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  Home > Genomes > Medicago truncatula > Thyroglobulin type-1 domain domains


Thyroglobulin type-1 domain superfamily domain assignments
in
Medicago truncatula


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View all assignments containing a Thyroglobulin type-1 domain domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   36883 36883
No Yes Homo sapiens 76_38 Human 75 55
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 22 16
No Yes Gorilla gorilla 76_3.1 Western gorilla 44 21
No Yes Pongo abelii 76_2 Sumatran orangutan 27 15
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 24 16
No Yes Papio anubis 76 Olive baboon 35 22
No Yes Macaca mulatta 76_1 Rhesus monkey 27 23
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 56 40
No Yes Otolemur garnettii 76_3 Small-eared galago 31 18
No Yes Microcebus murinus 76_1 Gray mouse lemur 27 15
No Yes Rattus norvegicus 76_5.0 Norway rat 30 17
No Yes Mus musculus 76_38 House mouse 47 32
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 23 15
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 30 17
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 31 17
No Yes Cavia porcellus 76_3 Domestic guinea pig 29 18
No Yes Oryctolagus cuniculus 76_2 Rabbit 22 19
No Yes Ochotona princeps 76 American pika 26 14
No Yes Tupaia belangeri 76 Northern tree shrew 22 12
No Yes Sus scrofa 76_10.2 Pig 42 20
No Yes Bos taurus 76_3.1 Cattle 27 15
No Yes Ovis aries 76_3.1 Sheep 26 20
No Yes Vicugna pacos 76_1 Alpaca 6 5
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 26 16
No Yes Mustela putorius furo 76_1.0 Domestic ferret 30 17
No Yes Ailuropoda melanoleuca 76_1 Giant panda 29 19
No Yes Canis familiaris 76_3.1 Dog 45 21
No Yes Felis catus 76_6.2 Domestic cat 29 16
No Yes Equus caballus 76_2 Horse 28 15
No Yes Myotis lucifugus 76_2.0 Little brown bat 26 14
No Yes Pteropus vampyrus 76_1 Large flying fox 28 16
No Yes Sorex araneus 76_1 European shrew 17 10
No Yes Erinaceus europaeus 76 Western European hedgehog 21 13
No Yes Procavia capensis 76_1 Cape rock hyrax 25 16
No Yes Loxodonta africana 76_3 African savanna elephant 33 19
No Yes Echinops telfairi 76 Small Madagascar hedgehog 26 15
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 35 22
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 16 8
No Yes Macropus eugenii 76_1.0 Tammar wallaby 24 14
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 27 14
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 28 17
No Yes Ornithorhynchus anatinus 76_5 Platypus 24 13
No Yes Saccoglossus kowalevskii v3.0   234 55
No Yes Petromyzon marinus 76_7.0 Sea lamprey 16 8
No Yes Meleagris gallopavo 76_2 Turkey 15 14
No Yes Gallus gallus 76_4 Chicken 28 16
No Yes Anas platyrhynchos 76_1.0 Mallard 27 15
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 24 16
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 29 15
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 31 18
No Yes Anolis carolinensis 76_2.0 Green anole 32 18
No Yes Xenopus laevis African clawed frog 31 23
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 30 18
No Yes Latimeria chalumnae 76_1 Coelacanth 28 19
No Yes Lepisosteus oculatus 76 Spotted gar 39 22
No Yes Gadus morhua 76_1 Atlantic cod 31 24
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 26 24
No Yes Takifugu rubripes 76_4 Torafugu 144 108
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 38 34
No Yes Oryzias latipes 76_1 Japanese medaka 44 31
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 32 22
No Yes Poecilia formosa 76 Amazon molly 26 20
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 46 32
No Yes Astyanax mexicanus 76 Mexican tetra 32 21
No Yes Danio rerio 76_9 Zebrafish 61 36
