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  Home > Genomes > Caenorhabditis japonica > BPTI-like domains


BPTI-like superfamily domain assignments
in
Caenorhabditis japonica

Assignment details

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Caenorhabditis japonica has 131 significant domains in 42 proteins.

     

Sequence ID   Evalue   Region   Family  
CJA00171   2.84e-16   19-79   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000000142   81-139   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA00496   0.00000000241   151-207   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA00671   1.99e-18   1346-1402   Small Kunitz-type inhibitors & BPTI-like toxins  
  4.4e-17   1475-1530   Small Kunitz-type inhibitors & BPTI-like toxins  
  1.22e-16   1239-1295   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000227   1418-1474   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000241   1121-1179   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000000383   1054-1117   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA00721   1.7e-17   453-515   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000000044   559-623   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.000000000000965   210-277   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000101   365-405   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA01042   7.52e-19   149-205   Small Kunitz-type inhibitors & BPTI-like toxins  
  2.98e-18   83-141   Small Kunitz-type inhibitors & BPTI-like toxins  
  5.53e-17   24-78   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA02458   1.18e-17   13-76   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000132   152-218   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA03415   4.4e-19   522-585   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000184   738-801   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000255   629-693   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000227   302-367   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000017   438-487   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA03635   0.0000000000908   19-79   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA03918   0.00000000131   145-182   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA04562   1.84e-17   584-650   Small Kunitz-type inhibitors & BPTI-like toxins  
  1.32e-16   71-128   Small Kunitz-type inhibitors & BPTI-like toxins  
  1.99e-16   481-546   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000213   690-755   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000000397   171-229   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000017   270-320   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA04726   2.13e-17   16-79   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA04777   0.00000000000354   108-171   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000477   39-104   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA04894   1.23e-17   1930-1992   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA04925   0.000000000000128   160-222   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000101   39-82   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA06203   0.00000000000000568   52-122   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000000156   368-431   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.000000000000369   474-537   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000582   176-228   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000078   261-327   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA06886   0.0000000000000255   20-77   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.000000000000139   153-218   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA07312   0.0000000000000129   20-78   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.000000000000314   120-183   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA07459   1.99e-17   1497-1551   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000355   1290-1345   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.000000000000027   1555-1611   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000341   1357-1415   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.000000000108   1008-1075   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.000000000131   1432-1491   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.000000000142   1148-1207   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000312   1080-1141   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000511   1214-1276   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000312   159-228   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000624   4-43   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.000000184   582-649   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000116   829-898   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000213   329-394   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA07559   3.12e-18   422-484   Small Kunitz-type inhibitors & BPTI-like toxins  
  6.53e-18   216-276   Small Kunitz-type inhibitors & BPTI-like toxins  
  1.09e-17   632-696   Small Kunitz-type inhibitors & BPTI-like toxins  
  1.84e-16   527-592   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000125   864-927   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000426   4-63   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000000255   766-824   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000000809   340-387   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000000993   100-164   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000596   985-1020   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA08401   0.0000000000156   42-107   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA08820   1.32e-19   160-216   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA09420   8.8e-19   451-514   Small Kunitz-type inhibitors & BPTI-like toxins  
  4.97e-16   666-733   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.000000000000213   559-621   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000044   372-416   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000116   227-294   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA10654   0.00000000000000108   36-95   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.000000000000017   102-160   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.000000000312   322-388   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA11984   0.00000000000000993   161-226   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA13420   1.08e-19   551-615   Small Kunitz-type inhibitors & BPTI-like toxins  
  1.84e-17   764-830   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000000017   657-722   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000426   321-392   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.000000000102   472-515   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA13830   0.000000027   4-55   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA13947   2.98e-16   599-660   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000104   854-909   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000118   198-252   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000511   137-192   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000213   785-840   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000397   2-40   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000922   977-1051   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA14700   0.0000000000000653   17-77   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA16648   0.00000000255   746-784   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA16867   0.00000000000000109   19-78   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA16886   0.0000000000000497   23-78   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA17610   1.38e-16   29-96   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA18198   0.00000000000000369   16-76   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA18719   5.25e-19   1121-1180   Small Kunitz-type inhibitors & BPTI-like toxins  
  8.94e-19   2688-2743   Small Kunitz-type inhibitors & BPTI-like toxins  
  1.7e-18   2135-2190   Small Kunitz-type inhibitors & BPTI-like toxins  
  4.82e-18   564-620   Small Kunitz-type inhibitors & BPTI-like toxins  
  5.25e-17   448-505   Small Kunitz-type inhibitors & BPTI-like toxins  
  5.68e-17   840-897   Small Kunitz-type inhibitors & BPTI-like toxins  
  9.36e-17   777-832   Small Kunitz-type inhibitors & BPTI-like toxins  
  1.84e-16   901-955   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000125   2191-2252   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000061   3050-3089   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0383   21-83   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA18769   1.06e-17   223-283   Small Kunitz-type inhibitors & BPTI-like toxins  
  3.55e-17   563-627   Small Kunitz-type inhibitors & BPTI-like toxins  
  1.12e-16   668-730   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000128   342-396   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000129   877-942   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000000255   771-833   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000000156   1002-1060   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000326   455-520   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA19242   0.00000000000139   15-75   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA20284   1.56e-17   32-84   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.000000000000017   137-189   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA21895   1.02e-19   162-225   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000104   87-126   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA22386   1.84e-18   42-99   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA24286   5.39e-21   4-61   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA25093   1.14e-19   406-470   Small Kunitz-type inhibitors & BPTI-like toxins  
  1.18e-16   617-682   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000000044   510-573   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.00000000000596   331-370   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0000000000383   185-251   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA26328   0.00000000000000511   13-76   Small Kunitz-type inhibitors & BPTI-like toxins  
 
