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  Home > Genomes > Serpins domains in all bacterial and archaeal genomes


Serpins family domain assignments
in
all bacterial and archaeal genomes

Assignment details

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25 selected genomes have 27 significant domains in 27 proteins.

Showing genomes 1 to 25 of 200
  1 2 3 4 5 6 7 8   Next Last

Microcoleus sp. PCC 7113 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|428309537|ref|YP_007120514.1|   5.11e-121   0.000000779   53-427   1hle A:,B:  
gi|428312614|ref|YP_007123591.1|   4.32e-117   0.000000836   10-418   1hle A:,B:  

Gloeocapsa sp. PCC 7428 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|434393443|ref|YP_007128390.1|   2.36e-117   0.00000114   58-432   1hle A:,B:  

Gloeobacter violaceus PCC 7421 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|37521415|ref|NP_924792.1|   2.49e-65   0.0000631   7-388   1hle A:,B:  
gi|37521539|ref|NP_924916.1|   3.53e-106   0.00000214   35-409   1hle A:,B:  

Rivularia sp. PCC 7116 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|427734012|ref|YP_007053556.1|   1.44e-120   0.00000137   45-441   1hle A:,B:  

Calothrix sp. PCC 7507 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|427719197|ref|YP_007067191.1|   3.14e-121   0.000000958   33-441   1by7 A:  

Anabaena variabilis ATCC 29413 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|75910869|ref|YP_325165.1|   2.09e-122   0.00000217   33-441   1by7 A:  

Nostoc sp. PCC 7107 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|427709513|ref|YP_007051890.1|   1.44e-118   0.00000136   34-441   1by7 A:  

Nostoc punctiforme PCC 73102 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|186681975|ref|YP_001865171.1|   2.62e-119   0.00000146   33-442   1hle A:,B:  

Nostoc sp. PCC 7120 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|17228273|ref|NP_484821.1|   3.14e-120   0.00000166   4-373   1lq8 A:,B:  

Nostoc sp. PCC 7524 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|427729322|ref|YP_007075559.1|   4.97e-120   0.00000117   33-441   1hle A:,B:  

Eggerthella sp. YY7918 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|339445529|ref|YP_004711533.1|   2.75e-86   0.0000213   44-424   1jjo A:,C:,E:  

Eggerthella lenta DSM 2243 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|257789907|ref|YP_003180513.1|   1.17e-63   0.000086   74-443   1qlp A:  

Olsenella uli DSM 7084 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|302336332|ref|YP_003801539.1|   2.88e-73   0.0000308   68-448   1hle A:,B:  

Catenulispora acidiphila DSM 44928 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|256389336|ref|YP_003110900.1|   1.31e-100   0.00000116   45-422   1a7c A:  

Thermobifida fusca YX has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|72162332|ref|YP_289989.1|   6.02e-83   0.00000000000445   8-363   1mtp A:,B:  

Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|297561820|ref|YP_003680794.1|   3.93e-79   0.0000000608   11-363   1mtp A:,B:  

Streptosporangium roseum DSM 43021 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|271968459|ref|YP_003342655.1|   4.84e-78   0.0000107   15-411   1a7c A:  

Streptomyces sp. PAMC26508 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|479319126|ref|YP_007859177.1|   1.15e-50   0.0000597   17-354   1mtp A:,B:  
 
Weak hits:
gi|479317260|ref|YP_007857311.1|   0.0000000000000681   0.0052   8-165   1e05 I:  
  0.0000000589   0.0051   279-385   1jmj A:  

Streptomyces flavogriseus ATCC 33331 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|357413678|ref|YP_004925414.1|   3.93e-50   0.0000576   17-354   1mtp A:,B:  
 
Weak hits:
gi|357415397|ref|YP_004927133.1|   0.000000000000249   0.0055   7-165   1att A:  
  0.0000000589   0.0051   279-385   1jmj A:  

Streptomyces sp. SirexAA-E has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|344999421|ref|YP_004802275.1|   4.06e-50   0.000056   15-357   1mtp A:,B:  

Streptomyces griseus subsp. griseus NBRC 13350 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|182438960|ref|YP_001826679.1|   7.46e-44   0.0000972   44-372   1mtp A:,B:  

Actinosynnema mirum DSM 43827 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|256375408|ref|YP_003099068.1|   7.46e-69   0.00000146   6-351   1mtp A:,B:  

