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  Home > Genomes > Aerolisin/ETX pore-forming domain domains in all genomes


Aerolisin/ETX pore-forming domain superfamily domain assignments
in
all genomes

Assignment details

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25 selected genomes have 124 significant domains in 124 proteins.

Showing genomes 1 to 25 of 205
  1 2 3 4 5 6 7 8 9   Next Last

Ornithorhynchus anatinus 76_5 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOANP00000008491   0.00000000732   232-303   ETX/MTX2  

Saccoglossus kowalevskii v3.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
Sakowv30024339m   0.00000000589   65-201   (Pro)aerolysin, pore-forming lobe  
 
Weak hits:
Sakowv30001660m   0.0863   1-84   (Pro)aerolysin, pore-forming lobe  
Sakowv30027507m   0.00262   14-71   (Pro)aerolysin, pore-forming lobe  

Petromyzon marinus 76_7.0 has 26 significant domains in 26 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPMAP00000001233   3.14e-39   75-309   ETX/MTX2  
ENSPMAP00000002984   7.06e-33   75-307   ETX/MTX2  
ENSPMAP00000004119   1.78e-35   74-309   (Pro)aerolysin, pore-forming lobe  
ENSPMAP00000004730   1.8e-39   76-315   ETX/MTX2  
ENSPMAP00000004731   4.97e-39   74-309   ETX/MTX2  
ENSPMAP00000004732   9.42e-40   74-309   ETX/MTX2  
ENSPMAP00000004735   2.33e-42   76-310   ETX/MTX2  
ENSPMAP00000004738   3.4e-39   76-304   ETX/MTX2  
ENSPMAP00000004739   1.1e-38   76-304   ETX/MTX2  
ENSPMAP00000005408   5.75e-42   76-305   ETX/MTX2  
ENSPMAP00000006159   1.7e-40   76-304   ETX/MTX2  
ENSPMAP00000006927   7.59e-41   74-311   ETX/MTX2  
ENSPMAP00000007103   9.15e-36   74-311   (Pro)aerolysin, pore-forming lobe  
ENSPMAP00000007134   6.02e-35   74-310   (Pro)aerolysin, pore-forming lobe  
ENSPMAP00000007137   3.92e-35   72-312   (Pro)aerolysin, pore-forming lobe  
ENSPMAP00000007337   4.45e-42   76-305   ETX/MTX2  
ENSPMAP00000008996   2.01e-31   76-311   ETX/MTX2  
ENSPMAP00000010004   1.88e-36   74-309   (Pro)aerolysin, pore-forming lobe  
ENSPMAP00000010899   3.92e-41   76-303   ETX/MTX2  
ENSPMAP00000010914   1.41e-34   74-309   (Pro)aerolysin, pore-forming lobe  
ENSPMAP00000010915   1.15e-35   74-310   (Pro)aerolysin, pore-forming lobe  
ENSPMAP00000010999   4.18e-37   74-311   (Pro)aerolysin, pore-forming lobe  
ENSPMAP00000011002   3.14e-37   74-311   (Pro)aerolysin, pore-forming lobe  
ENSPMAP00000011004   3.14e-37   74-311   (Pro)aerolysin, pore-forming lobe  
ENSPMAP00000011071   1.26e-34   74-310   (Pro)aerolysin, pore-forming lobe  
ENSPMAP00000011188   1.44e-34   74-310   (Pro)aerolysin, pore-forming lobe  
 
Weak hits:
ENSPMAP00000010774   0.0889   57-137   (Pro)aerolysin, pore-forming lobe  

Gallus gallus 76_4 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGALP00000043173   0.000000000392   133-349   (Pro)aerolysin, pore-forming lobe  

Anas platyrhynchos 76_1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSAPLP00000007305   0.0000785   85-284   ETX/MTX2  
 
Weak hits:
ENSAPLP00000002088   0.0523   247-286   ETX/MTX2  

Ficedula albicollis 76_1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSFALP00000013633   0.000000000000275   182-325   ETX/MTX2  

Anolis carolinensis 76_2.0 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSACAP00000022000   1.96e-24   152-384   ETX/MTX2  
ENSACAP00000022206   1.8e-20   167-388   (Pro)aerolysin, pore-forming lobe  
ENSACAP00000023114   4.18e-28   108-351   ETX/MTX2  

