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Origin of replication-binding domain, RBD-like superfamily domain assignments
in
all bacterial and archaeal genomes

Assignment details

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25 selected genomes have 39 significant domains in 39 proteins.

Showing genomes 101 to 125 of 259
First Previous   5 6 7 8 9 10 11   Next Last

Azospirillum lipoferum 4B has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|374998134|ref|YP_004973633.1|   5.95e-47   25-309   Relaxase domain  

Gluconacetobacter xylinus NBRC 3288 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|347626502|ref|YP_004857969.1|   5.04e-35   229-360,389-531   Relaxase domain  
gi|347822738|ref|YP_004869784.1|   7.32e-42   1-347   Relaxase domain  

Granulibacter bethesdensis CGDNIH1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|114328178|ref|YP_745335.1|   3.07e-84   1-270   Relaxase domain  

Gluconacetobacter diazotrophicus PAl 5 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|162147374|ref|YP_001601835.1|   2.56e-51   39-315   Relaxase domain  

Acidiphilium multivorum AIU301 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|325113166|ref|YP_004277112.1|   1.14e-39   679-961   Relaxase domain  
gi|325113302|ref|YP_004277247.1|   6.87e-67   49-324   Relaxase domain  
gi|325168966|ref|YP_004285713.1|   2.24e-39   670-961   Relaxase domain  

Acidiphilium cryptum JF-5 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|148243748|ref|YP_001219988.1|   5.04e-39   653-943   Relaxase domain  
gi|148244046|ref|YP_001220284.1|   1.14e-39   661-943   Relaxase domain  
gi|148244089|ref|YP_001220325.1|   2.24e-39   671-961   Relaxase domain  
gi|148244119|ref|YP_001220354.1|   2.38e-25   34-240   Relaxase domain  
gi|148261410|ref|YP_001235537.1|   2.2e-90   2-289   Relaxase domain  

Gluconobacter oxydans 621H has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|58038393|ref|YP_190362.1|   5.95e-56   1-353   Relaxase domain  

Acetobacter pasteurianus IFO 3283-01 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|258512946|ref|YP_003189203.1|   1.92e-18   1-184   Relaxase domain  
gi|258513178|ref|YP_003189434.1|   1.6e-21   5-146   Relaxase domain  

Candidatus Puniceispirillum marinum IMCC1322 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|294085318|ref|YP_003552078.1|   5.49e-74   2-304   Relaxase domain  

Methylobacterium extorquens AM1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|240138514|ref|YP_002962986.1|   5.49e-50   2-232   Relaxase domain  

Methylobacterium radiotolerans JCM 2831 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|170745567|ref|YP_001776789.1|   1.01e-69   2-306   Relaxase domain  

Beijerinckia indica subsp. indica ATCC 9039 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|182676841|ref|YP_001830988.1|   4.58e-45   46-348   Relaxase domain  

Aeromonas salmonicida subsp. salmonicida A449 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|145301426|ref|YP_001144265.1|   4.3e-86   3-310   Relaxase domain  
gi|145301506|ref|YP_001144345.1|   5.49e-88   7-295   Relaxase domain  

Aliivibrio salmonicida LFI1238 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|215778371|ref|YP_002261511.1|   4.58e-76   1-331   Relaxase domain  
 
Weak hits:
gi|209693727|ref|YP_002261655.1|   0.0302   20-64   Replication protein Rep, nuclease domain  

Photobacterium profundum SS9 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|47104047|ref|YP_015476.1|   4.53e-83   1-334   Relaxase domain  
 
Weak hits:
gi|54302551|ref|YP_132544.1|   0.0449   130-198   Relaxase domain  
gi|54303071|ref|YP_133064.1|   0.0458   130-198   Relaxase domain  
gi|54303360|ref|YP_133353.1|   0.0449   130-198   Relaxase domain  
gi|54308528|ref|YP_129548.1|   0.0595   130-198   Relaxase domain  
gi|54308886|ref|YP_129906.1|   0.0595   130-198   Relaxase domain  
gi|54309880|ref|YP_130900.1|   0.0476   218-319   Relaxase domain  

