes Pisolithus microcarpus 441 v1.0 25 24 Yes Pisolithus tinctorius Marx 270 v1.0 58 56 Yes Scleroderma citrinum Foug A v1.0 94 92 Yes Coprinopsis cinerea okayama7 130 v3 14 12 Yes Pleurotus ostreatus Oyster mushroom 15 13 Yes Amanita thiersii Skay4041 v1.0 26 24 Yes Amanita muscaria Koide v1.0 Fly agaric 30 29 Yes Galerina marginata v1.0 21 20 Yes Hebeloma cylindrosporum h7 v2.0 16 14 Yes Laccaria bicolor S238N-H82 24 22 Yes Agaricus bisporus var. bisporus 18 16 Yes Schizophyllum commune 18 17 Yes Stereum hirsutum FP-91666 SS1 v1.0 18 16 Yes Heterobasidion annosum 18 16 Yes Gloeophyllum trabeum v1.0 21 19 Yes Punctularia strigosozonata v1.0 34 32 Yes Sebacina vermifera MAFF 305830 v1.0 9 8 Yes Fomitiporia mediterranea v1.0 16 14 Yes Tulasnella calospora AL13/4D v1.0 18 16 Yes Postia placenta 11 10 Yes Wolfiporia cocos MD-104 SS10 v1.0 18 15 Yes Fomitopsis pinicola v1.0 27 25 Yes Fomitopsis pinicola FP-58527 SS1 v3.0 20 18 Yes Phanerochaete chrysosporium RP-78 2.1 81 80 Yes Dichomitus squalens 15 13 Yes Trametes versicolor v1.0 18 16 Yes Tremella mesenterica Witches' butter 31 29 Yes Daldinia eschscholzii EC12 v1.0 14 11 Yes Apiospora montagnei NRRL 25634 v1.0 15 12 Yes Magnaporthe poae ATCC 64411 22 14 12 Yes Magnaporthe grisea 70-15 17 14 Yes Podospora anserina 14 13 Yes Sporotrichum thermophile ATCC 42464 12 10 Yes Thielavia terrestris NRRL 8126 11 9 Yes Chaetomium globosum CBS 148.51 32 31 Yes Neurospora tetrasperma 13 11 Yes Neurospora discreta FGSC 8579 13 11 Yes Neurospora crassa OR74A 15 13 Yes Cryphonectria parasitica Chestnut blight fungus 13 11 Yes Verticillium albo-atrum VaMs.102 10 9 Yes Verticillium dahliae VdLs.17 13 12 Yes Acremonium alcalophilum v 1.0 13 10 Yes Glomerella graminicola 22 18 15 Yes Fusarium graminearum 13 11 Yes Nectria haematococca mpVI 20 15 Yes Fusarium oxysporum f. sp. lycopersici 4286 40 27 Yes Fusarium verticillioides 7600 18 14 Yes Trichoderma asperellum CBS 433.97 v1.0 14 11 Yes Trichoderma atroviride 12 9 Yes Trichoderma citrinoviride v1.0 13 10 Yes Trichoderma reesei 1.2 12 9 Yes Trichoderma virens Gv29-8 11 9 Yes Trichoderma longibrachiatum ATCC 18648 v1.0 13 10 Yes Trichoderma harzianum CBS 226.95 v1.0 13 11 Yes Amorphotheca resinae v1.0 Creosote fungus 13 11 Yes Botrytis cinerea B05.10 24 21 Yes Sclerotinia sclerotiorum 30 27 Yes Blumeria graminis 22 11 10 Yes Didymella exigua CBS 183.55 v1.0 10 8 Yes Leptosphaeria maculans 22 11 9 Yes Setosphaeria turcica v1.0 16 13 Yes Cochliobolus miyabeanus ATCC 44560 v1.0 10 8 Yes Cochliobolus victoriae FI3 v1.0 12 10 Yes Cochliobolus carbonum 26-R-13 v1.0 10 8 Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 9 7 Yes Alternaria brassicicola 11 9 Yes Cochliobolus lunatus m118 v2.0 12 10 Yes Pyrenophora teres f. teres 22 19 17 Yes Pyrenophora tritici-repentis 12 10 Yes Stagonospora nodorum 11 10 Yes Mycosphaerella graminicola IPO323 11 9 Yes Zasmidium cellare ATCC 36951 v1.0 14 11 Yes Dothistroma septosporum 11 8 Yes Septoria musiva v1.0 11 8 Yes