Xenopus laevis has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|163915559|gb|AAI57428|   0.0000000785   276-441   ETX/MTX2  
gi|168693479|ref|NP_001108256|   0.0000000785   276-441   ETX/MTX2  
gi|189441700|gb|AAI67496|   0.00000288   277-440   (Pro)aerolysin, pore-forming lobe  
gi|195972837|ref|NP_001124418|   0.00000288   277-440   (Pro)aerolysin, pore-forming lobe  
 
Weak hits:
gi|148223884|ref|NP_001088111|   0.000353   1449-1574   ETX/MTX2  
  0.000536   880-954   ETX/MTX2  
gi|52354693|gb|AAH82955|   0.000353   1449-1574   ETX/MTX2  
  0.000536   880-954   ETX/MTX2  

Xenopus tropicalis 76_4.2 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSXETP00000048628   0.0000000837   256-383   ETX/MTX2  
ENSXETP00000060186   0.00000262   218-436   (Pro)aerolysin, pore-forming lobe  
ENSXETP00000060573   0.000068   216-413   (Pro)aerolysin, pore-forming lobe  
ENSXETP00000061896   0.00000392   282-438   (Pro)aerolysin, pore-forming lobe  
ENSXETP00000063124   2.22e-16   194-409   (Pro)aerolysin, pore-forming lobe  
 
Weak hits:
ENSXETP00000013801   0.0314   92-176   ETX/MTX2  

Latimeria chalumnae 76_1 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSLACP00000000758   3.79e-18   182-334   ETX/MTX2  
ENSLACP00000007621   3.27e-23   88-297   ETX/MTX2  
ENSLACP00000008623   1.44e-25   77-319   ETX/MTX2  
ENSLACP00000008624   6.15e-25   74-304   ETX/MTX2  
ENSLACP00000008625   5.49e-25   74-302   ETX/MTX2  
 
Weak hits:
ENSLACP00000004048   0.0628   89-115   ETX/MTX2  
ENSLACP00000004049   0.0889   101-127   ETX/MTX2  

Lepisosteus oculatus 76 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSLOCP00000000808   2.35e-20   193-312   ETX/MTX2  
ENSLOCP00000001582   0.00000000000929   262-396   ETX/MTX2  
ENSLOCP00000001631   9.81e-18   274-407   (Pro)aerolysin, pore-forming lobe  
ENSLOCP00000012059   2.04e-33   74-314   (Pro)aerolysin, pore-forming lobe  
ENSLOCP00000022156   1.12e-40   74-312   (Pro)aerolysin, pore-forming lobe  
ENSLOCP00000022218   4.18e-41   74-312   (Pro)aerolysin, pore-forming lobe  
ENSLOCP00000022219   4.18e-41   74-311   (Pro)aerolysin, pore-forming lobe  
 
Weak hits:
ENSLOCP00000021717   0.000392   162-227   ETX/MTX2  

Gadus morhua 76_1 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGMOP00000005285   2.88e-26   74-311   ETX/MTX2  
ENSGMOP00000009806   6.28e-40   140-385   (Pro)aerolysin, pore-forming lobe  
ENSGMOP00000011141   8.37e-28   72-310   ETX/MTX2  
ENSGMOP00000014697   8.89e-30   74-312   (Pro)aerolysin, pore-forming lobe  
ENSGMOP00000018263   2.41e-28   74-296   ETX/MTX2  
ENSGMOP00000021789   2.62e-36   91-336   (Pro)aerolysin, pore-forming lobe  
 
Weak hits:
ENSGMOP00000018259   0.00732   160-205   ETX/MTX2  

Takifugu rubripes 76_4 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTRUP00000024407   3.4e-39   105-350   (Pro)aerolysin, pore-forming lobe  

Gasterosteus aculeatus 76_1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGACP00000019393   0.0000000000000654   148-271   (Pro)aerolysin, pore-forming lobe  
ENSGACP00000019394   1.31e-39   147-392   (Pro)aerolysin, pore-forming lobe  
ENSGACP00000019406   2.09e-38   124-362   (Pro)aerolysin, pore-forming lobe  
 
Weak hits:
ENSGACP00000013266   0.0314   39-97   ETX/MTX2  
ENSGACP00000024096   0.0942   119-159   ETX/MTX2  
ENSGACP00000024098   0.0968   117-157   ETX/MTX2  