Saccharomonospora viridis DSM 43017 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|257055420|ref|YP_003133252.1|   3.14e-80   0.000000721   6-372   1mtp A:,B:  

Saccharopolyspora erythraea NRRL 2338 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|134098090|ref|YP_001103751.1|   1.27e-86   0.000000286   4-367   1mtp A:,B:  

Amycolatopsis mediterranei U32 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|300788434|ref|YP_003768725.1|   1.96e-87   0.000000432   3-364   1mtp A:,B:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   46223 46223
No Yes Homo sapiens 76_38 Human 160 159
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 32 32
No Yes Gorilla gorilla 76_3.1 Western gorilla 39 39
No Yes Pongo abelii 76_2 Sumatran orangutan 37 37
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 35 35
No Yes Papio anubis 76 Olive baboon 40 40
No Yes Macaca mulatta 76_1 Rhesus monkey 58 57
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 78 78
No Yes Otolemur garnettii 76_3 Small-eared galago 37 37
No Yes Microcebus murinus 76_1 Gray mouse lemur 35 33
No Yes Rattus norvegicus 76_5.0 Norway rat 53 52
No Yes Mus musculus 76_38 House mouse 119 119
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 38 33
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 44 44
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 33 33
No Yes Cavia porcellus 76_3 Domestic guinea pig 46 46
No Yes Oryctolagus cuniculus 76_2 Rabbit 36 36
No Yes Ochotona princeps 76 American pika 37 33
No Yes Tupaia belangeri 76 Northern tree shrew 30 27
No Yes Sus scrofa 76_10.2 Pig 39 39
No Yes Bos taurus 76_3.1 Cattle 48 48
No Yes Ovis aries 76_3.1 Sheep 52 52
No Yes Vicugna pacos 76_1 Alpaca 29 27
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 27 27
No Yes Mustela putorius furo 76_1.0 Domestic ferret 33 33
No Yes Ailuropoda melanoleuca 76_1 Giant panda 36 36
No Yes Canis familiaris 76_3.1 Dog 39 39
No Yes Felis catus 76_6.2 Domestic cat 34 34
No Yes Equus caballus 76_2 Horse 43 43
No Yes Myotis lucifugus 76_2.0 Little brown bat 41 41
No Yes Pteropus vampyrus 76_1 Large flying fox 32 31
No Yes Sorex araneus 76_1 European shrew 30 29
No Yes Erinaceus europaeus 76 Western European hedgehog 26 24
No Yes Procavia capensis 76_1 Cape rock hyrax 31 29
No Yes Loxodonta africana 76_3 African savanna elephant 34 34
No Yes Echinops telfairi 76 Small Madagascar hedgehog 29 24
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 32 31
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 23 20
No Yes Macropus eugenii 76_1.0 Tammar wallaby 29 27
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 42 42
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 35 35
No Yes Ornithorhynchus anatinus 76_5 Platypus 32 32
No Yes Saccoglossus kowalevskii v3.0   7 7
No Yes Petromyzon marinus 76_7.0 Sea lamprey 10 10
No Yes Meleagris gallopavo 76_2 Turkey 30 30
No Yes Gallus gallus 76_4 Chicken 28 28
No Yes Anas platyrhynchos 76_1.0 Mallard 26 26
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 29 29
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 29 29
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 29 29
No Yes Anolis carolinensis 76_2.0 Green anole 30 30
No Yes Xenopus laevis African clawed frog 57 57
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 29 29
No Yes Latimeria chalumnae 76_1 Coelacanth 26 26
No Yes Lepisosteus oculatus 76 Spotted gar 21 21
No Yes Gadus morhua 76_1 Atlantic cod 29 29
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 23 23
No Yes Takifugu rubripes 76_4 Torafugu 75 75
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 39 39
No Yes Oryzias latipes 76_1 Japanese medaka 31 31
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 21 21
No Yes Poecilia formosa 76 Amazon molly 23 21
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 32 32
No Yes Astyanax mexicanus 76 Mexican tetra 25 25
No Yes Danio rerio 76_9 Zebrafish 50 50
No Yes Oikopleura dioica   6 6