Weak hits:
CJA07614   0.00607   588-617   Small Kunitz-type inhibitors & BPTI-like toxins  
CJA07684   0.00119   246-301   Small Kunitz-type inhibitors & BPTI-like toxins  
  0.0255   5-47   Small Kunitz-type inhibitors & BPTI-like toxins  

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Select to display   Genome       Domains   Proteins
No Yes ALL   67676 67676
No Yes Homo sapiens 76_38 Human 88 64
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 23 16
No Yes Gorilla gorilla 76_3.1 Western gorilla 36 26
No Yes Pongo abelii 76_2 Sumatran orangutan 27 18
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 26 18
No Yes Papio anubis 76 Olive baboon 28 20
No Yes Macaca mulatta 76_1 Rhesus monkey 36 25
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 49 35
No Yes Otolemur garnettii 76_3 Small-eared galago 23 14
No Yes Microcebus murinus 76_1 Gray mouse lemur 19 15
No Yes Rattus norvegicus 76_5.0 Norway rat 32 22
No Yes Mus musculus 76_38 House mouse 58 38
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 21 12
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 33 20
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 25 17
No Yes Cavia porcellus 76_3 Domestic guinea pig 34 23
No Yes Oryctolagus cuniculus 76_2 Rabbit 24 17
No Yes Ochotona princeps 76 American pika 22 16
No Yes Tupaia belangeri 76 Northern tree shrew 18 14
No Yes Sus scrofa 76_10.2 Pig 35 26
No Yes Bos taurus 76_3.1 Cattle 38 31
No Yes Ovis aries 76_3.1 Sheep 46 34
No Yes Vicugna pacos 76_1 Alpaca 13 9
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 22 14
No Yes Mustela putorius furo 76_1.0 Domestic ferret 23 16
No Yes Ailuropoda melanoleuca 76_1 Giant panda 26 17
No Yes Canis familiaris 76_3.1 Dog 38 26
No Yes Felis catus 76_6.2 Domestic cat 25 17
No Yes Equus caballus 76_2 Horse 32 23
No Yes Myotis lucifugus 76_2.0 Little brown bat 40 23
No Yes Pteropus vampyrus 76_1 Large flying fox 24 17
No Yes Sorex araneus 76_1 European shrew 32 25
No Yes Erinaceus europaeus 76 Western European hedgehog 28 21
No Yes Procavia capensis 76_1 Cape rock hyrax 22 14
No Yes Loxodonta africana 76_3 African savanna elephant 28 19
No Yes Echinops telfairi 76 Small Madagascar hedgehog 20 14
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 32 20
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 14 11
No Yes Macropus eugenii 76_1.0 Tammar wallaby 24 16
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 31 23
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 23 15
No Yes Ornithorhynchus anatinus 76_5 Platypus 24 13
No Yes Saccoglossus kowalevskii v3.0   104 52
No Yes Petromyzon marinus 76_7.0 Sea lamprey 20 9
No Yes Meleagris gallopavo 76_2 Turkey 23 16
No Yes Gallus gallus 76_4 Chicken 21 13
No Yes Anas platyrhynchos 76_1.0 Mallard 19 13
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 22 14
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 25 16
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 29 15
No Yes Anolis carolinensis 76_2.0 Green anole 63 35
No Yes Xenopus laevis African clawed frog 30 17
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 24 15
No Yes Latimeria chalumnae 76_1 Coelacanth 22 14
No Yes Lepisosteus oculatus 76 Spotted gar 41 24
No Yes Gadus morhua 76_1 Atlantic cod 27 18
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 39 26
No Yes Takifugu rubripes 76_4 Torafugu 98 59
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 51 29
No Yes Oryzias latipes 76_1 Japanese medaka 34 21
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 31 19
No Yes Poecilia formosa 76 Amazon molly 37 25
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 40 25
No Yes Astyanax mexicanus 76 Mexican tetra 48 30
No Yes Danio rerio 76_9 Zebrafish 54 35
No Yes Oikopleura dioica   7 5
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 9 5
No Yes Ciona intestinalis 76 Vase tunicate 14 7
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 16 8
No Yes Adineta vaga   37 22
No Yes Octopus bimaculoides 280   31 11
No Yes Crassostrea gigas 22 Pacific oyster 51 27
