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Granulin repeat superfamily domain assignments
in
Homo sapiens 76_38

Assignment details

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Homo sapiens 76_38 has 21 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSP00000053867   0.00000000746   282-310   Granulin repeat  
  0.0000000196   364-392   Granulin repeat  
  0.0000000968   125-154   Granulin repeat  
  0.000000128   207-236   Granulin repeat  
  0.000000235   519-547   Granulin repeat  
  0.000000929   442-470   Granulin repeat  
  0.0615   61-87   Granulin repeat  
ENSP00000465375   0.0000000131   125-154   Granulin repeat  
  0.0235   61-87   Granulin repeat  
ENSP00000465673   0.00000000432   96-124   Granulin repeat  
  0.0000000114   178-206   Granulin repeat  
  0.0000000746   21-50   Granulin repeat  
  0.0000000876   333-361   Granulin repeat  
  0.000000536   256-284   Granulin repeat  
ENSP00000466405   0.000011   125-149   Granulin repeat  
  0.01   61-87   Granulin repeat  
ENSP00000466611   0.000000017   141-170   Granulin repeat  
  0.00824   61-87   Granulin repeat  
ENSP00000467431   0.0000000196   139-167   Granulin repeat  
  0.0235   61-87   Granulin repeat  
ENSP00000467616   0.0000000131   207-235   Granulin repeat  
  0.0000000562   125-154   Granulin repeat  
  0.00000017   362-390   Granulin repeat  
  0.000000628   285-313   Granulin repeat  
  0.0366   61-87   Granulin repeat  
ENSP00000467837   0.0000000119   64-92   Granulin repeat  
  0.0903   2-15   Granulin repeat  
ENSP00000468318   0.000000017   125-154   Granulin repeat  
  0.0159   61-87   Granulin repeat  
 
Weak hits:
ENSP00000392629   0.0432   49-67   Granulin repeat  
ENSP00000410251   0.0922   7-22   Granulin repeat  
ENSP00000463107   0.0294   33-51   Granulin repeat  
ENSP00000465518   0.0192   61-87   Granulin repeat  
ENSP00000466956   0.00608   61-87   Granulin repeat  
ENSP00000467022   0.0188   61-87   Granulin repeat  
ENSP00000467870   0.0108   61-87   Granulin repeat  
  0.0608   125-141   Granulin repeat  