Shewanella baltica OS185 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|152998526|ref|YP_001355447.1|   1.97e-77   1-326   Relaxase domain  
gi|153000210|ref|YP_001365891.1|   0.0000137   93-205   Relaxase domain  
gi|153001714|ref|YP_001367395.1|   0.0000124   93-204   Relaxase domain  
 
Weak hits:
gi|153000220|ref|YP_001365901.1|   0.0279   137-196   Relaxase domain  

Shewanella putrefaciens CN-32 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|146292725|ref|YP_001183149.1|   0.00000375   93-204   Relaxase domain  

Methylomonas methanica MC09 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|333984157|ref|YP_004513367.1|   0.0000247   94-218   Relaxase domain  

Stenotrophomonas maltophilia K279a has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|190574948|ref|YP_001972793.1|   2.11e-46   16-74,103-316   Relaxase domain  

Xanthomonas axonopodis pv. citri str. 306 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|21264259|ref|NP_644759.1|   4.21e-94   3-291   Relaxase domain  

Xanthomonas albilineans GPE PC73 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386081579|ref|YP_005994941.1|   1.65e-85   2-294   Relaxase domain  
gi|386081659|ref|YP_005994966.1|   1.1e-85   6-292   Relaxase domain  
 
Weak hits:
gi|386076364|ref|YP_005994896.1|   0.022   23-144   Relaxase domain  

Halothiobacillus neapolitanus c2 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|261855549|ref|YP_003262832.1|   4.07e-66   22-297   Relaxase domain  

Legionella longbeachae NSW150 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|289165168|ref|YP_003455306.1|   3.66e-84   1-299   Relaxase domain  
gi|308051536|ref|YP_003915110.1|   3.52e-88   1-315   Relaxase domain  

Yersinia pestis Pestoides F has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|145597289|ref|YP_001154759.1|   2.2e-103   1-302   Relaxase domain  

Pantoea sp. At-9b has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|317052866|ref|YP_004119632.1|   3.39e-80   1-274   Relaxase domain  
gi|317053481|ref|YP_004118615.1|   2.84e-80   1-274   Relaxase domain  