Mycosphaerella fijiensis CIRAD86 7 6 Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0 11 9 Yes Paracoccidioides brasiliensis Pb18 9 8 Yes Coccidioides posadasii RMSCC 3488 12 9 Yes Coccidioides immitis RS 15 13 Yes Ajellomyces dermatitidis SLH14081 12 10 Yes Histoplasma capsulatum class NAmI strain WU24 16 11 Yes Microsporum canis CBS 113480 9 7 Yes Trichophyton equinum CBS 127.97 8 7 Yes Trichophyton verrucosum HKI 0517 11 9 Yes Arthroderma benhamiae CBS 112371 10 8 Yes Trichophyton tonsurans CBS 112818 9 7 Yes Trichophyton rubrum CBS 118892 9 7 Yes Uncinocarpus reesii 1704 9 8 Yes Aspergillus zonatus v1.0 10 7 Yes Penicillium chrysogenum Wisconsin 54-1255 12 10 Yes Penicillium chrysogenum v1.0 11 9 Yes Aspergillus acidus v1.0 11 8 Yes Aspergillus fumigatus Af293 12 10 Yes Aspergillus brasiliensis v1.0 12 9 Yes Aspergillus nidulans FGSC A4 9 7 Yes Aspergillus sydowii v1.0 10 8 Yes Aspergillus versicolor v1.0 10 8 Yes Aspergillus glaucus 11 8 Yes Aspergillus carbonarius ITEM 5010 11 8 Yes Neosartorya fischeri NRRL 181 11 9 Yes Aspergillus terreus NIH2624 9 7 Yes Aspergillus tubingensis v1.0 11 8 Yes Aspergillus wentii v1.0 10 8 Yes Aspergillus oryzae RIB40 8 7 Yes Aspergillus niger 22 9 7 Yes Aspergillus niger ATCC 1015 6 4 Yes Aspergillus flavus NRRL3357 9 7 Yes Aspergillus clavatus NRRL 1 10 8 Yes Penicillium marneffei ATCC 18224 20 17 Yes Tuber melanosporum Mel28 22 9 7 Yes Tuber melanosporum Vittad Perigord truffle 236 234 Yes Hansenula polymorpha v2.0 4 3 Yes Dekkera bruxellensis CBS 2499 v2.0 5 4 Yes Pichia membranifaciens v1.0 5 4 Yes Candida tanzawaensis NRRL Y-17324 v1.0 5 4 Yes Candida dubliniensis CD36 4 3 Yes Candida tropicalis MYA-3404 3 2 Yes Candida parapsilosis 4 3 Yes Candida albicans SC5314 5 4 Yes Lodderomyces elongisporus NRRL YB-4239 4 3 Yes Babjeviella inositovora NRRL Y-12698 v1.0 5 4 Yes Pichia stipitis CBS 6054 3 2 Yes Candida guilliermondii ATCC 6260 4 3 Yes Hyphopichia burtonii NRRL Y-1933 v1.0 3 2 Yes Debaromyces hansenii 4 3 Yes Wickerhamomyces anomalus 4 3 Yes Pichia pastoris GS115 4 3 Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1 6 4 Yes Yarrowia lipolytica CLIB122 4 3 Yes Candida lusitaniae ATCC 42720 4 3 Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0 4 3 Yes Vanderwaltozyma polyspora DSM 70294 4 3 Yes Candida glabrata CBS138 4 3 Yes Kluyveromyces thermotolerans CBS 6340 4 3 Yes Lachancea kluyveri 4 3 Yes Kluyveromyces waltii 4 3 Yes Ashbya gossypii ATCC 10895 5 4 Yes Zygosaccharomyces rouxii 4 3 Yes Saccharomyces mikatae MIT 4 3 Yes Saccharomyces paradoxus MIT 4 3 Yes Saccharomyces cerevisiae 76 Baker's yeast 4 3 Yes Saccharomyces bayanus MIT 5 4 Yes Kluyveromyces lactis 5 4 Yes Schizosaccharomyces cryophilus OY26 22 13 9 Yes Schizosaccharomyces octosporus yFS286 13 9 Yes Schizosaccharomyces japonicus yFS275 16 12 Yes Schizosaccharomyces pombe Fission yeast 13 9 Yes Catenaria anguillulae PL171 v1.0 22 19 Yes Allomyces macrogynus ATCC 38327 31 21 Yes Spizellomyces punctatus DAOM BR117 