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Chitinase insertion domain family domain assignments
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PDB chains (SCOP 1.75)

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PDB chains (SCOP 1.75) (PDB) has 39 significant domains in 39 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1ctnA   1.58e-21   0.00000567   421-493   1edq A:444-516  
1d2kA   5.13e-19   0.0000176   258-319   1d2k A:293-354  
1e6pA   2.24e-24   0.00000162   292-379   1e15 A:292-379  
1e6zA   2.24e-24   0.00000162   291-378   1e15 A:292-379  
1edqA   1.58e-21   0.00000567   421-493   1edq A:444-516  
1ehnA   1.58e-21   0.00000567   421-493   1edq A:444-516  
1eibA   1.58e-21   0.00000567   421-493   1edq A:444-516  
1ffrA   1.58e-21   0.00000567   421-493   1edq A:444-516  
1goiA   2.24e-24   0.00000162   292-379   1e15 A:292-379  
1guvA   2.48e-23   0.0000103   246-313   1lg2 A:267-334  
1h0iA   2.24e-24   0.00000162   292-379   1e15 A:292-379  
1hjxA   2.82e-24   0.0000114   240-307   1hjx A:261-328  
1hkkA   2.48e-23   0.0000103   246-313   1lg2 A:267-334  
1hkmA   2.48e-23   0.0000103   246-313   1lg2 A:267-334  
1itxA   4.18e-22   0.00000541   306-377   1itx A:338-409  
1jndA   3.87e-29   0.0000017   279-370   1jnd A:279-370  
1k9tA   1.58e-21   0.00000567   421-493   1edq A:444-516  
1kfwA   0.000000000000591   0.0000119   319-379   1kfw A:328-388  
1lg2A   2.48e-23   0.0000103   246-313   1lg2 A:267-334  
1ljyA   3.25e-24   0.0000102   239-306   1ljy A:240-307  
1ll6A   5.13e-19   0.0000176   258-319   1d2k A:293-354  
1ll7A   5.13e-19   0.0000176   258-319   1d2k A:293-354  
1nh6A   9.46e-22   0.00000621   421-493   1edq A:444-516  
1o6iA   2.24e-24   0.00000162   292-379   1e15 A:292-379  
1ogbA   2.24e-24   0.00000162   292-379   1e15 A:292-379  
1owqA   5.47e-24   0.0000112   240-307   1owq A:240-307  
1sytA   3.25e-24   0.0000102   239-306   1ljy A:240-307  
1ur9A   2.24e-24   0.00000162   292-379   1e15 A:292-379  
1vf8A   5.13e-25   0.00000753   246-315   1e9l A:267-336  
1w9pA   4.27e-21   0.0000155   299-360   1w9p A:299-360  
1wb0A   3.42e-23   0.0000103   246-313   1lg2 A:267-334  
1wnoA   3.67e-21   0.0000155   261-322   1w9p A:299-360  
1x6lA   9.46e-22   0.00000621   444-516   1edq A:444-516  
1xrvA   5.55e-24   0.0000121   240-307   1xrv A:240-307  
2dpeA   3.5e-24   0.0000121   239-306   1ljy A:240-307  
2dt1A   2.73e-24   0.0000125   240-307   1tfv A:240-307  
2escA   3.42e-24   0.0000138   239-306   1owq A:240-307  
2o9oA   9.4e-23   0.00000946   240-307   1tfv A:240-307  
2pi6A   2.31e-24   0.0000127   240-307   1tfv A:240-307  

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Select to display   Genome       Domains   Proteins
No Yes ALL   8518 8518
No Yes Homo sapiens 76_38 Human 18 18
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 3 3
No Yes Gorilla gorilla 76_3.1 Western gorilla 6 6
No Yes Pongo abelii 76_2 Sumatran orangutan 5 5
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 4 4
No Yes Papio anubis 76 Olive baboon 5 5
No Yes Macaca mulatta 76_1 Rhesus monkey 9 9
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 10 10
No Yes Otolemur garnettii 76_3 Small-eared galago 7 7
No Yes Microcebus murinus 76_1 Gray mouse lemur 3 3
No Yes Rattus norvegicus 76_5.0 Norway rat 6 6
No Yes Mus musculus 76_38 House mouse 12 12
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 4 4
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 4 4
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 2 2
No Yes Cavia porcellus 76_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 76_2 Rabbit 3 3
No Yes Ochotona princeps 76 American pika 1 1
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 4 4
No Yes Bos taurus 76_3.1 Cattle 3 3
No Yes Ovis aries 76_3.1 Sheep 3 3
No Yes Vicugna pacos 76_1 Alpaca 3 3
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 3 3
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 76_1 Giant panda 2 2
No Yes Canis familiaris 76_3.1 Dog 2 2
No Yes Felis catus 76_6.2 Domestic cat 4 3
No Yes Equus caballus 76_2 Horse 2 2
No Yes Myotis lucifugus 76_2.0 Little brown bat 4 4
No Yes Erinaceus europaeus 76 Western European hedgehog 2 2