Oryzias latipes 76_1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSORLP00000000247   1.12e-39   118-338   (Pro)aerolysin, pore-forming lobe  
ENSORLP00000000248   1.44e-40   83-304   (Pro)aerolysin, pore-forming lobe  
ENSORLP00000011827   0.00000000000017   180-348   ETX/MTX2  
 
Weak hits:
ENSORLP00000024644   0.00994   164-214   ETX/MTX2  

Xiphophorus maculatus 76_4.4.2 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSXMAP00000000050   1.7e-44   2-217   (Pro)aerolysin, pore-forming lobe  
ENSXMAP00000008764   7.59e-23   147-314   (Pro)aerolysin, pore-forming lobe  

Poecilia formosa 76 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPFOP00000003908   3.53e-34   131-370   ETX/MTX2  
ENSPFOP00000003913   2.75e-43   153-384   ETX/MTX2  
ENSPFOP00000020609   1.96e-41   104-343   ETX/MTX2  
ENSPFOP00000020610   0.0000022   81-141   (Pro)aerolysin, pore-forming lobe  
ENSPFOP00000020978   9.16e-43   72-307   ETX/MTX2  
 
Weak hits:
ENSPFOP00000005992   0.0628   187-231   ETX/MTX2  

Oreochromis niloticus 76_1.0 has 9 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSONIP00000017477   9.42e-38   121-355   ETX/MTX2  
ENSONIP00000017478   2.88e-37   126-359   ETX/MTX2  
ENSONIP00000017479   1.7e-37   121-354   ETX/MTX2  
ENSONIP00000017483   4.84e-34   105-350   ETX/MTX2  
ENSONIP00000017485   3.27e-25   161-378   ETX/MTX2  
ENSONIP00000017489   2.75e-34   102-347   (Pro)aerolysin, pore-forming lobe  
ENSONIP00000017490   1.46e-16   147-290   ETX/MTX2  
ENSONIP00000020661   3.27e-35   102-323   (Pro)aerolysin, pore-forming lobe  
ENSONIP00000025710   2.88e-39   75-315   (Pro)aerolysin, pore-forming lobe  
 
Weak hits:
ENSONIP00000006533   0.0863   130-180   ETX/MTX2  
ENSONIP00000017525   0.0732   272-295   ETX/MTX2  
ENSONIP00000017526   0.0602   198-221   ETX/MTX2  

Astyanax mexicanus 76 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSAMXP00000014603   0.00000000000225   127-225   (Pro)aerolysin, pore-forming lobe  
ENSAMXP00000025559   0.000000000000157   160-308   ETX/MTX2  
ENSAMXP00000025683   0.00000000000114   198-314   ETX/MTX2  
ENSAMXP00000025989   0.000000000942   168-304   ETX/MTX2  
ENSAMXP00000026508   1.62e-46   72-310   ETX/MTX2  
ENSAMXP00000027056   1.07e-37   106-349   ETX/MTX2  
 
Weak hits:
ENSAMXP00000002907   0.0837   151-198   ETX/MTX2  
ENSAMXP00000011509   0.0445   66-119   ETX/MTX2  
ENSAMXP00000012823   0.00201   76-145   (Pro)aerolysin, pore-forming lobe  

Danio rerio 76_9 has 12 significant domains in 12 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSDARP00000057100   2.88e-57   74-312   (Pro)aerolysin, pore-forming lobe  
ENSDARP00000073072   1.91e-50   74-312   (Pro)aerolysin, pore-forming lobe  
ENSDARP00000074658   2.09e-17   129-329   ETX/MTX2  
ENSDARP00000085295   1.96e-53   74-312   (Pro)aerolysin, pore-forming lobe  
ENSDARP00000092867   4.71e-39   74-316   (Pro)aerolysin, pore-forming lobe  
ENSDARP00000098271   2.88e-57   74-312   (Pro)aerolysin, pore-forming lobe  
ENSDARP00000099044   4.18e-51   74-312   (Pro)aerolysin, pore-forming lobe  
ENSDARP00000099524   4.45e-23   74-207   (Pro)aerolysin, pore-forming lobe  
ENSDARP00000100908   8.63e-43   74-311   (Pro)aerolysin, pore-forming lobe  
ENSDARP00000101037   2.88e-52   74-312   (Pro)aerolysin, pore-forming lobe  
ENSDARP00000115981   3.4e-53   74-312   (Pro)aerolysin, pore-forming lobe  
ENSDARP00000128975   5.75e-16   116-307   ETX/MTX2  
 
