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  Home > Genomes > Ribosome inactivating proteins (RIP) domains in all bacterial genomes


Ribosome inactivating proteins (RIP) superfamily domain assignments
in
all bacterial genomes

Network of domain occurrence in all genomes

Assignment details

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25 selected genomes have 26 significant domains in 26 proteins.

Showing genomes 1 to 25 of 38
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Streptomyces coelicolor A3(2) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|21225374|ref|NP_631153.1|   6.03e-48   48-296   Plant cytotoxins  

Streptomyces scabiei 87.22 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|290954890|ref|YP_003486072.1|   1.28e-25   60-261   Shiga toxin, A-chain  
gi|290963100|ref|YP_003494282.1|   9.43e-40   30-269   Shiga toxin, A-chain  
 
Weak hits:
gi|290954856|ref|YP_003486038.1|   0.0115   108-171   Plant cytotoxins  

Melioribacter roseus P3M has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|397691830|ref|YP_006529084.1|   0.000039   300-399   Plant cytotoxins  
 
Weak hits:
gi|397691062|ref|YP_006528316.1|   0.00363   56-170   Plant cytotoxins  

Flavobacterium columnare ATCC 49512 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|365961283|ref|YP_004942850.1|   0.00000000000000327   51-229   Shiga toxin, A-chain  

Burkholderia sp. CCGE1002 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|295701322|ref|YP_003610323.1|   8.78e-36   24-278   Shiga toxin, A-chain  

Xanthomonas axonopodis pv. citri str. 306 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|21242363|ref|NP_641945.1|   0.0000253   6-125   Plant cytotoxins  
 
Weak hits:
gi|21244853|ref|NP_644435.1|   0.0602   538-607   Plant cytotoxins  

Shigella dysenteriae Sd197 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|82776676|ref|YP_403025.1|   1.57e-78   24-307   Shiga toxin, A-chain  

Oscillatoria nigro-viridis PCC 7112 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|428316090|ref|YP_007113972.1|   0.000000000603   1062-1236   Plant cytotoxins  

Calothrix parietina Calothrix sp. PCC 6303 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|428298822|ref|YP_007137128.1|   1.7e-24   88-295   Shiga toxin, A-chain  

Corynebacterium ulcerans 809 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|384514719|ref|YP_005709811.1|   7.99e-21   62-265   Plant cytotoxins  

Corynebacterium diphtheriae BH8 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|376286722|ref|YP_005159288.1|   0.000000000000589   53-160   Plant cytotoxins  

Corynebacterium diphtheriae INCA 402 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|375292136|ref|YP_005126675.1|   0.0000301   76-141   Shiga toxin, A-chain  

Corynebacterium diphtheriae VA01 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|376256165|ref|YP_005144056.1|   0.00000000301   1-67   Plant cytotoxins  

Corynebacterium diphtheriae HC04 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|376247522|ref|YP_005139466.1|   0.00000000000111   59-193   Plant cytotoxins  

Corynebacterium diphtheriae HC03 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|376250337|ref|YP_005137218.1|   0.000000000236   71-146   Plant cytotoxins  

Corynebacterium diphtheriae HC02 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|376292311|ref|YP_005163985.1|   0.000000000511   71-146   Plant cytotoxins  

Corynebacterium diphtheriae HC01 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|376244761|ref|YP_005135000.1|   0.00000000000236   53-160   Plant cytotoxins  

Corynebacterium diphtheriae 241 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|375289926|ref|YP_005124466.1|   0.00000000000236   53-160   Plant cytotoxins  

Corynebacterium diphtheriae CDCE 8392 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|376241897|ref|YP_005132749.1|   0.00000000000131   62-160   Plant cytotoxins  

Corynebacterium diphtheriae PW8 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|376253368|ref|YP_005141827.1|   0.00000000196   1-68   Plant cytotoxins  

Corynebacterium diphtheriae C7 (beta) has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|376289400|ref|YP_005161647.1|   0.00000000038   72-149   Plant cytotoxins  

Corynebacterium diphtheriae 31A has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|376283739|ref|YP_005156949.1|   0.000000000301   70-146   Plant cytotoxins  

Burkholderia ambifaria MC40-6 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|172063796|ref|YP_001811447.1|   0.0000000000021   5-194   Shiga toxin, A-chain  

Burkholderia cenocepacia J2315 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|206562017|ref|YP_002232780.1|   0.00000157   10-167   Plant cytotoxins  

Xanthomonas citri subsp. citri Aw12879 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|471268221|ref|YP_007650686.1|   0.0000253   6-125   Plant cytotoxins  
 
Weak hits:
gi|471265723|ref|YP_007648189.1|   0.0615   549-618   Plant cytotoxins  

  1 2   Next Last
Showing genomes 1 to 25 of 38

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View all assignments containing a Ribosome inactivating proteins (RIP) domain in each group of genomes.

