SUPERFAMILY 1.75 HMM library and genome assignments server

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HIPIP (high potential iron protein) superfamily domain assignments
in
Echinops telfairi 76


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Select to display   Genome       Domains   Proteins
No Yes ALL   6841 6841
No Yes Frankia symbiont of Datisca glomerata   1 1
No Yes Frankia sp. EAN1pec   1 1
No Yes Frankia alni ACN14a   1 1
No Yes Chlorobium limicola DSM 245   1 1
No Yes Chlorobaculum parvum NCIB 8327   1 1
No Yes Chloroherpeton thalassium ATCC 35110   1 1
No Yes Rhodothermus marinus DSM 4252   1 1
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Pedobacter heparinus DSM 2366   2 2
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'   1 1
No Yes Dictyoglomus thermophilum H-6-12   1 1
No Yes Acidithiobacillus ferrivorans SS3   2 2
No Yes Acidithiobacillus caldus SM-1   2 2
No Yes Acidithiobacillus ferrooxidans ATCC 53993   2 2
No Yes Bdellovibrio bacteriovorus HD100   1 1
No Yes uncultured Sulfuricurvum sp. RIFRC-1   1 1
No Yes Sulfurimonas denitrificans DSM 1251   1 1
No Yes Haliangium ochraceum DSM 14365   1 1
No Yes beta proteobacterium CB   2 2
No Yes Methylibium petroleiphilum PM1   1 1
No Yes Thiomonas arsenitoxydans   1 1
No Yes Thiomonas intermedia K12   1 1
No Yes Rubrivivax gelatinosus IL144   1 1
No Yes Burkholderia phytofirmans PsJN   2 2
No Yes Burkholderia phymatum STM815   2 2
No Yes Burkholderia xenovorans LB400   2 2
No Yes Ralstonia eutropha JMP134   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Ralstonia pickettii 12D   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1   2 2
No Yes Burkholderia sp. RPE64   2 2
No Yes Burkholderia sp. CCGE1002   5 5
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia mallei SAVP1   1 1
No Yes Burkholderia ambifaria AMMD   3 3
No Yes Burkholderia cenocepacia HI2424   2 2
No Yes Burkholderia multivorans ATCC 17616   2 2
No Yes Burkholderia vietnamiensis G4   3 3
No Yes Burkholderia gladioli BSR3   1 1
No Yes Burkholderia glumae BGR1   1 1
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Variovorax paradoxus S110   1 1
No Yes Rhodoferax ferrireducens T118   1 1
No Yes Acidiphilium multivorum AIU301   2 2
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Rhodomicrobium vannielii ATCC 17100   2 2
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Methylocystis sp. SC2   1 1
No Yes Cellvibrio japonicus Ueda107   1 1
No Yes Photobacterium profundum SS9   1 1
No Yes Glaciecola nitratireducens FR1064   1 1
No Yes Marinobacter sp. BSs20148   1 1
No Yes Alteromonas sp. SN2   1 1
No Yes Alteromonas macleodii str. 'Deep ecotype'   1 1
No Yes Marinomonas mediterranea MMB-1   1 1
No Yes Rhodanobacter denitrificans   1 1
No Yes Frateuria aurantia DSM 6220   1 1
No Yes Halothiobacillus neapolitanus c2   1 1
No Yes Spiribacter sp. UAH-SP71   1 1
No Yes Alkalilimnicola ehrlichii MLHE-1   2 2
No Yes Thioalkalivibrio sulfidophilus HL-EbGr7   1 1
No Yes Thioalkalivibrio sp. K90mix   1 1
No Yes Halorhodospira halophila SL1   4 4
No Yes Allochromatium vinosum DSM 180   1 1
No Yes Thiocystis violascens DSM 198   1 1
No Yes Haloterrigena turkmenica DSM 5511   1 1
No Yes Haloferax mediterranei ATCC 33500   2 2
No Yes Haloferax volcanii DS2   1 1
No Yes Natronomonas pharaonis DSM 2160   1 1
No Yes Frankia sp. EuI1c   1 1
No Yes Frankia sp. CcI3   1 1
No Yes Salinibacter ruber DSM 13855   1 1
No Yes Rhodothermus marinus SG0.5JP17-172   1 1
No Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'   1 1
No Yes Leptospirillum ferriphilum ML-04   2 2
No Yes Acidithiobacillus ferrooxidans ATCC 23270   2 2
No Yes Bdellovibrio exovorus JSS   1 1
No Yes Bdellovibrio bacteriovorus str. Tiberius   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Burkholderia phenoliruptrix BR3459a   2 2
No Yes Ralstonia pickettii 12J   1 1
No Yes Ralstonia solanacearum FQY_4   2 2
No Yes Ralstonia solanacearum Po82   2 2
No Yes Ralstonia solanacearum PSI07   2 2
No Yes Ralstonia solanacearum CMR15   2 2
No Yes Ralstonia solanacearum GMI1000   2 2
No Yes Polynucleobacter necessarius subsp. necessarius STIR1   2 2
No Yes Burkholderia sp. YI23   2 2
No Yes Burkholderia sp. CCGE1003   2 2
No Yes Burkholderia sp. CCGE1001   2 2
No Yes Burkholderia sp. KJ006   2 2
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Burkholderia lata   2 2
No Yes Burkholderia ambifaria MC40-6   3 3
No Yes Burkholderia cenocepacia MC0-3   2 2
No Yes Burkholderia cenocepacia AU 1054   2 2
No Yes Burkholderia cenocepacia J2315   2 2
No Yes Burkholderia multivorans ATCC 17616   2 2
No Yes Burkholderia cepacia GG4   2 2
No Yes Variovorax paradoxus B4   1 1
No Yes Nitrosomonas sp. AL212   1 1
No Yes Rhodopseudomonas palustris DX-1   2 2
No Yes Rhodopseudomonas palustris TIE-1   2 2
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris CGA009   2 2
No Yes Glaciecola psychrophila 170   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   1 1
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   1 1
No Yes Alteromonas macleodii str. 'English Channel 615'   1 1
No Yes Alteromonas macleodii AltDE1   1 1
No Yes Alteromonas macleodii str. 'English Channel 673'   1 1
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   1 1
No Yes Alteromonas macleodii str. 'Black Sea 11'   1 1
No Yes Alteromonas macleodii ATCC 27126   1 1
No Yes Spiribacter salinus M19-40   1 1
No Yes Thioflavicoccus mobilis 8321   1 1
No Yes Halovivax ruber XH-70   1 1
No Yes Natronomonas moolapensis 8.8.11   1 1
No Yes 5_050719P (meta-genome)   1 1
No Yes Combined (meta-genome)   2 2
No Yes Dump bottom (Dump bottom) (meta-genome)   13 13
No Yes Dump top (Dump top) (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   3 3
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   4 4
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   4438 4432
No Yes Nymph Lake Bulk Water (meta-genome)   1 1
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   7 7
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   6 6
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   3 3
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   7 7
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   8 8
No Yes STRING v9.0.5 (STRING)   92 92
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   1 1
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   1711 1706
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   4 4
No Yes Global Ocean Sampling Expedition (GOS)   61 61
No Yes NCBI plasmid sequences (Plasmids)   8 8
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   12 12
No Yes Protein Data Bank (all PDB sequenc)   35 35
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   102 102

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