Weak hits:
ENSDARP00000003648   0.0602   48-168   ETX/MTX2  
ENSDARP00000109567   0.0811   1084-1153   ETX/MTX2  
ENSDARP00000111302   0.0602   48-168   ETX/MTX2  

Oikopleura dioica has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
GSOIDT00001836001   0.0000523   346-419   ETX/MTX2  
 
Weak hits:
GSOIDT00013059001   0.0123   110-191   ETX/MTX2  
GSOIDT00013063001   0.0123   110-191   ETX/MTX2  
GSOIDT00015143001   0.0249   52-141   ETX/MTX2  
GSOIDT00015200001   0.0549   70-106   ETX/MTX2  
GSOIDT00016378001   0.00233   585-668   ETX/MTX2  
GSOIDT00016868001   0.0288   118-176   ETX/MTX2  

Adineta vaga has 9 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
GSADVT00002627001   0.000000837   69-183   ETX/MTX2  
GSADVT00009763001   0.000000000000462   80-313   ETX/MTX2  
GSADVT00017714001   1.14e-17   70-292   ETX/MTX2  
GSADVT00036293001   0.0000000549   117-216   ETX/MTX2  
GSADVT00042897001   4.71e-18   46-271   ETX/MTX2  
GSADVT00052690001   7.19e-19   117-317   ETX/MTX2  
GSADVT00054297001   0.0000000000000034   57-262   ETX/MTX2  
GSADVT00066657001   1.7e-18   14-142   ETX/MTX2  
GSADVT00066659001   2.88e-19   154-325   ETX/MTX2  

Octopus bimaculoides 280 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
Ocbimv22010616m.p   0.00000000000484   66-207   ETX/MTX2  
Ocbimv22015243m.p   0.0000641   24-117   ETX/MTX2  
Ocbimv22020695m.p   4.19e-20   25-243   ETX/MTX2  
Ocbimv22034557m.p   5.36e-23   32-252   ETX/MTX2  

Crassostrea gigas 22 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
EKC18498   7.72e-18   49-254   (Pro)aerolysin, pore-forming lobe  
EKC22871   1.12e-26   30-241   ETX/MTX2  
EKC26094   0.0000034   943-1061   ETX/MTX2  
EKC29577   3.79e-20   29-253   ETX/MTX2  
EKC33949   0.000000000000667   65-206   ETX/MTX2  
 
Weak hits:
EKC20505   0.0968   94-113   ETX/MTX2  
EKC28627   0.00288   341-382   ETX/MTX2  
EKC33671   0.00445   178-284   ETX/MTX2  
EKC37284   0.0149   44-94   ETX/MTX2  

Lottia gigantea has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
jgi|Lotgi1|103152|e_gw1.1.406.1   4.32e-27   4-204   ETX/MTX2  
jgi|Lotgi1|104834|e_gw1.3.347.1   2.49e-28   53-261   ETX/MTX2  
jgi|Lotgi1|165075|fgenesh2_pg.C_sca_49000084   0.00000000589   79-287   ETX/MTX2  
 
Weak hits:
jgi|Lotgi1|158666|fgenesh2_pg.C_sca_18000016   0.00131   89-205   ETX/MTX2  
jgi|Lotgi1|159257|fgenesh2_pg.C_sca_19000294   0.0445   88-125   ETX/MTX2  
jgi|Lotgi1|188384|estExt_Genewise1.C_sca_240078   0.00288   35-112   (Pro)aerolysin, pore-forming lobe  
jgi|Lotgi1|228264|estExt_fgenesh2_pg.C_sca_20144   0.0418   218-247   ETX/MTX2  