First Previous   5 6 7 8 9 10 11   Next Last
Showing genomes 101 to 125 of 259

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Select to display   Genome       Domains   Proteins
No Yes ALL   38733 38733
No Yes Sarcoptes scabiei   1 1
No Yes Serpula lacrymans var. lacrymans S7.9   2 2
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Entamoeba invadens 1.2   3 3
No Yes Malus domestica v196 Apple 2 2
No Yes Perkinsus marinus ATCC 50983   2 2
No Yes Acaryochloris marina MBIC11017   9 9
No Yes Nostoc punctiforme PCC 73102   2 2
No Yes Nostoc sp. PCC 7120   1 1
No Yes Aster yellows witches'-broom phytoplasma AYWB   5 5
No Yes Conexibacter woesei DSM 14684   1 1
No Yes Acidimicrobium ferrooxidans DSM 10331   1 1
No Yes Nakamurella multipartita DSM 44233   1 1
No Yes Modestobacter marinus   5 5
No Yes Blastococcus saxobsidens DD2   12 12
No Yes Geodermatophilus obscurus DSM 43160   5 5
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Stackebrandtia nassauensis DSM 44728   2 2
No Yes Frankia sp. EAN1pec   1 1
No Yes Frankia alni ACN14a   1 1
No Yes Streptomyces sp. PAMC26508   2 2
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   6 6
No Yes Pseudonocardia dioxanivorans CB1190   2 2
No Yes Kribbella flavida DSM 17836   2 1
No Yes Nocardioides sp. JS614   6 6
No Yes Microlunatus phosphovorus NM-1   1 1
No Yes Tsukamurella paurometabola DSM 20162   2 2
No Yes Gordonia sp. KTR9   1 1
No Yes Gordonia bronchialis DSM 43247   1 1
No Yes Rhodococcus erythropolis PR4   1 1
No Yes Nocardia cyriacigeorgica GUH-2   1 1
No Yes Amycolicicoccus subflavus DQS3-9A1   3 3
No Yes Mycobacterium abscessus ATCC 19977   1 1
No Yes Mycobacterium vanbaalenii PYR-1   2 2
No Yes Mycobacterium gilvum PYR-GCK   3 3
No Yes Mycobacterium chubuense NBB4   5 5
No Yes Mycobacterium marinum M   2 2
No Yes Corynebacterium resistens DSM 45100   1 1
No Yes Corynebacterium aurimucosum ATCC 700975   1 1
No Yes Corynebacterium efficiens YS-314   2 2
No Yes Corynebacterium variabile DSM 44702   1 1
No Yes Kytococcus sedentarius DSM 20547   2 2
No Yes Clavibacter michiganensis subsp. michiganensis NCPPB 382   2 2
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   2 2
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   1 1
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter aurescens TC1   4 4
No Yes Arthrobacter arilaitensis Re117   1 1
No Yes Arthrobacter sp. Rue61a   2 2
No Yes Micrococcus luteus NCTC 2665   1 1
No Yes Bifidobacterium dentium Bd1   1 1
No Yes Veillonella parvula DSM 2008   1 1
No Yes Selenomonas ruminantium subsp. lactilytica TAM6421   1 1
No Yes Sulfobacillus acidophilus DSM 10332   1 1
No Yes Niastella koreensis GR20-10   2 2
No Yes Chitinophaga pinensis DSM 2588   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Opitutus terrae PB90-1   3 3
No Yes Granulicella tundricola MP5ACTX9   4 4
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Terriglobus saanensis SP1PR4   3 3
No Yes Terriglobus roseus DSM 18391   1 1
No Yes Acidobacterium capsulatum ATCC 51196   4 4
No Yes Thermodesulfovibrio yellowstonii DSM 11347   1 1
No Yes Leptospirillum ferrooxidans C2-3   1 1
No Yes Acidithiobacillus ferrivorans SS3   1 1
No Yes Acidithiobacillus caldus SM-1   1 1
No Yes Sulfurospirillum barnesii SES-3   1 1
No Yes Sulfurimonas denitrificans DSM 1251   1 1
No Yes Nitratiruptor sp. SB155-2   1 1
No Yes Desulfobulbus propionicus DSM 2032   1 1
No Yes Geobacter sp. M21   1 1
No Yes Anaeromyxobacter dehalogenans 2CP-1   1 1
No Yes beta proteobacterium CB   1 1
No Yes Thiomonas arsenitoxydans   1 1
No Yes Thiomonas intermedia K12   1 1
No Yes Burkholderia rhizoxinica HKI 454   1 1
No Yes Burkholderia phytofirmans PsJN   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   2 2
No Yes Burkholderia gladioli BSR3   2 2
No Yes Burkholderia glumae BGR1   3 3
No Yes Alicycliphilus denitrificans K601   1 1
No Yes Delftia sp. Cs1-4   1 1
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. JS42   1 1
No Yes Pusillimonas sp. T7-7   2 2
No Yes Bordetella petrii DSM 12804   1 1
No Yes Thiobacillus denitrificans ATCC 25259   2 2
No Yes Methylovorus glucosetrophus SIP3-4   1 1
No Yes Parvularcula bermudensis HTCC2503   1 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Caulobacter crescentus NA1000   1 1
No Yes Erythrobacter litoralis HTCC2594   3 3
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Novosphingobium sp. PP1Y   3 3
No Yes Novosphingobium aromaticivorans DSM 12444   2 2
No Yes Sphingobium japonicum UT26S   1 1
No Yes Sphingobium chlorophenolicum L-1   1 1
No Yes Sphingomonas sp. MM-1   1 1