No Yes Oikopleura dioica   21 15
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 15 10
No Yes Ciona intestinalis 76 Vase tunicate 14 9
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 21 10
No Yes Octopus bimaculoides 280   14 12
No Yes Crassostrea gigas 22 Pacific oyster 9 6
No Yes Lottia gigantea Owl limpet 7 4
No Yes Helobdella robusta   5 5
No Yes Capitella sp. I   3 3
No Yes Danaus plexippus OGS1.0 Monarch butterfly 18 7
No Yes Heliconius melpomene Postman butterfly 14 6
No Yes Bombyx mori Domestic silkworm 10 5
No Yes Nasonia vitripennis Jewel wasp 13 4
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 11 4
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 9 3
No Yes Linepithema humile v1.1 Argentine ant 6 4
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 5 4
No Yes Solenopsis invicta v.2.2.3 Red fire ant 4 3
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 9 3
No Yes Atta cephalotes v1.1   5 4
No Yes Camponotus floridanus v3.3 Florida carpenter ant 9 4
No Yes Lucilia cuprina Australian sheep blowfly 9 3
No Yes Drosophila grimshawi 1.3   9 3
No Yes Drosophila willistoni 1.3   9 3
No Yes Drosophila pseudoobscura 2.13   9 3
No Yes Drosophila persimilis 1.3   8 3
No Yes Drosophila suzukii   9 4
No Yes Drosophila yakuba 1.3   9 3
No Yes Drosophila simulans 1.3   9 3
No Yes Drosophila sechellia 1.3   9 3
No Yes Drosophila melanogaster 76_5 Fruit fly 18 8
No Yes Drosophila erecta 1.3   8 2
No Yes Drosophila ananassae 1.3   9 3
No Yes Drosophila virilis 1.2   9 3
No Yes Drosophila mojavensis 1.3   9 3
No Yes Megaselia scalaris 22   5 3
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 16 6
No Yes Culex pipiens quinquefasciatus Southern house mosquito 14 5
No Yes Anopheles darlingi 22 American malaria mosquito 7 3
No Yes Anopheles gambiae 49_3j African malaria mosquito 22 8
No Yes Tribolium castaneum 3.0 Red flour beetle 14 5
No Yes Pediculus humanus corporis (Early assembly) Human body louse 4 3
No Yes Acyrthosiphon pisum Pea aphid 3 2
No Yes Rhodnius prolixus 22   2 2
No Yes Daphnia pulex Common water flea 18 7
No Yes Strigamia maritima 22   27 8
No Yes Sarcoptes scabiei   10 5
No Yes Tetranychus urticae Two-spotted spider mite 13 5
No Yes Ixodes scapularis (Preliminary) Black-legged tick 8 4
No Yes Pristionchus pacificus   8 6
No Yes Meloidogyne incognita Southern root-knot nematode 4 4
No Yes Onchocerca volvulus 22   8 7
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 10 9
No Yes Caenorhabditis japonica   12 6
No Yes Caenorhabditis brenneri   4 4
No Yes Caenorhabditis remanei   14 7
No Yes Caenorhabditis elegans 76_235 Roundworm 24 18
No Yes Caenorhabditis briggsae 2   13 7
No Yes Trichinella spiralis 22   11 8
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   1 1
No Yes Echinococcus granulosus   1 1
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   1 1
No Yes Mnemiopsis leidyi Sea walnut 62 16
No Yes Acropora digitifera v1.0   83 9
No Yes Nematostella vectensis 1.0 Starlet sea anemone 49 19
No Yes Hydra vulgaris   14 7
No Yes Amphimedon queenslandica   9 4
No Yes Trichoplax adhaerens   6 2
No Yes Symbiodinium minutum clade B1 v1.2   3 3
No Yes Coxiella burnetii Dugway 5J108-111   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 39 25
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 18 8
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 23 9
No Yes Ascaris suum Victoria/Ghent Pig roundworm 10 5
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 17 11
No Yes Coxiella burnetii CbuK_Q154   1 1
No Yes Coxiella burnetii CbuG_Q212   1 1
No Yes Coxiella burnetii RSA 331   1 1
No Yes Coxiella burnetii RSA 493   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 84 56
No Yes Homo sapiens (NCBI version) Human 42 27