No Yes Lottia gigantea Owl limpet 48 27
No Yes Helobdella robusta   18 8
No Yes Capitella sp. I   72 38
No Yes Danaus plexippus OGS1.0 Monarch butterfly 27 12
No Yes Heliconius melpomene Postman butterfly 18 8
No Yes Bombyx mori Domestic silkworm 17 7
No Yes Nasonia vitripennis Jewel wasp 15 6
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 52 15
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 17 7
No Yes Linepithema humile v1.1 Argentine ant 12 6
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 8 7
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 16 6
No Yes Atta cephalotes v1.1   11 5
No Yes Camponotus floridanus v3.3 Florida carpenter ant 15 5
No Yes Lucilia cuprina Australian sheep blowfly 66 30
No Yes Drosophila grimshawi 1.3   45 34
No Yes Drosophila willistoni 1.3   36 24
No Yes Drosophila pseudoobscura 2.13   60 39
No Yes Drosophila persimilis 1.3   43 32
No Yes Drosophila suzukii   57 34
No Yes Drosophila yakuba 1.3   39 28
No Yes Drosophila simulans 1.3   40 28
No Yes Drosophila sechellia 1.3   39 26
No Yes Drosophila melanogaster 76_5 Fruit fly 90 58
No Yes Drosophila erecta 1.3   42 30
No Yes Drosophila ananassae 1.3   43 31
No Yes Drosophila virilis 1.2   39 28
No Yes Drosophila mojavensis 1.3   39 28
No Yes Megaselia scalaris 22   10 10
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 14 5
No Yes Culex pipiens quinquefasciatus Southern house mosquito 14 5
No Yes Anopheles darlingi 22 American malaria mosquito 10 4
No Yes Anopheles gambiae 49_3j African malaria mosquito 8 6
No Yes Tribolium castaneum 3.0 Red flour beetle 18 6
No Yes Pediculus humanus corporis (Early assembly) Human body louse 17 4
No Yes Acyrthosiphon pisum Pea aphid 11 3
No Yes Rhodnius prolixus 22   12 3
No Yes Daphnia pulex Common water flea 68 30
No Yes Strigamia maritima 22   31 7
No Yes Sarcoptes scabiei   11 2
No Yes Tetranychus urticae Two-spotted spider mite 7 6
No Yes Ixodes scapularis (Preliminary) Black-legged tick 138 90
No Yes Pristionchus pacificus   80 30
No Yes Meloidogyne incognita Southern root-knot nematode 101 33
No Yes Meloidogyne hapla   43 17
No Yes Onchocerca volvulus 22   70 16
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 167 29
No Yes Caenorhabditis japonica   131 42
No Yes Caenorhabditis brenneri   150 49
No Yes Caenorhabditis remanei   144 48
No Yes Caenorhabditis elegans 76_235 Roundworm 510 78
No Yes Caenorhabditis briggsae 2   138 44
No Yes Trichinella spiralis 22   92 20
No Yes Hymenolepis microstoma   51 16
No Yes Echinococcus multilocularis   44 21
No Yes Echinococcus granulosus   45 22
No Yes Taenia solium Pork tapeworm 44 26
No Yes Schistosoma mansoni   23 12
No Yes Thelohanellus kitauei   28 24
No Yes Acropora digitifera v1.0   19 12
No Yes Nematostella vectensis 1.0 Starlet sea anemone 24 24
No Yes Hydra vulgaris   15 9
No Yes Amphimedon queenslandica   21 13
No Yes Proterospongia sp. ATCC 50818   7 7
No Yes Monosiga brevicollis   2 2
No Yes Chlorella variabilis sp. NC64A   2 2
No Yes Volvox carteri f. nagariensis   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Maribacter sp. HTCC2170   1 1
No Yes Syntrophus aciditrophicus SB   1 1
No Yes Hippea maritima DSM 10411   1 1
No Yes Geobacter lovleyi SZ   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Pelobacter propionicus DSM 2379   1 1
No Yes Sorangium cellulosum 'So ce 56'   2 2
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Thiocystis violascens DSM 198   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 37 20
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 77 45
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 15 6
No Yes Ascaris suum Victoria/Ghent Pig roundworm 97 34
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 336 57
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Thioflavicoccus mobilis 8321   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 98 73
No Yes Homo sapiens (NCBI version) Human 43 31
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 29 20