No Yes Procavia capensis 76_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 76_3 African savanna elephant 4 4
No Yes Echinops telfairi 76 Small Madagascar hedgehog 3 3
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 5 4
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 2 2
No Yes Macropus eugenii 76_1.0 Tammar wallaby 3 3
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 6 6
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 6 6
No Yes Ornithorhynchus anatinus 76_5 Platypus 3 3
No Yes Meleagris gallopavo 76_2 Turkey 2 2
No Yes Gallus gallus 76_4 Chicken 2 2
No Yes Anas platyrhynchos 76_1.0 Mallard 4 4
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 4 4
No Yes Anolis carolinensis 76_2.0 Green anole 4 4
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 3 3
No Yes Latimeria chalumnae 76_1 Coelacanth 3 3
No Yes Lepisosteus oculatus 76 Spotted gar 1 1
No Yes Gadus morhua 76_1 Atlantic cod 1 1
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 2 2
No Yes Astyanax mexicanus 76 Mexican tetra 2 2
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Lucilia cuprina Australian sheep blowfly 3 2
No Yes Drosophila grimshawi 1.3   6 6
No Yes Drosophila willistoni 1.3   4 4
No Yes Drosophila pseudoobscura 2.13   4 4
No Yes Drosophila persimilis 1.3   4 4
No Yes Drosophila suzukii   5 3
No Yes Drosophila yakuba 1.3   4 4
No Yes Drosophila simulans 1.3   3 3
No Yes Drosophila sechellia 1.3   5 5
No Yes Drosophila melanogaster 76_5 Fruit fly 10 10
No Yes Drosophila erecta 1.3   4 4
No Yes Drosophila ananassae 1.3   4 4
No Yes Drosophila virilis 1.2   4 4
No Yes Drosophila mojavensis 1.3   5 5
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 2
No Yes Anopheles darlingi 22 American malaria mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 2 2
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 1 1
No Yes Cochliobolus lunatus m118 v2.0   1 1
No Yes Septoria musiva v1.0   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Uncinocarpus reesii 1704   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus fumigatus Af293   2 2
No Yes Aspergillus brasiliensis v1.0   2 2
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Neosartorya fischeri NRRL 181   2 2
No Yes Aspergillus terreus NIH2624   2 2
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus niger 22   2 2
No Yes Aspergillus niger ATCC 1015   1 1
No Yes Aspergillus clavatus NRRL 1   2 2
No Yes Brevibacillus brevis NBRC 100599   1 1
No Yes Paenibacillus sp. JDR-2   1 1
No Yes Bacillus atrophaeus 1942   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus halodurans C-125   1 1
No Yes Bacillus weihenstephanensis KBAB4   1 1
No Yes Bacillus thuringiensis str. Al Hakam   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Bacillus clausii KSM-K16   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Saccharophagus degradans 2-40   1 1
No Yes Aeromonas veronii B565   2 2
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   1 1
No Yes Ferrimonas balearica DSM 9799   1 1
No Yes Shewanella piezotolerans WP3   1 1
No Yes Shewanella denitrificans OS217   1 1
No Yes Shewanella baltica OS185   1 1
No Yes Shewanella woodyi ATCC 51908   1 1
No Yes Shewanella sp. MR-4   1 1
No Yes Shewanella violacea DSS12   1 1
No Yes Providencia stuartii MRSN 2154   1 1
No Yes Rahnella sp. Y9602   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   1 1
No Yes Serratia sp. AS12   2 2
No Yes Serratia plymuthica AS9   2 2
No Yes Serratia proteamaculans 568   2 2
No Yes Enterobacter asburiae LF7a   1 1
No Yes Enterobacter cloacae subsp. dissolvens SDM   1 1
No Yes Citrobacter koseri ATCC BAA-895   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 8 8
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 8 8
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 2
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Histoplasma capsulatum H143   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Paenibacillus sp. Y412MC10   1 1
No Yes Paenibacillus mucilaginosus KNP414   1 1
No Yes Paenibacillus mucilaginosus K02   1 1
No Yes Bacillus licheniformis 9945A   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus cereus subsp. cytotoxis NVH 391-98   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis MC28   1 1