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 30 17
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 8 7
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 5 5
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 4 4
No Yes Homo sapiens 69_37 Human 31 18
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 22 16
No Yes Gorilla gorilla 69_3.1 Western gorilla 28 15
No Yes Pongo abelii 69_2 Sumatran orangutan 27 15
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 24 17
No Yes Macaca mulatta 69_1 Rhesus monkey 21 18
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 29 17
No Yes Otolemur garnettii 69_3 Small-eared galago 31 18
No Yes Microcebus murinus 69_1 Gray mouse lemur 27 15
No Yes Rattus norvegicus 69_3.4 Norway rat 30 17
No Yes Mus musculus 69_38 House mouse 31 18
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 23 15
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 30 17
No Yes Cavia porcellus 69_3 Domestic guinea pig 28 17
No Yes Oryctolagus cuniculus 69_2 Rabbit 21 18
No Yes Ochotona princeps 69 American pika 26 14
No Yes Tupaia belangeri 69 Northern tree shrew 22 12
No Yes Sus scrofa 69_10.2 Pig 30 18
No Yes Bos taurus 69_3.1 Cattle 27 15
No Yes Vicugna pacos 69_1 Alpaca 6 5
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 26 16
No Yes Mustela putorius furo 69_1.0 Domestic ferret 30 17
No Yes Ailuropoda melanoleuca 69_1 Giant panda 22 17
No Yes Canis familiaris 69_3.1 Dog 40 17
No Yes Felis catus 69 Domestic cat 24 15
No Yes Equus caballus 69_2 Horse 27 14
No Yes Myotis lucifugus 69_2.0 Little brown bat 26 14
No Yes Pteropus vampyrus 69_1 Large flying fox 28 16
No Yes Sorex araneus 69_1 European shrew 17 10
No Yes Erinaceus europaeus 69 Western European hedgehog 21 13
No Yes Procavia capensis 69_1 Cape rock hyrax 25 16
No Yes Loxodonta africana 69_3 African savanna elephant 30 17
No Yes Echinops telfairi 69 Small Madagascar hedgehog 26 15
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 19 15
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 16 8
No Yes Macropus eugenii 69_1.0 Tammar wallaby 24 14
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 24 12
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 28 17
No Yes Ornithorhynchus anatinus 69_5 Platypus 22 11
No Yes Petromyzon marinus 69_7.0 Sea lamprey 16 8
No Yes Meleagris gallopavo 69_2 Turkey 14 13
No Yes Gallus gallus 69_2 Chicken 27 15
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 24 16
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 27 15
No Yes Anolis carolinensis 69_2.0 Green anole 30 17
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 26 14
No Yes Latimeria chalumnae 69_1 Coelacanth 21 14
No Yes Gadus morhua 69_1 Atlantic cod 25 21
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 25 23
No Yes Takifugu rubripes 69_4 Torafugu 34 22
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 27 23
No Yes Oryzias latipes 69_1 Japanese medaka 34 22
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 32 22
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 37 25
No Yes Danio rerio 69_9 Zebrafish 33 23
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 8 6
No Yes Ciona intestinalis 69 Vase tunicate 14 9
No Yes Drosophila melanogaster 69_5 Fruit fly 9 3
No Yes Caenorhabditis elegans 69_215 Roundworm 12 6
No Yes NCBI 2017_08 genome   14400 7232
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   1067 602
No Yes Uniprot 2018_03 genome   13614 6094
No Yes Global Ocean Sampling Expedition (GOS)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   12 12
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   29 29
No Yes TargetDB (Targets)   9 8

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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