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 3 3
No Yes Ciona intestinalis 76 Vase tunicate 8 8
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 13 12
No Yes Adineta vaga   15 15
No Yes Octopus bimaculoides 280   9 9
No Yes Crassostrea gigas 22 Pacific oyster 8 8
No Yes Lottia gigantea Owl limpet 5 5
No Yes Helobdella robusta   16 16
No Yes Capitella sp. I   4 4
No Yes Danaus plexippus OGS1.0 Monarch butterfly 21 21
No Yes Heliconius melpomene Postman butterfly 17 16
No Yes Bombyx mori Domestic silkworm 15 15
No Yes Nasonia vitripennis Jewel wasp 7 6
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 12 12
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 5 5
No Yes Linepithema humile v1.1 Argentine ant 5 5
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 5 5
No Yes Solenopsis invicta v.2.2.3 Red fire ant 5 5
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 6 5
No Yes Atta cephalotes v1.1   5 5
No Yes Camponotus floridanus v3.3 Florida carpenter ant 7 6
No Yes Lucilia cuprina Australian sheep blowfly 15 13
No Yes Drosophila grimshawi 1.3   16 16
No Yes Drosophila willistoni 1.3   19 19
No Yes Drosophila pseudoobscura 2.13   24 24
No Yes Drosophila persimilis 1.3   21 21
No Yes Drosophila suzukii   35 25
No Yes Drosophila yakuba 1.3   26 26
No Yes Drosophila simulans 1.3   23 23
No Yes Drosophila sechellia 1.3   28 28
No Yes Drosophila melanogaster 76_5 Fruit fly 45 45
No Yes Drosophila erecta 1.3   23 23
No Yes Drosophila ananassae 1.3   24 24
No Yes Drosophila virilis 1.2   16 16
No Yes Drosophila mojavensis 1.3   19 19
No Yes Megaselia scalaris 22   12 9
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 30 30
No Yes Culex pipiens quinquefasciatus Southern house mosquito 32 31
No Yes Anopheles darlingi 22 American malaria mosquito 9 8
No Yes Anopheles gambiae 49_3j African malaria mosquito 20 20
No Yes Tribolium castaneum 3.0 Red flour beetle 28 27
No Yes Pediculus humanus corporis (Early assembly) Human body louse 10 10
No Yes Acyrthosiphon pisum Pea aphid 13 12
No Yes Rhodnius prolixus 22   5 5
No Yes Daphnia pulex Common water flea 6 6
No Yes Strigamia maritima 22   9 8
No Yes Sarcoptes scabiei   7 7
No Yes Tetranychus urticae Two-spotted spider mite 20 20
No Yes Ixodes scapularis (Preliminary) Black-legged tick 34 33
No Yes Pristionchus pacificus   7 7
No Yes Meloidogyne incognita Southern root-knot nematode 2 2
No Yes Onchocerca volvulus 22   6 6
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 19 19
No Yes Caenorhabditis japonica   8 7
No Yes Caenorhabditis brenneri   14 14
No Yes Caenorhabditis remanei   7 7
No Yes Caenorhabditis elegans 76_235 Roundworm 11 11
No Yes Caenorhabditis briggsae 2   7 7
No Yes Trichinella spiralis 22   3 3
No Yes Hymenolepis microstoma   3 3
No Yes Echinococcus multilocularis   3 3
No Yes Echinococcus granulosus   5 5
No Yes Taenia solium Pork tapeworm 3 3
No Yes Schistosoma mansoni   8 8
No Yes Mnemiopsis leidyi Sea walnut 7 7
No Yes Thelohanellus kitauei   17 17
No Yes Acropora digitifera v1.0   3 3
No Yes Nematostella vectensis 1.0 Starlet sea anemone 3 3
No Yes Hydra vulgaris   1 1
No Yes Trichoplax adhaerens   3 3
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Fusarium verticillioides 7600   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Entamoeba dispar 1.2   2 2
No Yes Entamoeba invadens 1.2   6 6
No Yes Entamoeba histolytica 1   1 1
No Yes Selaginella moellendorffii   2 2
No Yes Pinus taeda Loblolly pine 3 3
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 3 3
No Yes Theobroma cacao B97-61/B2 v1 Cacao 2 2
No Yes Gossypium raimondii v221   2 2
No Yes Citrus clementina v165   2 2
No Yes Citrus sinensis v154 Sweet orange 3 3
No Yes Thellungiella halophila v173   9 9
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 12 12
No Yes Capsella rubella v183   14 14
No Yes Arabidopsis lyrata Lyrate rockcress 6 6
No Yes Arabidopsis thaliana 10 Thale cress 9 9
No Yes Carica papaya Papaya 2 2
No Yes Medicago truncatula Barrel medic 29 29