41 35 Yes Dictyostelium discoideum 23 18 Yes Dictyostelium purpureum 29 27 Yes Entamoeba dispar 1.2 12 10 Yes Entamoeba invadens 1.2 10 7 Yes Entamoeba histolytica 1 11 9 Yes Selaginella moellendorffii 31 22 Yes Pinus taeda Loblolly pine 13 9 Yes Picea abies Norway spruce 3 2 Yes Eucalyptus grandis v201 Rose gum 36 22 Yes Theobroma cacao B97-61/B2 v1 Cacao 224 217 Yes Gossypium raimondii v221 107 66 Yes Citrus clementina v165 18 12 Yes Citrus sinensis v154 Sweet orange 49 31 Yes Thellungiella halophila v173 25 16 Yes Brassica rapa Chiifu-401 1.2 Field mustard 27 19 Yes Capsella rubella v183 22 16 Yes Arabidopsis lyrata Lyrate rockcress 21 15 Yes Arabidopsis thaliana 10 Thale cress 23 17 Yes Carica papaya Papaya 22 17 Yes Medicago truncatula Barrel medic 54 35 Yes Phaseolus vulgaris v186 French bean 29 21 Yes Glycine max v109 Soybean 53 42 Yes Cucumis sativus v122 Cucumber 51 39 Yes Fragaria vesca Wild strawberry 27 22 Yes Malus domestica v196 Apple 25 23 Yes Prunus persica v139 Peach 34 28 Yes Linum usitatissimum v200 Flax 34 24 Yes Manihot esculenta v147 Cassava 33 24 Yes Populus trichocarpa v156 Black cottonwood 31 22 Yes Vitis vinifera Wine grape 15 12 Yes Mimulus guttatus v140 Spotted monkey flower 23 16 Yes Solanum lycopersicum v.2.3 Tomato 31 23 Yes Solanum tuberosum Potato 22 19 Yes Actinidia chinensis Hongyang 33 24 Yes Aquilegia coerulea v195 60 41 Yes Triticum urartu 22 17 12 Yes Triticum aestivum 22 Bread wheat 63 50 Yes Aegilops tauschii 22 19 13 Yes Brachypodium distachyon Stiff brome 34 24 Yes Oryza barthii 22 African wild rice 47 32 Yes Oryza meridionalis 22 43 27 Yes Oryza glumaepatula 22 34 25 Yes Oryza glaberrima African rice 21 14 Yes Oryza punctata 22 32 20 Yes Oryza nivara 22 47 30 Yes Oryza brachyantha 22 Malo sina 19 13 Yes Oryza sativa ssp. japonica 5.0 Japanese rice 819 812 Yes Oryza sativa v193 Rice 822 815 Yes Phyllostachys heterocycla var. pubescens Kikko-chiku 44 35 Yes Panicum virgatum v202 Switchgrass 41 27 Yes Setaria italica v164 Foxtail millet 22 14 Yes Zea mays subsp. mays Maize 29 24 Yes Zea mays v181 Maize 27 21 Yes Sorghum bicolor Sorghum 24 21 Yes Musa balbisiana Balbis banana 153 146 Yes Musa acuminata 22 Wild Malaysian banana 19 14 Yes Amborella trichopoda 22 20 13 Yes Physcomitrella patens 46 35 Yes Coccomyxa subellipsoidea sp. C-169 v2 10 8 Yes Asterochloris sp. Cgr/DA1pho v1.0 8 7 Yes Chlorella variabilis sp. NC64A 16 15 Yes Chlorella vulgaris 12 9 Yes Volvox carteri f. nagariensis 13 8 Yes Volvox carteri v199 14 9 Yes Chlamydomonas reinhardtii 4.0 13 9 Yes Ostreococcus sp. RCC809 6 5 Yes Ostreococcus lucimarinus CCE9901 10 8 Yes Ostreococcus tauri 5 4 Yes Bathycoccus prasinos 11 9 Yes Micromonas sp. RCC299 8 7 Yes Micromonas pusilla CCMP1545 v3.0 13 11 Yes Cyanidioschyzon merolae strain 10D 22 4 3 Yes Cyanidioschyzon merolae 4 3 Yes Porphyridium purpureum 02_2012 11 9 Yes Thecamonas trahens ATCC 50062 8 8 Yes Bigelowiella natans CCMP2755 22 50 44 Yes Giardia lamblia 2.3 3 3 Yes Cyanophora