No Yes Loa loa v3.3 (Request) Eye worm 76 22
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 67 39
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 55 12
No Yes Homo sapiens 69_37 Human 29 20
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 23 16
No Yes Gorilla gorilla 69_3.1 Western gorilla 29 20
No Yes Pongo abelii 69_2 Sumatran orangutan 27 18
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 25 17
No Yes Macaca mulatta 69_1 Rhesus monkey 29 19
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 26 18
No Yes Otolemur garnettii 69_3 Small-eared galago 23 14
No Yes Microcebus murinus 69_1 Gray mouse lemur 19 15
No Yes Rattus norvegicus 69_3.4 Norway rat 28 19
No Yes Mus musculus 69_38 House mouse 29 20
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 21 12
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 24 15
No Yes Cavia porcellus 69_3 Domestic guinea pig 33 22
No Yes Oryctolagus cuniculus 69_2 Rabbit 22 16
No Yes Ochotona princeps 69 American pika 22 16
No Yes Tupaia belangeri 69 Northern tree shrew 18 14
No Yes Sus scrofa 69_10.2 Pig 29 21
No Yes Bos taurus 69_3.1 Cattle 32 25
No Yes Vicugna pacos 69_1 Alpaca 13 9
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 22 14
No Yes Mustela putorius furo 69_1.0 Domestic ferret 23 16
No Yes Ailuropoda melanoleuca 69_1 Giant panda 25 16
No Yes Canis familiaris 69_3.1 Dog 27 18
No Yes Felis catus 69 Domestic cat 19 14
No Yes Equus caballus 69_2 Horse 27 18
No Yes Myotis lucifugus 69_2.0 Little brown bat 37 20
No Yes Pteropus vampyrus 69_1 Large flying fox 24 17
No Yes Sorex araneus 69_1 European shrew 32 25
No Yes Erinaceus europaeus 69 Western European hedgehog 28 21
No Yes Procavia capensis 69_1 Cape rock hyrax 22 14
No Yes Loxodonta africana 69_3 African savanna elephant 26 17
No Yes Echinops telfairi 69 Small Madagascar hedgehog 20 14
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 21 14
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 14 11
No Yes Macropus eugenii 69_1.0 Tammar wallaby 24 16
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 28 20
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 23 15
No Yes Ornithorhynchus anatinus 69_5 Platypus 22 12
No Yes Petromyzon marinus 69_7.0 Sea lamprey 17 8
No Yes Meleagris gallopavo 69_2 Turkey 21 14
No Yes Gallus gallus 69_2 Chicken 22 14
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 21 13
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 26 13
No Yes Anolis carolinensis 69_2.0 Green anole 54 30
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 21 13
No Yes Latimeria chalumnae 69_1 Coelacanth 20 12
No Yes Gadus morhua 69_1 Atlantic cod 27 18
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 31 19
No Yes Takifugu rubripes 69_4 Torafugu 30 19
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 32 20
No Yes Oryzias latipes 69_1 Japanese medaka 29 19
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 31 19
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 34 20
No Yes Danio rerio 69_9 Zebrafish 40 25
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 4 2
No Yes Ciona intestinalis 69 Vase tunicate 14 7
No Yes Drosophila melanogaster 69_5 Fruit fly 55 44
No Yes Caenorhabditis elegans 69_215 Roundworm 141 38
No Yes 5_Below_upper_mesopelagic (meta-genome)   1 1
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   1 1
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   1 1
No Yes NCBI 2017_08 genome   19734 10885
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   2017 1080
No Yes Uniprot 2018_03 genome   31727 13818
No Yes Global Ocean Sampling Expedition (GOS)   21 21
No Yes NCBI viral sequences (Viral)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   59 57
No Yes Protein Data Bank (all PDB sequenc)   350 340
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   839 838
No Yes TargetDB (Targets)   69 32
No Yes UniProt viral sequences (Viral)   1 1

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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