No Yes Sphingomonas wittichii RW1   2 2
No Yes Azospirillum lipoferum 4B   1 1
No Yes Gluconacetobacter xylinus NBRC 3288   2 2
No Yes Granulibacter bethesdensis CGDNIH1   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Acidiphilium multivorum AIU301   3 3
No Yes Acidiphilium cryptum JF-5   5 5
No Yes Gluconobacter oxydans 621H   1 1
No Yes Acetobacter pasteurianus IFO 3283-01   2 2
No Yes Candidatus Puniceispirillum marinum IMCC1322   1 1
No Yes Methylobacterium extorquens AM1   1 1
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Aeromonas salmonicida subsp. salmonicida A449   2 2
No Yes Aliivibrio salmonicida LFI1238   1 1
No Yes Photobacterium profundum SS9   1 1
No Yes Shewanella oneidensis MR-1   4 4
No Yes Shewanella baltica OS185   3 3
No Yes Shewanella putrefaciens CN-32   1 1
No Yes Methylomonas methanica MC09   1 1
No Yes Stenotrophomonas maltophilia K279a   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas albilineans GPE PC73   2 2
No Yes Halothiobacillus neapolitanus c2   1 1
No Yes Legionella longbeachae NSW150   2 2
No Yes Yersinia pestis Pestoides F   1 1
No Yes Pantoea sp. At-9b   2 2
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia billingiae Eb661   1 1
No Yes Shigella sonnei Ss046   1 1
No Yes Shigella dysenteriae Sd197   2 2
No Yes Klebsiella oxytoca E718   1 1
No Yes Enterobacter sp. R4-368   1 1
No Yes Enterobacter sp. 638   1 1
No Yes Enterobacter asburiae LF7a   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Chamaesiphon minutus PCC 6605   2 2
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Cyanothece sp. PCC 7822   2 2
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Cyanothece sp. ATCC 51142   2 2
No Yes Frankia sp. EuI1c   1 1
No Yes Frankia sp. CcI3   1 1
No Yes Streptomyces davawensis JCM 4913   1 1
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   5 5
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Propionibacterium acnes KPA171202   3 3
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Mycobacterium abscessus subsp. bolletii 50594   2 2
No Yes Mycobacterium liflandii 128FXT   1 1
No Yes Mycobacterium sp. KMS   2 2
No Yes Mycobacterium sp. MCS   1 1
No Yes Mycobacterium yongonense 05-1390   1 1
No Yes Mycobacterium gilvum Spyr1   2 2
No Yes Mycobacterium kansasii ATCC 12478   1 1
No Yes Corynebacterium maris DSM 45190   1 1
No Yes Corynebacterium halotolerans YIM 70093 = DSM 44683   1 1
No Yes Corynebacterium callunae DSM 20147   2 2
No Yes Corynebacterium diphtheriae CDCE 8392   1 1
No Yes Leifsonia xyli subsp. cynodontis DSM 46306   1 1
No Yes Bifidobacterium longum subsp. longum F8   1 1
No Yes Bifidobacterium thermophilum RBL67   1 1
No Yes Sulfobacillus acidophilus TPY   1 1
No Yes Rhodothermus marinus SG0.5JP17-172   2 2
No Yes Singulisphaera acidiphila DSM 18658   1 1
No Yes Leptospirillum ferriphilum ML-04   4 4
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Burkholderia sp. YI23   2 2
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Gluconobacter oxydans H24   3 3
No Yes Acetobacter pasteurianus 386B   1 1
No Yes Acetobacter pasteurianus IFO 3283-12   2 2
No Yes Acetobacter pasteurianus IFO 3283-01-42C   2 2
No Yes Acetobacter pasteurianus IFO 3283-32   2 2
No Yes Acetobacter pasteurianus IFO 3283-26   2 2
No Yes Acetobacter pasteurianus IFO 3283-22   2 2
No Yes Acetobacter pasteurianus IFO 3283-07   2 2
No Yes Acetobacter pasteurianus IFO 3283-03   2 2
No Yes Methylobacterium extorquens DM4   1 1
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Bradyrhizobium sp. BTAi1   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Vibrio vulnificus CMCP6   1 1
No Yes Vibrio vulnificus YJ016   1 1
No Yes Shewanella sp. W3-18-1   2 2
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS678   5 5
No Yes Shewanella baltica OS223   4 4
No Yes Shewanella baltica OS195   6 6
No Yes Shewanella sp. MR-7   1 1
No Yes Shewanella putrefaciens 200   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Legionella pneumophila str. Paris   1 1
No Yes Legionella pneumophila str. Lens   1 1
No Yes Legionella pneumophila subsp. pneumophila LPE509   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   1 1
No Yes Rahnella aquatilis HX2   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Shigella sonnei 53G   1 1
No Yes Shigella flexneri 2002017   2 2
No Yes Shigella flexneri 2a str. 301   2 2
No Yes Shigella dysenteriae 1617   2 2
No Yes Shigella boydii Sb227   2 2
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   1 1
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   1 1