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Glycine max v109 Soybean 2 2
No Yes Cucumis sativus v122 Cucumber 4 4
No Yes Fragaria vesca Wild strawberry 19 19
No Yes Malus domestica v196 Apple 25 25
No Yes Prunus persica v139 Peach 2 2
No Yes Linum usitatissimum v200 Flax 6 6
No Yes Manihot esculenta v147 Cassava 3 3
No Yes Populus trichocarpa v156 Black cottonwood 2 2
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 19 19
No Yes Solanum lycopersicum v.2.3 Tomato 5 5
No Yes Solanum tuberosum Potato 11 11
No Yes Actinidia chinensis Hongyang   6 6
No Yes Aquilegia coerulea v195   9 9
No Yes Triticum urartu 22   26 26
No Yes Triticum aestivum 22 Bread wheat 29 29
No Yes Aegilops tauschii 22   42 41
No Yes Brachypodium distachyon Stiff brome 13 13
No Yes Oryza barthii 22 African wild rice 19 14
No Yes Oryza meridionalis 22   9 8
No Yes Oryza glumaepatula 22   17 12
No Yes Oryza glaberrima African rice 7 7
No Yes Oryza punctata 22   12 11
No Yes Oryza nivara 22   17 14
No Yes Oryza brachyantha 22 Malo sina 2 2
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 17 16
No Yes Oryza sativa v193 Rice 17 16
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Panicum virgatum v202 Switchgrass 33 33
No Yes Setaria italica v164 Foxtail millet 15 15
No Yes Zea mays subsp. mays Maize 4 4
No Yes Zea mays v181 Maize 4 4
No Yes Sorghum bicolor Sorghum 15 15
No Yes Musa balbisiana Balbis banana 2 2
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   4 4
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Giardia lamblia 2.3   1 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Perkinsus marinus ATCC 50983   3 3
No Yes Tetrahymena thermophila SB210 1   11 11
No Yes Ichthyophthirius multifiliis strain G5   3 3
No Yes Neospora caninum   2 2
No Yes Toxoplasma gondii VEG   2 2
No Yes Toxoplasma gondii ME49   2 2
No Yes Toxoplasma gondii GT1   2 2
No Yes Naegleria gruberi   10 10
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Emiliania huxleyi CCMP1516   2 2
No Yes Microcoleus sp. PCC 7113   2 2
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes Gloeobacter violaceus PCC 7421   2 2
No Yes Rivularia sp. PCC 7116   1 1
No Yes Calothrix sp. PCC 7507   1 1
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Eggerthella sp. YY7918   1 1
No Yes Eggerthella lenta DSM 2243   1 1
No Yes Olsenella uli DSM 7084   1 1
No Yes Catenulispora acidiphila DSM 44928   1 1
No Yes Thermobifida fusca YX   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   1 1
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Verrucosispora maris AB-18-032   1 1
No Yes Amycolicicoccus subflavus DQS3-9A1   1 1
No Yes Beutenbergia cavernae DSM 12333   1 1
No Yes Brachybacterium faecium DSM 4810   1 1
No Yes Xylanimonas cellulosilytica DSM 15894   1 1
No Yes [Cellvibrio] gilvus ATCC 13127   1 1
No Yes Arthrobacter phenanthrenivorans Sphe3   1 1
No Yes Arthrobacter aurescens TC1   1 1
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Arthrobacter sp. FB24   1 1
No Yes Renibacterium salmoninarum ATCC 33209   1 1
No Yes Bifidobacterium longum subsp. longum JDM301   1 1
No Yes Bifidobacterium dentium Bd1   1 1
No Yes Bifidobacterium breve ACS-071-V-Sch8b   1 1
No Yes Actinomyces sp. F0330   1 1
No Yes Dehalococcoides ethenogenes 195   1 1
No Yes Dehalococcoides sp. BAV1   1 1
No Yes Dehalogenimonas lykanthroporepellens BL-DC-9   1 1
No Yes Natranaerobius thermophilus JW/NM-WN-LF   1 1
No Yes Symbiobacterium thermophilum IAM 14863   2 2
No Yes Clostridium clariflavum DSM 19732   1 1
No Yes Eubacterium siraeum   1 1
No Yes Clostridium thermocellum ATCC 27405   3 3
No Yes Ruminococcus albus 7   2 2
No Yes Desulfosporosinus orientis DSM 765   1 1
No Yes Syntrophobotulus glycolicus DSM 8271   1 1
No Yes Desulfitobacterium hafniense Y51   1 1
No Yes Desulfitobacterium dehalogenans ATCC 51507   1 1
No Yes Desulfotomaculum acetoxidans DSM 771   1 1
No Yes Acetobacterium woodii DSM 1030   1 1
No Yes Eubacterium limosum KIST612   1 1