paradoxa 20 18 Yes Leishmania mexicana 2.4 2 2 Yes Leishmania major strain Friedlin 2 2 Yes Leishmania infantum JPCM5 2.4 2 2 Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4 2 2 Yes Trypanosoma vivax 1 1 Yes Trypanosoma cruzi strain CL Brener 2 2 Yes Trypanosoma brucei gambiense v4.1 1 1 Yes Trypanosoma brucei TREU927 v4.1 1 1 Yes Ectocarpus siliculosus 21 17 Yes Aureococcus anophagefferens 6 6 Yes Albugo laibachii 22 40 35 Yes Pythium iwayamai DAOM BR242034 22 29 25 Yes Pythium arrhenomanes ATCC 12531 22 38 33 Yes Pythium ultimum v1.7-2 58 54 Yes Pythium aphanidermatum DAOM BR444 22 24 19 Yes Pythium irregulare DAOM BR486 22 24 19 Yes Pythium vexans DAOM BR484 22 28 23 Yes Phytophthora ramorum 1.1 Sudden oak death agent 101 94 Yes Phytophthora sojae 1.1 165 159 Yes Phytophthora infestans T30-4 84 79 Yes Phytophthora capsici 82 76 Yes Hyaloperonospora arabidopsidis 22 34 32 Yes Phaeodactylum tricornutum CCAP 1055/1 8 8 Yes Fragilariopsis cylindrus 7 7 Yes Thalassiosira pseudonana CCMP1335 17 12 Yes Perkinsus marinus ATCC 50983 25 24 Yes Paramecium tetraurelia 51 48 Yes Tetrahymena thermophila SB210 1 24 19 Yes Ichthyophthirius multifiliis strain G5 7 6 Yes Cryptosporidium hominis 7 5 Yes Cryptosporidium muris 7 5 Yes Cryptosporidium parvum Iowa II 7 5 Yes Neospora caninum 6 5 Yes Toxoplasma gondii VEG 5 4 Yes Toxoplasma gondii ME49 6 5 Yes Toxoplasma gondii GT1 6 5 Yes Babesia bovis T2Bo 10 6 Yes Theileria parva 5 3 Yes Theileria annulata 5 3 Yes Plasmodium falciparum 3D7 5 4 Yes Plasmodium vivax SaI-1 7.0 4 3 Yes Plasmodium knowlesi strain H 5 4 Yes Plasmodium yoelii ssp. yoelii 1 5 4 Yes Plasmodium chabaudi 5 4 Yes Plasmodium berghei ANKA 5 4 Yes Symbiodinium minutum clade B1 v1.2 16 13 Yes Naegleria gruberi 12 10 Yes Trichomonas vaginalis 96 73 Yes Guillardia theta CCMP2712 v1.0 32 27 Yes Emiliania huxleyi CCMP1516 114 109 No Acaryochloris marina MBIC11017 3 2 No Microcoleus sp. PCC 7113 2 1 No Calothrix sp. PCC 7507 2 1 No Anabaena variabilis ATCC 29413 2 1 No Nostoc sp. PCC 7107 2 1 No Nostoc punctiforme PCC 73102 4 2 No Nostoc sp. PCC 7120 2 1 No Leadbetterella byssophila DSM 17132 1 1 No Runella slithyformis DSM 19594 1 1 No Pedobacter saltans DSM 12145 1 1 No Planctomyces limnophilus DSM 3776 2 1 No Rhodopirellula baltica SH 1 1 1 No Pirellula staleyi DSM 6068 1 1 No Sorangium cellulosum 'So ce 56' 3 2 No Rhodospirillum photometricum DSM 122 1 1 No Magnetospirillum magneticum AMB-1 3 2 No Azospirillum lipoferum 4B 1 1 No Metallosphaera cuprina Ar-4 1 1 No Metallosphaera sedula DSM 5348 1 1 No Acidianus hospitalis W1 3 3 No Sulfolobus tokodaii str. 7 2 2 No Sulfolobus islandicus Y.N.15.51 2 2 No Sulfolobus solfataricus P2 3 3 No Sulfolobus acidocaldarius DSM 639 2 2 Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 124 103 Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 44 30 Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 18 13 Yes Ascaris suum Victoria/Ghent Pig roundworm 33 27 Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 36 24 Yes Cryptococcus neoformans var. grubii H99 11 10 Yes Cryptococcus neoformans B-3501A 16 14 Yes Cryptococcus neoformans JEC21 13 12 Yes Paracoccidioides brasiliensis Pb01 12 11 Yes Paracoccidioides brasiliensis Pb03 10 9 Yes Coccidioides posadasii str. Silveira 11 9 Yes Coccidioides immitis RMSCC 3703 11 9 Yes Coccidioides immitis RMSCC 2394 11 9 Yes Coccidioides immitis H538.4 10 8 Yes Ajellomyces dermatitidis ER-3 11 9 Yes Histoplasma capsulatum H143 9 7 Yes Histoplasma capsulatum H88 12 10 Yes Histoplasma capsulatum G186AR 12 10 Yes Aspergillus fumigatus A1163 11 9 Yes Candida albicans WO-1 5 4 Yes Saccharomyces cerevisiae UC5 4 3 Yes Saccharomyces cerevisiae PW5 4 3 Yes Saccharomyces cerevisiae FL100 2 1 Yes Saccharomyces cerevisiae CLIB324 2 2 Yes Saccharomyces cerevisiae CBS7960 1 1 Yes Saccharomyces cerevisiae YJM269 1 1 Yes Saccharomyces cerevisiae T7 4 3 Yes Saccharomyces cerevisiae FostersB 4 3 Yes Saccharomyces cerevisiae FostersO 4 3 Yes Saccharomyces cerevisiae VL3 3 2 Yes Saccharomyces cerevisiae Vin13 4 3 Yes Saccharomyces cerevisiae LalvinQA23 3 2 Yes Saccharomyces cerevisiae AWRI796 3 2 Yes Saccharomyces cerevisiae Sigma1278b 4 3 Yes Saccharomyces cerevisiae W303 4 3 Yes Saccharomyces cerevisiae JAY291 4 3 Yes Saccharomyces cerevisiae AWRI1631 1 1 Yes Saccharomyces cerevisiae T73 3 2 Yes Saccharomyces cerevisiae CLIB215 2 2 Yes Saccharomyces cerevisiae YJM789 4 3 Yes Saccharomyces cerevisiae YJM789 4 3 Yes Saccharomyces cerevisiae RM11-1a 2 2 Yes Saccharomyces cerevisiae RM11-1a 3 3 Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 4 3 Yes Schizosaccharomyces pombe 972h- 13 9 Yes Batrachochytrium dendrobatidis JEL423 16 13 Yes Batrachochytrium dendrobatidis JAM81 16 10 Yes Theobroma cacao Matina 1-6 v0.9 Cacao 188 182 Yes Hordeum vulgare 22 Domesticated barley 48 35 Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 127 119 Yes Trypanosoma brucei Lister 427 v4.1 1 1 Yes Neospora caninum Nc-Liverpool 6.2 6 5 Yes Plasmodium falciparum HB3 5 4 Yes Plasmodium falciparum Dd2 3 2 No Oscillatoria acuminata PCC 6304 2 1 No Stanieria cyanosphaera PCC 7437 2 1 No Calothrix parietina Calothrix sp. PCC 6303 4 2 No Cylindrospermum stagnale PCC 7417 1 1 No Anabaena cylindrica PCC 7122 2 1 No Emticicia oligotrophica DSM 17448 1 1 No Sorangium cellulosum So0157-2 3 2 No Candidatus Nitrososphaera gargensis Ga9.2 1 1 No Sulfolobus islandicus LAL14/1 2 2 No Sulfolobus islandicus REY15A 2 2 No Sulfolobus islandicus HVE10/4 2 2 No Sulfolobus islandicus Y.G.57.14 2 2 No Sulfolobus islandicus L.S.2.15 2 2 No Sulfolobus islandicus M.16.27 2 2 No Sulfolobus islandicus M.14.25 2 2 No Sulfolobus islandicus M.16.4 2 2 No Sulfolobus islandicus L.D.8.5 2 2 No Sulfolobus solfataricus 98/2 2 2 No Sulfolobus acidocaldarius SUSAZ 2 2 No Sulfolobus acidocaldarius Ron12/I 2 2 No Sulfolobus acidocaldarius N8 2 2 Yes Homo sapiens 75_37 (old version GRC) Human 159 121 Yes Homo sapiens Human 77 57 Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 47 32 Yes Heliconius numata 10 7 Yes Loa loa v3.3 (Request) Eye worm 26 21 Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 25 21 Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 22 17 Yes Moniliophthora perniciosa FA553 43 42 Yes Encephalitozoon intestinalis 5 3 Yes Encephalitozoon cuniculi (endoparasite) 5 3 Yes Picea sitchensis Sitka spruce 1 1 Yes Lotus japonicus 16 13 Yes Malus x domestica (Duplicate) Apple 25 23 Yes Ricinus communis Castor bean 17 13 Yes Nicotiana benthamiana 0.4.4 (Early draft) 43 32 Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 31 23 Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 31 23 Yes Phoenix dactylifera Date palm 18 15 Yes Homo sapiens 69_37 Human 46 34 Yes Pan troglodytes 69_2.1.4 Chimpanzee 44 32 Yes Gorilla gorilla 69_3.1 Western gorilla 42 29 Yes Pongo abelii 69_2 Sumatran orangutan 41 28 Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 38 26 Yes Macaca mulatta 69_1 Rhesus monkey 44 31 Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 53 36 Yes Otolemur garnettii 69_3 Small-eared galago 51 35 Yes Microcebus murinus 69_1 Gray mouse lemur 33 23 Yes Rattus norvegicus 69_3.4 Norway rat 49 33 Yes Mus musculus 69_38 House mouse 45 31 Yes Dipodomys ordii 69_1 Ord's kangaroo rat 34 23 Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 38 28 Yes Cavia porcellus 69_3 Domestic guinea pig 40 28 Yes Oryctolagus cuniculus 69_2 Rabbit 48 31 Yes Ochotona princeps 69 American pika 25 19 Yes Tupaia belangeri 69 Northern tree shrew 31 22 Yes Sus scrofa 69_10.2 Pig 36 25 Yes Bos taurus 69_3.1 Cattle 42 30 Yes Vicugna pacos 69_1 Alpaca 20 15 Yes Tursiops truncatus 69_1 Bottlenose dolphin 35 25 Yes Mustela putorius furo 69_1.0 Domestic ferret 44 29 Yes Ailuropoda melanoleuca 69_1 Giant panda 41 29 Yes Canis familiaris 69_3.1 Dog 45 30 Yes Felis catus 69 Domestic cat 29 22 Yes Equus caballus 69_2 Horse 39 27 Yes Myotis lucifugus 69_2.0 Little brown bat 36 25 Yes Pteropus vampyrus 69_1 Large flying fox 35 25 Yes Sorex araneus 69_1 European shrew 27 18 Yes Erinaceus europaeus 69 Western European hedgehog 26 19 Yes Procavia capensis 69_1 Cape rock hyrax 32 22 Yes Loxodonta africana 69_3 African savanna elephant 39 26 Yes Echinops telfairi 69 Small Madagascar hedgehog 31 22 Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 24 20 Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 25 17 Yes Macropus eugenii 69_1.0 Tammar wallaby 24 18 Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 49 36 Yes Monodelphis domestica 69_5 Gray short-tailed opossum 48 37 Yes Ornithorhynchus anatinus 69_5 Platypus 24 17 Yes Petromyzon marinus 69_7.0 Sea lamprey 16 11 Yes Meleagris gallopavo 69_2 Turkey 27 18 Yes Gallus gallus 69_2 Chicken 30 20 Yes Taeniopygia guttata 69_3.2.4 Zebra finch 32 23 Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 33 23 Yes Anolis carolinensis 69_2.0 Green anole 38 27 Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 41 30 Yes