  1 2 3 4 5 6 7 8 9   Next Last
Showing genomes 1 to 25 of 205

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Select to display   Genome       Domains   Proteins
No Yes ALL   7456 7456
No Yes Ornithorhynchus anatinus 76_5 Platypus 1 1
No Yes Saccoglossus kowalevskii v3.0   1 1
No Yes Petromyzon marinus 76_7.0 Sea lamprey 26 26
No Yes Gallus gallus 76_4 Chicken 1 1
No Yes Anas platyrhynchos 76_1.0 Mallard 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1 1
No Yes Anolis carolinensis 76_2.0 Green anole 3 3
No Yes Xenopus laevis African clawed frog 4 4
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 5 5
No Yes Latimeria chalumnae 76_1 Coelacanth 5 5
No Yes Lepisosteus oculatus 76 Spotted gar 7 7
No Yes Gadus morhua 76_1 Atlantic cod 6 6
No Yes Takifugu rubripes 76_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 3 3
No Yes Oryzias latipes 76_1 Japanese medaka 3 3
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 2 2
No Yes Poecilia formosa 76 Amazon molly 5 5
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 9 9
No Yes Astyanax mexicanus 76 Mexican tetra 6 6
No Yes Danio rerio 76_9 Zebrafish 12 12
No Yes Oikopleura dioica   1 1
No Yes Adineta vaga   9 9
No Yes Octopus bimaculoides 280   4 4
No Yes Crassostrea gigas 22 Pacific oyster 5 5
No Yes Lottia gigantea Owl limpet 3 3
No Yes Helobdella robusta   4 4
No Yes Capitella sp. I   6 6
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Bombyx mori Domestic silkworm 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 1 1
No Yes Strigamia maritima 22   3 3
No Yes Ixodes scapularis (Preliminary) Black-legged tick 18 18
No Yes Pristionchus pacificus   1 1
No Yes Meloidogyne incognita Southern root-knot nematode 2 2
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   3 3
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 4 4
No Yes Caenorhabditis japonica   2 2
No Yes Caenorhabditis brenneri   3 3
No Yes Caenorhabditis remanei   2 2
No Yes Caenorhabditis elegans 76_235 Roundworm 6 6
No Yes Caenorhabditis briggsae 2   2 2
No Yes Trichinella spiralis 22   3 3
No Yes Hymenolepis microstoma   2 2
No Yes Echinococcus multilocularis   2 2
No Yes Echinococcus granulosus   2 2
No Yes Taenia solium Pork tapeworm 2 2
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 9 9
No Yes Acropora digitifera v1.0   5 5
No Yes Nematostella vectensis 1.0 Starlet sea anemone 10 10
No Yes Hydra vulgaris   2 2
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Mortierella verticillata NRRL 6337   1 1
No Yes Sphaerobolus stellatus v1.0   2 2
No Yes Coprinopsis cinerea okayama7 130 v3   3 3
No Yes Galerina marginata v1.0   2 2
No Yes Hebeloma cylindrosporum h7 v2.0   2 2
No Yes Laccaria bicolor S238N-H82   4 4
No Yes Agaricus bisporus var. bisporus   2 2
No Yes Schizophyllum commune   12 12
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Heterobasidion annosum   2 2
No Yes Gloeophyllum trabeumv1.0   1 1
No Yes Fomitiporia mediterranea v1.0   4 4
No Yes Tulasnella calospora AL13/4D v1.0   2 2
No Yes Postia placenta   3 3
No Yes Fomitopsis pinicolav1.0   3 3
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   4 4
No Yes Dichomitus squalens   2 2
No Yes Trametes versicolor v1.0   4 4
No Yes Magnaporthe poae ATCC 64411 22   1 1
No Yes Podospora anserina   1 1
No Yes Glomerella graminicola 22   1 1
No Yes Botrytis cinerea B05.10   5 5
No Yes Sclerotinia sclerotiorum   1 1
No Yes Setosphaeria turcica v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 1 1
No Yes Alternaria brassicicola   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Dictyostelium discoideum   1 1
No Yes Selaginella moellendorffii   21 21
No Yes Pinus taeda Loblolly pine 1 1
No Yes Picea abies Norway spruce 1 1
No Yes Gossypium raimondii v221   10 10
No Yes Carica papaya Papaya 12 12
No Yes Cucumis sativus v122 Cucumber 8 8
No Yes Fragaria vesca Wild strawberry 10 10
No Yes Malus domestica v196 Apple 4 4
No Yes Linum usitatissimum v200 Flax 5 5
No Yes Vitis vinifera Wine grape 3 3
No Yes Actinidia chinensis Hongyang   1 1
No Yes Aquilegia coerulea v195   2 2
No Yes Triticum urartu 22   2 2
No Yes Triticum aestivum 22 Bread wheat 7 7
No Yes Aegilops tauschii 22   6 6
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 1 1
