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gp120 core family domain assignments
in
PDB chains (SCOP 1.75)

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PDB chains (SCOP 1.75) (PDB) has 13 significant domains in 13 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1g9mG   1.23e-169   0.00000000000547   5-321   1g9m G:  
1gc1G   1.41e-169   0.00000000000567   5-321   1g9m G:  
1yymG   7.47e-164   0.00000000000871   6-313   1g9n G:  
2b4cG   2.59e-191   0.00000000000206   7-344   2b4c G:84-492  
2nxyA   5.27e-169   0.00000000000562   1-317   1g9m G:  
2nxzA   1.89e-168   0.00000000000617   1-317   1g9m G:  
2ny0A   1.36e-165   0.00000000000793   1-317   1g9m G:  
2ny1A   7.91e-167   0.00000000000691   1-317   1g9m G:  
2ny2A   6.59e-166   0.00000000000703   1-317   1g9m G:  
2ny3A   7.03e-166   0.00000000000715   1-317   1g9m G:  
2ny4A   2.33e-166   0.00000000000715   1-317   1g9m G:  
2ny6A   4.17e-162   0.00000000000969   1-317   1g9m G:  
2ny7G   6.15e-164   0.00000000000888   1-317   1g9m G:  
 
Weak hits:
1ce4A   2.05e-17   0.00032   1-35   2b4c G:84-492  

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Select to display   Genome       Domains   Proteins
No Yes ALL   302667 302667
No Yes NCBI 2017_08 genome   5 5
No Yes Uniprot 2018_03 genome   208515 208391
No Yes NCBI viral sequences (Viral)   4 4
No Yes PDB chains (SCOP 1.75) (PDB)   13 13
No Yes Protein Data Bank (all PDB sequenc)   364 364
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   678 678
No Yes TargetDB (Targets)   1 1
No Yes UniProt viral sequences (Viral)   93082 93013

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