No Yes Clostridium phytofermentans ISDg   2 2
No Yes Coprococcus sp. ART55/1   1 1
No Yes Roseburia hominis A2-183   1 1
No Yes Roseburia intestinalis   1 1
No Yes Butyrivibrio fibrisolvens   1 1
No Yes Alkaliphilus metalliredigens QYMF   1 1
No Yes Clostridium ljungdahlii DSM 13528   2 2
No Yes Clostridium kluyveri DSM 555   1 1
No Yes Thermodesulfobium narugense DSM 14796   2 2
No Yes Thermoanaerobacter tengcongensis MB4   1 1
No Yes Paenibacillus mucilaginosus 3016   2 2
No Yes Oceanobacillus iheyensis HTE831   2 2
No Yes Bacillus atrophaeus 1942   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus cellulosilyticus DSM 2522   2 2
No Yes Gemmatimonas aurantiaca T-27   1 1
No Yes Chlorobium limicola DSM 245   1 1
No Yes Haliscomenobacter hydrossis DSM 1100   1 1
No Yes Salinibacter ruber M8   1 1
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Leadbetterella byssophila DSM 17132   1 1
No Yes Dyadobacter fermentans DSM 18053   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Tannerella forsythia ATCC 43037   1 1
No Yes Paludibacter propionicigenes WB4   1 1
No Yes Prevotella melaninogenica ATCC 25845   1 1
No Yes Prevotella ruminicola 23   1 1
No Yes Porphyromonas asaccharolytica DSM 20707   1 1
No Yes Pedobacter heparinus DSM 2366   1 1
No Yes Candidatus Protochlamydia amoebophila UWE25   1 1
No Yes Simkania negevensis Z   2 2
No Yes Planctomyces brasiliensis DSM 5305   1 1
No Yes Fretibacterium fastidiosum   1 1
No Yes Sphaerochaeta pleomorpha str. Grapes   1 1
No Yes Sphaerochaeta globus str. Buddy   1 1
No Yes Thermodesulfobacterium sp. OPB45   1 1
No Yes Calditerrivibrio nitroreducens DSM 19672   2 2
No Yes Thermotoga lettingae TMO   1 1
No Yes Thermotoga thermarum DSM 5069   1 1
No Yes Sulfurihydrogenibium sp. YO3AOP1   1 1
No Yes Dictyoglomus turgidum DSM 6724   1 1
No Yes Dictyoglomus thermophilum H-6-12   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Desulfomonile tiedjei DSM 6799   1 1
No Yes Hippea maritima DSM 10411   1 1
No Yes Sorangium cellulosum 'So ce 56'   7 7
No Yes Anaeromyxobacter sp. Fw109-5   1 1
No Yes Stigmatella aurantiaca DW4/3-1   1 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Cenarchaeum symbiosum A   5 5
No Yes Candidatus Korarchaeum cryptofilum OPF8   1 1
No Yes Thermofilum sp. 1910b   1 1
No Yes Pyrobaculum sp. 1860   1 1
No Yes Pyrobaculum calidifontis JCM 11548   1 1
No Yes Pyrobaculum arsenaticum DSM 13514   1 1
No Yes Thermoproteus neutrophilus V24Sta   1 1
No Yes Pyrobaculum aerophilum str. IM2   1 1
No Yes Pyrobaculum islandicum DSM 4184   1 1
No Yes Methanococcoides burtonii DSM 6242   3 3
No Yes Methanosarcina acetivorans C2A   3 3
No Yes Methanosarcina mazei Go1   1 1
No Yes Methanosphaerula palustris E1-9c   1 1
No Yes Methanoplanus petrolearius DSM 11571   3 3
No Yes Methanoculleus bourgensis MS2   2 2
No Yes Methanoculleus marisnigri JR1   2 2
No Yes Thermococcus sp. 4557   1 1
No Yes Thermococcus kodakarensis KOD1   1 1
No Yes Thermococcus gammatolerans EJ3   1 1
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Haloterrigena turkmenica DSM 5511   1 1
No Yes Natrialba magadii ATCC 43099   1 1
No Yes Haloferax mediterranei ATCC 33500   1 1
No Yes Haloferax volcanii DS2   1 1
No Yes Aciduliprofundum sp. MAR08-339   1 1
No Yes Aciduliprofundum boonei T469   2 2
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 50 50
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 41 41
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 20 20
No Yes Ascaris suum Victoria/Ghent Pig roundworm 8 8
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 9 9
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 2 2
No Yes Hordeum vulgare 22 Domesticated barley 14 14
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 16 14
No Yes Neospora caninum Nc-Liverpool 6.2   2 2
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Oscillatoria acuminata PCC 6304   2 2
No Yes Arthrospira platensis NIES-39   2 2
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   2 2