No Yes Panicum virgatum v202 Switchgrass 7 7
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 3 3
No Yes Zea mays v181 Maize 4 4
No Yes Bigelowiella natans CCMP2755 22   2 2
No Yes Cyanophora paradoxa   3 3
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Calothrix sp. PCC 7507   1 1
No Yes Frankia alni ACN14a   1 1
No Yes Kitasatospora setae KM-6054   1 1
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Salinispora arenicola CNS-205   4 4
No Yes Verrucosispora maris AB-18-032   1 1
No Yes Clostridium novyi NT   1 1
No Yes Lysinibacillus sphaericus C3-41   5 5
No Yes Bacillus anthracis str. A0248   1 1
No Yes Fibrella aestuarina   1 1
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Burkholderia glumae BGR1   2 2
No Yes Aeromonas veronii B565   1 1
No Yes Aeromonas salmonicida subsp. salmonicida A449   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   1 1
No Yes Vibrio harveyi ATCC BAA-1116   2 2
No Yes Photobacterium profundum SS9   1 1
No Yes Shewanella denitrificans OS217   1 1
No Yes Shewanella baltica OS185   1 1
No Yes Pseudoalteromonas sp. SM9913   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Marinomonas posidonica IVIA-Po-181   1 1
No Yes Pectobacterium wasabiae WPP163   1 1
No Yes Pseudomonas entomophila L48   1 1
No Yes Francisella cf. novicida 3523   1 1
No Yes Methanosarcina mazei Go1   1 1
No Yes Methanosarcina barkeri str. Fusaro   1 1
No Yes Halogeometricum borinquense DSM 11551   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 7 7
No Yes Ascaris suum Victoria/Ghent Pig roundworm 3 3
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 3 3
No Yes Hordeum vulgare 22 Domesticated barley 10 10
No Yes Prochlorococcus marinus str. MIT 9303   1 1
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Clostridium botulinum BKT015925   4 4
No Yes Enterococcus mundtii QU 25   2 2
No Yes Paenibacillus larvae subsp. larvae DSM 25430   1 1
No Yes Bacillus thuringiensis HD-789   3 3
No Yes Bacillus thuringiensis MC28   4 4
No Yes Bacillus thuringiensis serovar finitimus YBT-020   3 3
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   2 2
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. A2012   1 1
No Yes Echinicola vietnamensis DSM 17526   2 2
No Yes Aeromonas hydrophila ML09-119   1 1
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Shewanella baltica BA175   1 1
No Yes Shewanella baltica OS117   1 1
No Yes Shewanella baltica OS195   1 1
No Yes Shewanella baltica OS155   1 1
No Yes Loa loa v3.3 (Request) Eye worm 5 5
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 6 6
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Moniliophthora perniciosa FA553 (Genome survey)   2 2
No Yes Malus x domestica (Duplicate) Apple 4 4
No Yes Ricinus communis (Early assembly) Castor bean 4 4
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   2 2
No Yes Ornithorhynchus anatinus 69_5 Platypus 1 1
No Yes Petromyzon marinus 69_7.0 Sea lamprey 23 23
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 5 5
No Yes Latimeria chalumnae 69_1 Coelacanth 3 3
No Yes Gadus morhua 69_1 Atlantic cod 6 6
No Yes Takifugu rubripes 69_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 3 3
No Yes Oryzias latipes 69_1 Japanese medaka 2 2
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 2 2
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 8 8
No Yes Danio rerio 69_9 Zebrafish 10 10
No Yes Caenorhabditis elegans 69_215 Roundworm 2 2
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   1 1
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   1 1
No Yes Human Gut Community Subject 8 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes NCBI 2017_08 genome   3215 3207
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   114 114
No Yes Uniprot 2018_03 genome   2849 2840
No Yes Global Ocean Sampling Expedition (GOS)   5 5
No Yes NCBI plasmid sequences (Plasmids)   43 43
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   140 140
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   171 157
No Yes TargetDB (Targets)   3 3
No Yes UniProt viral sequences (Viral)   1 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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