SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


Viral glycoprotein, central and dimerisation domains family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 9 significant domains in 9 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1i9wA   6.83e-159   0.00000478   1-292   1i9w A:1-292  
1ok8A   2.05e-229   0.00000718   1-297   1oke A:1-297  
1p58A   2.12e-229   0.000008   1-297   1oke A:1-297  
1svbA   5.69e-198   0.00000000426   2-302   1svb A:1-302  
1tg8A   1.1e-229   0.000008   1-297   1oke A:1-297  
1tgeA   2.05e-229   0.00000718   1-297   1oke A:1-297  
1urzA   6.02e-198   0.00000000426   2-302   1svb A:1-302  
2alaA   6.83e-159   0.00000478   1-292   1i9w A:1-292  
 
Weak hits:
1ld4M   8.78e-144   0.068   1-292   1i9w A:1-292  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a Viral glycoprotein, central and dimerisation domains domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   35813 35813
No Yes NCBI 2017_08 genome   98 98
No Yes Uniprot 2018_03 genome   25983 25976
No Yes NCBI viral sequences (Viral)   65 65
No Yes PDB chains (SCOP 1.75) (PDB)   9 9
No Yes Protein Data Bank (all PDB sequenc)   107 107
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   405 405
No Yes TargetDB (Targets)   10 10
No Yes UniProt viral sequences (Viral)   9136 9135

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]