SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


Defensin family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 5 significant domains in 5 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1ahlA   9.43e-20   0.0000305   1-49   1ahl A:  
1apfA   3.62e-19   0.0000262   1-49   1apf A:  
1atxA   5.47e-19   0.0000481   1-46   1atx A:  
1bdsA   2.02e-21   0.0000468   1-43   1bds A:  
1zueA   4.97e-29   0.0000665   1-42   1d6b A:  
2sh1A   1.09e-18   0.0000567   2-47   1sh1 A:  
 
Weak hits:
1b8wA   2.61e-21   0.00029   1-42   1b8w A:  
1bnbA   3.16e-16   0.00088   3-36   1bnb A:  
1dfnA   0.00000000000000449   0.00026   2-30   1dfn A:  
1e4qA   0.0000000000000225   0.0004   1-37   1fd3 A:  
1e4rA   0.0000000000337   0.00065   1-35   1e4r A:  
1e4tA   0.000000000145   0.00098   2-36   1e4t A:  
1ewsA   2.36e-20   0.00018   1-32   1ews A:  
1fd3A   2.06e-16   0.00025   1-41   1fd3 A:  
1ijvA   2.99e-19   0.00039   1-36   1e4s A:  
1kj6A   0.0000000000262   0.00055   2-44   1kj6 A:  
1tv0A   0.00000000000449   0.00022   2-32   1tv0 A:  
1ut3A   0.00000000000484   0.00047   3-38   1ut3 A:  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a Defensin domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   100 100
No Yes Uniprot 2018_03 genome   60 60
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   11 11
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   24 24

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]