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Add assignments from individual genomes

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Select to display   Genome       Domains   Proteins
No Yes ALL   7944 7944
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 2
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Sphaerobolus stellatus v1.0   2 2
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Magnaporthe poae ATCC 64411 22   1 1
No Yes Theobroma cacao B97-61/B2 v1 Cacao 4 4
No Yes Gossypium raimondii v221   3 3
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Malus domestica v196 Apple 9 9
No Yes Prunus persica v139 Peach 2 2
No Yes Manihot esculenta v147 Cassava 4 4
No Yes Populus trichocarpa v156 Black cottonwood 3 3
No Yes Triticum urartu 22   25 25
No Yes Triticum aestivum 22 Bread wheat 17 17
No Yes Aegilops tauschii 22   27 27
No Yes Brachypodium distachyon Stiff brome 6 6
No Yes Oryza barthii 22 African wild rice 38 36
No Yes Oryza meridionalis 22   31 30
No Yes Oryza glumaepatula 22   34 32
No Yes Oryza glaberrima African rice 21 21
No Yes Oryza punctata 22   33 30
No Yes Oryza nivara 22   36 33
No Yes Oryza brachyantha 22 Malo sina 13 13
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 39 39
No Yes Oryza sativa v193 Rice 39 39
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 4 4
No Yes Panicum virgatum v202 Switchgrass 60 60
No Yes Setaria italica v164 Foxtail millet 15 15
No Yes Zea mays subsp. mays Maize 10 10
No Yes Zea mays v181 Maize 14 14
No Yes Sorghum bicolor Sorghum 10 10
No Yes Streptomyces coelicolor A3(2)   1 1
No Yes Streptomyces scabiei 87.22   2 2
No Yes Melioribacter roseus P3M   1 1
No Yes Flavobacterium columnare ATCC 49512   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Shigella dysenteriae Sd197   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 6 6
No Yes Hordeum vulgare 22 Domesticated barley 18 18
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 43 42
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Corynebacterium ulcerans 809   1 1
No Yes Corynebacterium diphtheriae BH8   1 1
No Yes Corynebacterium diphtheriae INCA 402   1 1
No Yes Corynebacterium diphtheriae VA01   1 1
No Yes Corynebacterium diphtheriae HC04   1 1
No Yes Corynebacterium diphtheriae HC03   1 1
No Yes Corynebacterium diphtheriae HC02   1 1
No Yes Corynebacterium diphtheriae HC01   1 1
No Yes Corynebacterium diphtheriae 241   1 1
No Yes Corynebacterium diphtheriae CDCE 8392   1 1
No Yes Corynebacterium diphtheriae PW8   1 1
No Yes Corynebacterium diphtheriae C7 (beta)   1 1
No Yes Corynebacterium diphtheriae 31A   1 1
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas axonopodis Xac29-1   1 1
No Yes Shigella dysenteriae 1617   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2050   1 1
No Yes Escherichia coli O104:H4 str. 2009EL-2071   1 1
No Yes Escherichia coli O104:H4 str. 2011C-3493   1 1
No Yes Escherichia coli Xuzhou21   2 2
No Yes Escherichia coli O103:H2 str. 12009   2 2
No Yes Escherichia coli O26:H11 str. 11368   1 1
No Yes Escherichia coli O111:H- str. 11128   2 2
No Yes Escherichia coli O157:H7 str. TW14359   2 2
No Yes Escherichia coli O157:H7 str. EC4115   2 2
No Yes Escherichia coli O157:H7 str. Sakai   2 2
No Yes Escherichia coli O157:H7 str. EDL933   2 2
No Yes Malus x domestica (Duplicate) Apple 9 9
No Yes Ricinus communis (Early assembly) Castor bean 20 20
No Yes Combined (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   3398 3393
No Yes STRING v9.0.5 (STRING)   115 114
No Yes Uniprot 2018_03 genome   2164 2112
No Yes NCBI plasmid sequences (Plasmids)   1 1
No Yes NCBI viral sequences (Viral)   13 13
No Yes PDB chains (SCOP 1.75) (PDB)   45 45
No Yes Protein Data Bank (all PDB sequenc)   301 299
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1030 1030
No Yes UniProt viral sequences (Viral)   51 51

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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