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Gordonibacter pamelaeae 7-10-1-b   1 1
No Yes Frankia sp. EuI1c   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces albus J1074   1 1
No Yes Streptomyces fulvissimus DSM 40593   1 1
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Mycobacterium kansasii ATCC 12478   2 2
No Yes Bifidobacterium longum NCC2705   1 1
No Yes Bifidobacterium longum DJO10A   1 1
No Yes Bifidobacterium longum subsp. infantis 157F   1 1
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   1 1
No Yes Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222   1 1
No Yes Bifidobacterium longum subsp. longum KACC 91563   1 1
No Yes Bifidobacterium longum subsp. longum BBMN68   1 1
No Yes Bifidobacterium longum subsp. longum F8   1 1
No Yes Bifidobacterium longum subsp. longum JCM 1217   1 1
No Yes Bifidobacterium breve UCC2003   1 1
No Yes Actinomyces viscosus C505   1 1
No Yes Dehalococcoides mccartyi GY50   1 1
No Yes Dehalococcoides mccartyi DCMB5   1 1
No Yes Dehalococcoides mccartyi BTF08   1 1
No Yes Dehalococcoides sp. GT   1 1
No Yes Dehalococcoides sp. VS   1 1
No Yes Dehalococcoides sp. CBDB1   1 1
No Yes Clostridium thermocellum DSM 1313   3 3
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   1 1
No Yes Desulfitobacterium dichloroeliminans LMG P-21439   1 1
No Yes Desulfitobacterium hafniense DCB-2   1 1
No Yes Desulfotomaculum gibsoniae DSM 7213   2 2
No Yes Clostridium autoethanogenum DSM 10061   2 2
No Yes Clostridium kluyveri NBRC 12016   1 1
No Yes Paenibacillus sp. Y412MC10   1 1
No Yes Paenibacillus mucilaginosus KNP414   2 2
No Yes Paenibacillus mucilaginosus K02   2 2
No Yes Bacillus licheniformis 9945A   1 1
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   1 1
No Yes Bacillus subtilis subsp. spizizenii str. W23   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Chlorobium phaeobacteroides BS1   1 1
No Yes Salinibacter ruber DSM 13855   1 1
No Yes Emticicia oligotrophica DSM 17448   1 1
No Yes Sorangium cellulosum So0157-2   4 4
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Methanosarcina mazei Tuc01   1 1
No Yes Methanoregula formicica Methanoregula formicicum SMSP   1 1
No Yes Thermococcus sp. AM4   1 1
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Halorhabdus tiamatea SARL4B   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 145 145
No Yes Homo sapiens (NCBI version) Human 60 60
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 63 63
No Yes Heliconius numata (Incomplete)   20 20
No Yes Loa loa v3.3 (Request) Eye worm 6 6
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 4 4
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 13 13
No Yes Lotus japonicus (Early assembly)   50 50
No Yes Malus x domestica (Duplicate) Apple 25 25
No Yes Ricinus communis (Early assembly) Castor bean 3 3
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   9 7
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 5 5
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 5 5
No Yes Homo sapiens 69_37 Human 36 36
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 32 32
No Yes Gorilla gorilla 69_3.1 Western gorilla 35 35
No Yes Pongo abelii 69_2 Sumatran orangutan 36 36
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 35 35
No Yes Macaca mulatta 69_1 Rhesus monkey 37 37
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 38 38
No Yes Otolemur garnettii 69_3 Small-eared galago 36 36
No Yes Microcebus murinus 69_1 Gray mouse lemur 35 33
No Yes Rattus norvegicus 69_3.4 Norway rat 47 46
No Yes Mus musculus 69_38 House mouse 63 63
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 38 33
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 40 40
No Yes Cavia porcellus 69_3 Domestic guinea pig 44 44
No Yes Oryctolagus cuniculus 69_2 Rabbit 33 33
No Yes Ochotona princeps 69 American pika 37 33
No Yes Tupaia belangeri 69 Northern tree shrew 30 27
No Yes Sus scrofa 69_10.2 Pig 36 36