Latimeria chalumnae 69_1 Coelacanth 37 26 Yes Gadus morhua 69_1 Atlantic cod 45 33 Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 48 34 Yes Takifugu rubripes 69_4 Torafugu 48 34 Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 49 35 Yes Oryzias latipes 69_1 Japanese medaka 57 43 Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 48 34 Yes Oreochromis niloticus 69_1.0 Nile tilapia 50 35 Yes Danio rerio 69_9 Zebrafish 48 35 Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 13 11 Yes Ciona intestinalis 69 Vase tunicate 11 9 Yes Drosophila melanogaster 69_5 Fruit fly 32 23 Yes Caenorhabditis elegans 69_215 Roundworm 28 20 Yes Saccharomyces cerevisiae 69_4 Baker's yeast 4 3 Yes Arabidopsis thaliana 10 Thale cress 20 14 No 2_050719S (meta-genome) 1 1 No Air microbial communities Singapore indoor air filters 2 (meta-genome) 3 2 No Atta cephalotes fungus garden (ACEF) (meta-genome) 114 114 No Crater Hills (meta-genome) 1 1 No Cyphomyrmex longiscapus fungus garden (meta-genome) 7 7 No Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome) 1 1 No Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome) 1 1 No Dump bottom (Dump bottom) (meta-genome) 2 2 No Dump top (Dump top) (meta-genome) 4 3 No Endophytic microbiome from Rice (meta-genome) 118 118 No Fungus garden combined (combined) (meta-genome) 1 1 No Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome) 8 8 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome) 4 4 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome) 3 3 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome) 1 1 No Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome) 1 1 No Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome) 2 2 No Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) 9 9 No Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome) 4 4 No Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) 1 1 No Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome) 1 1 No Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome) 3 3 No NCBI 2017_08 genome 38108 26465 No Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) 1 1 No Protozoadb 2010_08 (Protozoadb) 367 286 No Soil microbial communities from Minnesota Farm (meta-genome) 5 3 No Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) 4 4 No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) 10 10 No Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome) 9 9 No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) 10 10 No Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome) 4 4 No STRING v9.0.5 (STRING) 3916 3248 No Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) 1 1 No Uniprot 2018_03 genome 41254 32692 No Uranium Contaminated Groundwater FW106 (meta-genome) 1 1 No Global Ocean Sampling Expedition (GOS) 150 144 No NCBI viral sequences (Viral) 1 1 No PDB chains (SCOP 1.75 ) (PDB) 35 33 No Protein Data Bank (all PDB sequenc) 321 296 No SCOP2 SCOPe CATH ECOD (all domain sequ) 651 651 No TargetDB 107 86
