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GCC-box binding domain family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1gccA   7.91e-25   0.0000215   2-62   1gcc A:  
2gccA   1.19e-24   0.0000215   5-65   1gcc A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   9188 9188
No Yes Selaginella moellendorffii   4 4
No Yes Pinus taeda Loblolly pine 41 36
No Yes Picea abies Norway spruce 23 23
No Yes Eucalyptus grandis v201 Rose gum 41 41
No Yes Theobroma cacao B97-61/B2 v1 Cacao 23 23
No Yes Gossypium raimondii v221   69 69
No Yes Citrus clementina v165   35 35
No Yes Citrus sinensis v154 Sweet orange 33 33
No Yes Thellungiella halophila v173   27 27
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 47 47
No Yes Capsella rubella v183   27 27
No Yes Arabidopsis lyrata Lyrate rockcress 26 26
No Yes Arabidopsis thaliana 10 Thale cress 28 28
No Yes Carica papaya Papaya 15 15
No Yes Medicago truncatula Barrel medic 43 43
No Yes Phaseolus vulgaris v186 French bean 38 38
No Yes Glycine max v109 Soybean 75 75
No Yes Cucumis sativus v122 Cucumber 24 24
No Yes Fragaria vesca Wild strawberry 24 24
No Yes Malus domestica v196 Apple 56 56
No Yes Prunus persica v139 Peach 22 22
No Yes Linum usitatissimum v200 Flax 52 52
No Yes Manihot esculenta v147 Cassava 42 42
No Yes Populus trichocarpa v156 Black cottonwood 43 43
No Yes Vitis vinifera Wine grape 27 26
No Yes Mimulus guttatus v140 Spotted monkey flower 26 26
No Yes Solanum lycopersicum v.2.3 Tomato 37 37
No Yes Solanum tuberosum Potato 40 40
No Yes Actinidia chinensis Hongyang   30 30
No Yes Aquilegia coerulea v195   14 14
No Yes Triticum urartu 22   1 1
No Yes Triticum aestivum 22 Bread wheat 19 19
No Yes Aegilops tauschii 22   5 5
No Yes Brachypodium distachyon Stiff brome 9 9
No Yes Oryza barthii 22 African wild rice 13 13
No Yes Oryza meridionalis 22   17 17
No Yes Oryza glumaepatula 22   16 16
No Yes Oryza glaberrima African rice 19 19
No Yes Oryza punctata 22   21 21
No Yes Oryza nivara 22   20 20
No Yes Oryza brachyantha 22 Malo sina 7 7
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 26 26
No Yes Oryza sativa v193 Rice 26 26
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 14 14
No Yes Panicum virgatum v202 Switchgrass 32 32
No Yes Setaria italica v164 Foxtail millet 21 21
No Yes Zea mays subsp. mays Maize 22 22
No Yes Zea mays v181 Maize 26 26
No Yes Sorghum bicolor Sorghum 19 19
No Yes Musa balbisiana Balbis banana 44 44
No Yes Musa acuminata 22 Wild Malaysian banana 30 30
No Yes Amborella trichopoda 22   9 9
No Yes Physcomitrella patens   19 19
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella vulgaris   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   2 2
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 24 24
No Yes Hordeum vulgare 22 Domesticated barley 9 9
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 22 22
No Yes Picea sitchensis (Incomplete) Sitka spruce 3 3
No Yes Lotus japonicus (Early assembly)   27 27
No Yes Malus x domestica (Duplicate) Apple 56 56
No Yes Ricinus communis (Early assembly) Castor bean 25 25
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   60 58
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 37 37
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 37 37
No Yes Phoenix dactylifera (Early draft) Date palm 3 3
No Yes Arabidopsis thaliana 10 Thale cress 25 25
No Yes NCBI 2017_08 genome   2887 2885
No Yes STRING v9.0.5 (STRING)   221 220
No Yes Uniprot 2018_03 genome   3445 3439
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   4 4
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   9 9
No Yes TargetDB (Targets)   1 1

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