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Select to display   Genome       Domains   Proteins
No Yes ALL   10797 10797
No Yes Homo sapiens 76_38 Human 21 9
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 6 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 6 1
No Yes Pongo abelii 76_2 Sumatran orangutan 5 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 6 1
No Yes Papio anubis 76 Olive baboon 6 1
No Yes Macaca mulatta 76_1 Rhesus monkey 7 2
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 30 6
No Yes Otolemur garnettii 76_3 Small-eared galago 6 1
No Yes Microcebus murinus 76_1 Gray mouse lemur 5 1
No Yes Rattus norvegicus 76_5.0 Norway rat 11 2
No Yes Mus musculus 76_38 House mouse 13 4
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 5 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 6 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 6 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 6 1
No Yes Oryctolagus cuniculus 76_2 Rabbit 12 2
No Yes Ochotona princeps 76 American pika 6 1
No Yes Tupaia belangeri 76 Northern tree shrew 5 1
No Yes Sus scrofa 76_10.2 Pig 6 1
No Yes Bos taurus 76_3.1 Cattle 6 1
No Yes Ovis aries 76_3.1 Sheep 6 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 6 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 6 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 5 1
No Yes Canis familiaris 76_3.1 Dog 5 1
No Yes Felis catus 76_6.2 Domestic cat 6 1
No Yes Equus caballus 76_2 Horse 12 2
No Yes Myotis lucifugus 76_2.0 Little brown bat 6 1
No Yes Pteropus vampyrus 76_1 Large flying fox 6 1
No Yes Erinaceus europaeus 76 Western European hedgehog 3 1
No Yes Procavia capensis 76_1 Cape rock hyrax 6 1
No Yes Loxodonta africana 76_3 African savanna elephant 6 1
No Yes Echinops telfairi 76 Small Madagascar hedgehog 3 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 12 2
No Yes Macropus eugenii 76_1.0 Tammar wallaby 5 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 6 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 6 1
No Yes Ornithorhynchus anatinus 76_5 Platypus 9 3
No Yes Saccoglossus kowalevskii v3.0   9 2
No Yes Petromyzon marinus 76_7.0 Sea lamprey 9 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 4 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 3 1
No Yes Anolis carolinensis 76_2.0 Green anole 6 1
No Yes Xenopus laevis African clawed frog 44 6
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 16 2
No Yes Latimeria chalumnae 76_1 Coelacanth 9 2
No Yes Lepisosteus oculatus 76 Spotted gar 8 3
No Yes Gadus morhua 76_1 Atlantic cod 10 4
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 14 5
No Yes Takifugu rubripes 76_4 Torafugu 28 5
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 29 5
No Yes Oryzias latipes 76_1 Japanese medaka 16 3
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 18 3
No Yes Poecilia formosa 76 Amazon molly 18 3
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 20 5
No Yes Astyanax mexicanus 76 Mexican tetra 27 5
No Yes Danio rerio 76_9 Zebrafish 50 11
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 5 3
No Yes Ciona intestinalis 76 Vase tunicate 5 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 26 1
No Yes Adineta vaga   17 7
No Yes Octopus bimaculoides 280   5 2
No Yes Crassostrea gigas 22 Pacific oyster 11 1
No Yes Lottia gigantea Owl limpet 10 3
No Yes Helobdella robusta   3 1
No Yes Capitella sp. I   12 3
No Yes Daphnia pulex Common water flea 1 1
No Yes Strigamia maritima 22   3 2
No Yes Ixodes scapularis (Preliminary) Black-legged tick 17 4
No Yes Pristionchus pacificus   4 4
No Yes Meloidogyne incognita Southern root-knot nematode 2 2
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis japonica   2 1
No Yes Caenorhabditis brenneri   2 1
No Yes Caenorhabditis remanei   2 1
No Yes Caenorhabditis elegans 76_235 Roundworm 4 2
No Yes Caenorhabditis briggsae 2   2 1
No Yes Trichinella spiralis 22   2 1
No Yes Hymenolepis microstoma   2 2
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   11 3
No Yes Mnemiopsis leidyi Sea walnut 3 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 9 2
No Yes Hydra vulgaris   9 2
No Yes Amphimedon queenslandica   6 1
No Yes Trichoplax adhaerens   6 1
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Monosiga brevicollis   3 1
No Yes Capsaspora owczarzaki ATCC 30864   2 1
No Yes Dictyostelium discoideum   1 1
No Yes Dictyostelium purpureum   1 1
No Yes Selaginella moellendorffii   4 4
No Yes Pinus taeda Loblolly pine 7 7
No Yes Picea abies Norway spruce 6 6
No Yes Eucalyptus grandis v201 Rose gum 8 8
No Yes Theobroma cacao B97-61/B2 v1 Cacao 4 4
No Yes Gossypium raimondii v221   18 18
No Yes Citrus clementina v165   6 6
No Yes Citrus sinensis v154 Sweet orange 15 15
No Yes Thellungiella halophila v173   4 4
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 8 8
No Yes Capsella rubella v183   4 4
No Yes Arabidopsis lyrata Lyrate rockcress 4 4
No Yes Arabidopsis thaliana 10 Thale cress 4 4
No Yes Carica papaya Papaya 3 3
No Yes Medicago truncatula Barrel medic 8 8
No Yes Phaseolus vulgaris v186 French bean 4 4
No Yes Glycine max v109 Soybean 5 5
No Yes Cucumis sativus v122 Cucumber 3 3
No Yes Fragaria vesca Wild strawberry 4 4
No Yes Malus domestica v196 Apple 7 7
No Yes Prunus persica v139 Peach 4 4
No Yes Linum usitatissimum v200 Flax 7 7
