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Vanillyl-alcohol oxidase-like family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 11 significant domains in 11 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1ahvA   1.77e-38   0.0000000181   276-555   1e8g A:274-560  
1diqA   1.27e-50   0.00000000347   245-515   1diq A:243-521  
1dznA   1.32e-38   0.0000000169   275-555   1e8g A:274-560  
1e0yA   1.61e-38   0.0000000187   275-555   1e8g A:274-560  
1e8gA   1.32e-38   0.0000000169   275-555   1e8g A:274-560  
1qltA   2.58e-38   0.0000000169   275-555   1e8g A:274-560  
1w1jA   3.87e-38   0.0000000181   276-555   1e8g A:274-560  
1w1kA   1.77e-38   0.0000000181   276-555   1e8g A:274-560  
1w1lA   7.25e-39   0.0000000196   276-555   1e8g A:274-560  
1w1mA   4.67e-38   0.0000000181   276-555   1e8g A:274-560  
1wvfA   1.27e-50   0.00000000347   244-514   1diq A:243-521  

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Select to display   Genome       Domains   Proteins
No Yes ALL   2114 2114
No Yes Sphaerobolus stellatus v1.0   3 3
No Yes Gloeophyllum trabeumv1.0   3 3
No Yes Daldinia eschscholzii EC12 v1.0   2 2
No Yes Thielavia terrestris NRRL 8126   3 3
No Yes Cryphonectria parasitica Chestnut blight fungus 2 2
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Glomerella graminicola 22   1 1
No Yes Nectria haematococca mpVI   3 3
No Yes Fusarium oxysporum f. sp. lycopersici 4286   1 1
No Yes Fusarium verticillioides 7600   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 2 2
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Dothistroma septosporum   1 1
No Yes Septoria musiva v1.0   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus sydowii v1.0   3 3
No Yes Aspergillus versicolor v1.0   3 3
No Yes Aspergillus glaucus   2 2
No Yes Aspergillus wentii v1.0   2 2
No Yes Penicillium marneffei ATCC 18224   3 3
No Yes Modestobacter marinus   1 1
No Yes Actinoplanes sp. N902-109   1 1
No Yes Rhodococcus jostii RHA1   1 1
No Yes Candidatus Nitrospira defluvii   1 1
No Yes Sulfuricurvum kujiense DSM 16994   1 1
No Yes Geobacter daltonii FRC-32   2 2
No Yes Geobacter sp. M21   2 2
No Yes Geobacter metallireducens GS-15   2 2
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Thauera sp. MZ1T   1 1
No Yes Azoarcus sp. KH32C   1 1
No Yes Aromatoleum aromaticum EbN1   4 4
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Comamonas testosteroni CNB-2   1 1
No Yes Achromobacter xylosoxidans A8   1 1
No Yes Nitrosospira multiformis ATCC 25196   1 1
No Yes Nitrosomonas eutropha C91   1 1
No Yes Nitrosomonas europaea ATCC 19718   1 1
No Yes Novosphingobium sp. PP1Y   3 3
No Yes Novosphingobium aromaticivorans DSM 12444   6 6
No Yes Sphingobium sp. SYK-6   3 3
No Yes Oceanimonas sp. GK1   1 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Nitrosococcus oceani ATCC 19707   1 1
No Yes Cycloclasticus sp. P1   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Burkholderia sp. YI23   1 1
No Yes Burkholderia sp. CCGE1003   1 1
No Yes Burkholderia sp. CCGE1001   1 1
No Yes Nitrosomonas sp. AL212   1 1
No Yes Thioflavicoccus mobilis 8321   1 1
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas putida H8234   1 1
No Yes Cycloclasticus zancles 7-ME   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   776 776
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   3 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   32 32
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   910 910
No Yes Global Ocean Sampling Expedition (GOS)   3 3
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   11 11
No Yes Protein Data Bank (all PDB sequenc)   43 43
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   141 141

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