SUPERFAMILY 1.75 HMM library and genome assignments server

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PYP-like family domain assignments
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PDB chains (SCOP 1.75)

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PDB chains (SCOP 1.75) (PDB) has 12 significant domains in 12 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1d7eA   1.08e-20   0.0000021   19-119   1nwz A:  
1f98A   4.84e-20   0.00000226   22-122   1nwz A:  
1f9iA   1.02e-20   0.00000229   22-122   1nwz A:  
1gsvA   5.13e-21   0.00000232   22-122   1nwz A:  
1gswA   2e-19   0.0000021   22-122   1nwz A:  
1gsxA   9.99e-20   0.00000232   22-122   1nwz A:  
1mzuA   7.95e-20   0.00000543   25-115   1mzu A:  
1nwzA   1.05e-20   0.0000021   22-122   1nwz A:  
1odvA   6.75e-20   0.00000301   2-97   1nwz A:  
1ot6A   1.73e-20   0.00000219   22-122   1nwz A:  
1otdA   1.65e-21   0.00000283   20-122   1otd A:  
1xfnA   4.62e-20   0.00000284   13-110   1nwz A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   470 470
No Yes Rhodospirillum centenum SW   1 1
No Yes Idiomarina loihiensis L2TR   1 1
No Yes Methylomicrobium alcaliphilum   1 1
No Yes Halorhodospira halophila SL1   2 2
No Yes Idiomarina loihiensis GSL 199   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes NCBI 2017_08 genome   72 72
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   4 4
No Yes Uniprot 2018_03 genome   73 73
No Yes PDB chains (SCOP 1.75) (PDB)   12 12
No Yes Protein Data Bank (all PDB sequenc)   75 75
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   218 218

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