No Yes Manihot esculenta v147 Cassava 6 6
No Yes Populus trichocarpa v156 Black cottonwood 7 7
No Yes Vitis vinifera Wine grape 4 4
No Yes Mimulus guttatus v140 Spotted monkey flower 4 4
No Yes Solanum lycopersicum v.2.3 Tomato 6 6
No Yes Solanum tuberosum Potato 10 10
No Yes Actinidia chinensis Hongyang   6 6
No Yes Aquilegia coerulea v195   8 8
No Yes Triticum urartu 22   5 5
No Yes Triticum aestivum 22 Bread wheat 14 14
No Yes Aegilops tauschii 22   6 6
No Yes Brachypodium distachyon Stiff brome 3 3
No Yes Oryza barthii 22 African wild rice 4 4
No Yes Oryza meridionalis 22   4 4
No Yes Oryza glumaepatula 22   4 4
No Yes Oryza glaberrima African rice 4 4
No Yes Oryza punctata 22   4 4
No Yes Oryza nivara 22   5 5
No Yes Oryza brachyantha 22 Malo sina 4 4
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 5 5
No Yes Oryza sativa v193 Rice 5 5
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 6 6
No Yes Panicum virgatum v202 Switchgrass 8 8
No Yes Setaria italica v164 Foxtail millet 5 5
No Yes Zea mays subsp. mays Maize 8 8
No Yes Zea mays v181 Maize 10 10
No Yes Sorghum bicolor Sorghum 3 3
No Yes Musa balbisiana Balbis banana 8 8
No Yes Musa acuminata 22 Wild Malaysian banana 9 9
No Yes Amborella trichopoda 22   3 3
No Yes Physcomitrella patens   5 5
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Chlorella vulgaris   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Cyanophora paradoxa   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 46 4
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 4 2
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 4 4
No Yes Hordeum vulgare 22 Domesticated barley 2 2
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 4 4
No Yes Homo sapiens 75_37 (old version GRC) Human 21 9
No Yes Homo sapiens (NCBI version) Human 6 1
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 6 1
No Yes Loa loa v3.3 (Request) Eye worm 2 2
No Yes Picea sitchensis (Incomplete) Sitka spruce 1 1
No Yes Lotus japonicus (Early assembly)   5 5
No Yes Malus x domestica (Duplicate) Apple 7 7
No Yes Ricinus communis (Early assembly) Castor bean 5 5
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   11 11
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 6 6
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 6 6
No Yes Homo sapiens 69_37 Human 6 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 6 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 6 1
No Yes Pongo abelii 69_2 Sumatran orangutan 5 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 6 1
No Yes Macaca mulatta 69_1 Rhesus monkey 4 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 6 1
No Yes Otolemur garnettii 69_3 Small-eared galago 6 1
No Yes Microcebus murinus 69_1 Gray mouse lemur 5 1
No Yes Rattus norvegicus 69_3.4 Norway rat 6 1
No Yes Mus musculus 69_38 House mouse 6 1
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 5 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 6 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 6 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 6 1
No Yes Ochotona princeps 69 American pika 6 1
No Yes Tupaia belangeri 69 Northern tree shrew 5 1
No Yes Sus scrofa 69_10.2 Pig 6 1
No Yes Bos taurus 69_3.1 Cattle 6 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 6 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 6 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 5 1
No Yes Canis familiaris 69_3.1 Dog 5 1
No Yes Felis catus 69 Domestic cat 6 2
No Yes Equus caballus 69_2 Horse 6 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 6 1
No Yes Pteropus vampyrus 69_1 Large flying fox 6 1
No Yes Erinaceus europaeus 69 Western European hedgehog 3 1
No Yes Procavia capensis 69_1 Cape rock hyrax 6 1
No Yes Loxodonta africana 69_3 African savanna elephant 6 1
No Yes Echinops telfairi 69 Small Madagascar hedgehog 3 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 3 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 5 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 6 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 6 1
No Yes Ornithorhynchus anatinus 69_5 Platypus 5 2
No Yes Petromyzon marinus 69_7.0 Sea lamprey 9 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 4 1
No Yes Anolis carolinensis 69_2.0 Green anole 6 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 9 1
No Yes Latimeria chalumnae 69_1 Coelacanth 9 2
No Yes Gadus morhua 69_1 Atlantic cod 10 4
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 12 4
No Yes Takifugu rubripes 69_4 Torafugu 9 2
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 17 3
No Yes Oryzias latipes 69_1 Japanese medaka 16 3
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 18 3
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 18 3
No Yes Danio rerio 69_9 Zebrafish 23 4
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 5 3
No Yes Ciona intestinalis 69 Vase tunicate 5 2
No Yes Caenorhabditis elegans 69_215 Roundworm 2 1
No Yes Arabidopsis thaliana 10 Thale cress 4 4
No Yes NCBI 2017_08 genome   4592 1166
No Yes STRING v9.0.5 (STRING)   347 99
No Yes Uniprot 2018_03 genome   3311 1382
No Yes PDB chains (SCOP 1.75) (PDB)   4 4
No Yes Protein Data Bank (all PDB sequenc)   10 10
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   13 13
No Yes TargetDB (Targets)   7 2

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