No Yes Bos taurus 69_3.1 Cattle 46 46
No Yes Vicugna pacos 69_1 Alpaca 29 27
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 27 27
No Yes Mustela putorius furo 69_1.0 Domestic ferret 33 33
No Yes Ailuropoda melanoleuca 69_1 Giant panda 35 35
No Yes Canis familiaris 69_3.1 Dog 34 34
No Yes Felis catus 69 Domestic cat 34 31
No Yes Equus caballus 69_2 Horse 41 41
No Yes Myotis lucifugus 69_2.0 Little brown bat 41 41
No Yes Pteropus vampyrus 69_1 Large flying fox 32 31
No Yes Sorex araneus 69_1 European shrew 30 29
No Yes Erinaceus europaeus 69 Western European hedgehog 26 24
No Yes Procavia capensis 69_1 Cape rock hyrax 31 29
No Yes Loxodonta africana 69_3 African savanna elephant 32 32
No Yes Echinops telfairi 69 Small Madagascar hedgehog 29 24
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 33 29
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 23 20
No Yes Macropus eugenii 69_1.0 Tammar wallaby 29 27
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 34 34
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 35 35
No Yes Ornithorhynchus anatinus 69_5 Platypus 29 29
No Yes Petromyzon marinus 69_7.0 Sea lamprey 10 10
No Yes Meleagris gallopavo 69_2 Turkey 24 24
No Yes Gallus gallus 69_2 Chicken 25 25
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 27 27
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 28 28
No Yes Anolis carolinensis 69_2.0 Green anole 27 27
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 24 24
No Yes Latimeria chalumnae 69_1 Coelacanth 19 19
No Yes Gadus morhua 69_1 Atlantic cod 20 20
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 20 20
No Yes Takifugu rubripes 69_4 Torafugu 29 29
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 23 23
No Yes Oryzias latipes 69_1 Japanese medaka 20 20
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 21 21
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 28 28
No Yes Danio rerio 69_9 Zebrafish 32 32
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 3 3
No Yes Ciona intestinalis 69 Vase tunicate 8 8
No Yes Drosophila melanogaster 69_5 Fruit fly 26 26
No Yes Caenorhabditis elegans 69_215 Roundworm 6 6
No Yes Arabidopsis thaliana 10 Thale cress 8 8
No Yes 2_050719S (meta-genome)   2 2
No Yes 3_050719R (meta-genome)   10 10
No Yes 4_050719Q (meta-genome)   6 6
No Yes 5_050719P (meta-genome)   14 14
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Bath Hot Springs, filamentous community (meta-genome)   1 1
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   11 11
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   3 3
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   4 4
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   5 5
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   4 4
No Yes Human Gut Community Subject 7 (meta-genome)   1 1
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   9 9
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   1 1
No Yes Mouse Gut Community ob1 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   18507 18281
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes Protozoadb 2010_08 (Protozoadb)   12 12
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   3 3
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   10 10
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   3 3
No Yes STRING v9.0.5 (STRING)   1404 1385
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   14708 14462
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   10 10
No Yes Global Ocean Sampling Expedition (GOS)   21 21
No Yes NCBI plasmid sequences (Plasmids)   5 5
No Yes NCBI viral sequences (Viral)   61 61
No Yes PDB chains (SCOP 1.75) (PDB)   50 50
No Yes Protein Data Bank (all PDB sequenc)   207 207
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1047 1047
No Yes TargetDB (Targets)   22 22
No Yes UniProt viral sequences (Viral)   163 163

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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