No Yes Salmonella enterica serovar Bovismorbificans genomics   1 1
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   1 1
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   2 2
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2071   1 1
No Yes Escherichia coli O104:H4 str. 2011C-3493   1 1
No Yes Escherichia coli NA114   1 1
No Yes Escherichia coli UM146   1 1
No Yes Escherichia coli 042   1 1
No Yes Escherichia coli UMNK88   1 1
No Yes Escherichia coli O83:H1 str. NRG 857C   1 1
No Yes Escherichia coli UMN026   1 1
No Yes Escherichia coli S88   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE15   1 1
No Yes Escherichia coli SE11   1 1
No Yes Escherichia coli APEC O1   1 1
No Yes Escherichia coli O103:H2 str. 12009   1 1
No Yes Escherichia coli UTI89   1 1
No Yes Escherichia coli ETEC H10407   1 1
No Yes Escherichia coli O26:H11 str. 11368   1 1
No Yes Escherichia coli O111:H- str. 11128   1 1
No Yes Escherichia coli O127:H6 str. E2348/69   1 1
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   2 2
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Pseudomonas putida HB3267   1 1
No Yes Acinetobacter baumannii BJAB0868   1 1
No Yes Acinetobacter baumannii BJAB07104   1 1
No Yes Acinetobacter baumannii TCDC-AB0715   1 1
No Yes Acinetobacter baumannii MDR-TJ   1 1
No Yes Acinetobacter baumannii 1656-2   1 1
No Yes Acinetobacter baumannii ACICU   1 1
No Yes Acinetobacter johnsonii SH046   1 1
No Yes Malus x domestica (Duplicate) Apple 2 2
No Yes 1_050719N (meta-genome)   1 1
No Yes 2_050719S (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   9 9
No Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)   8 8
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   5 5
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   7 7
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   3 3
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Combined (meta-genome)   6 6
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   9 9
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   6 6
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   7 7
No Yes Dump bottom (Dump bottom) (meta-genome)   55 55
No Yes Dump top (Dump top) (meta-genome)   35 35
No Yes Endophytic microbiome from Rice (meta-genome)   8 8
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   2 2
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   11 11
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   7 7
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   13 13
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   6 6
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   10 10
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   6 6
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   16 16
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   7 7
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   3 3
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   6 6
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   3 3
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   2 2
No Yes NCBI 2017_08 genome   16956 16944
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   6 6
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   13 13
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   10 10
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   11 11
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   5 5
No Yes Sludge/US, Jazz Assembly (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   21 21
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   69 69
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   47 47
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   43 43
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   17 17
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   18 18
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   182 182
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   3 3
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   15330 15321
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   4 4
No Yes Global Ocean Sampling Expedition (GOS)   36 36
No Yes NCBI plasmid sequences (Plasmids)   420 420
No Yes NCBI viral sequences (Viral)   599 599
No Yes PDB chains (SCOP 1.75) (PDB)   10 10
No Yes Protein Data Bank (all PDB sequenc)   114 114
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   244 244
No Yes TargetDB (Targets)   4 4
No Yes The Salmonella enterica Pan-genome (meta-genome)   6 6
No Yes UniProt viral sequences (Viral)   3689 3689

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