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   1 1
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Bacillus cereus FRI-35   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Aeromonas hydrophila ML09-119   1 1
No Yes Shewanella sp. ANA-3   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS678   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Shewanella baltica OS223   1 1
No Yes Shewanella baltica OS195   1 1
No Yes Shewanella baltica OS155   1 1
No Yes Shewanella sp. MR-7   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Serratia sp. AS13   2 2
No Yes Serratia plymuthica S13   2 2
No Yes Serratia plymuthica 4Rx13   2 2
No Yes Serratia marcescens WW4   2 2
No Yes Serratia liquefaciens ATCC 27592   2 2
No Yes Enterobacter cloacae SCF1   1 1
No Yes Enterobacter cloacae EcWSU1   1 1
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   1 1
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 19 19
No Yes Homo sapiens (NCBI version) Human 7 7
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 7 7
No Yes Heliconius numata (Incomplete)   4 3
No Yes Homo sapiens 69_37 Human 4 4
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 3 3
No Yes Gorilla gorilla 69_3.1 Western gorilla 4 4
No Yes Pongo abelii 69_2 Sumatran orangutan 5 5
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 4 4
No Yes Macaca mulatta 69_1 Rhesus monkey 3 3
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 5 5
No Yes Otolemur garnettii 69_3 Small-eared galago 6 6
No Yes Microcebus murinus 69_1 Gray mouse lemur 3 3
No Yes Rattus norvegicus 69_3.4 Norway rat 7 7
No Yes Mus musculus 69_38 House mouse 7 7
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 4 4
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 3 3
No Yes Cavia porcellus 69_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 69_2 Rabbit 3 3
No Yes Ochotona princeps 69 American pika 1 1
No Yes Tupaia belangeri 69 Northern tree shrew 1 1
No Yes Sus scrofa 69_10.2 Pig 4 4
No Yes Bos taurus 69_3.1 Cattle 3 3
No Yes Vicugna pacos 69_1 Alpaca 3 3
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 3 3
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 2
No Yes Ailuropoda melanoleuca 69_1 Giant panda 2 2
No Yes Canis familiaris 69_3.1 Dog 2 2
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 2 2
No Yes Myotis lucifugus 69_2.0 Little brown bat 4 4
No Yes Erinaceus europaeus 69 Western European hedgehog 2 2
No Yes Procavia capensis 69_1 Cape rock hyrax 2 2
No Yes Loxodonta africana 69_3 African savanna elephant 4 4
No Yes Echinops telfairi 69 Small Madagascar hedgehog 3 3
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 3 3
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 2 2
No Yes Macropus eugenii 69_1.0 Tammar wallaby 3 3
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 6 6
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 6 6
No Yes Ornithorhynchus anatinus 69_5 Platypus 3 3
No Yes Meleagris gallopavo 69_2 Turkey 1 1
No Yes Gallus gallus 69_2 Chicken 3 3
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 3 3
No Yes Anolis carolinensis 69_2.0 Green anole 3 3
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 2
No Yes Latimeria chalumnae 69_1 Coelacanth 2 2
No Yes Gadus morhua 69_1 Atlantic cod 1 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 1 1
No Yes Drosophila melanogaster 69_5 Fruit fly 5 5
No Yes 5_050719P (meta-genome)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   2 2
No Yes Combined (meta-genome)   3 3
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   3 3
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   4 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   4 4
No Yes NCBI 2017_08 genome   4519 4512
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   155 155
No Yes Uniprot 2018_03 genome   1874 1858
No Yes Global Ocean Sampling Expedition (GOS)   3 3
No Yes NCBI viral sequences (Viral)   19 19
No Yes PDB chains (SCOP 1.75) (PDB)   39 39
No Yes Protein Data Bank (all PDB sequenc)   256 256
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   651 651
No Yes TargetDB (Targets)   2 2
No Yes UniProt viral sequences (Viral)   21 21

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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