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Influenza hemagglutinin (stalk) family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

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PDB chains (SCOP 1.75) (PDB) has 18 significant domains in 18 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1flcB   5.35e-98   0.0000000327   4-165   1flc F:  
1ha0A   4.1e-87   0.00000000967   322-494   1ha0 A:330-502  
1htmB   2.54e-64   0.000000104   1-138   1qu1 C:  
1jsdB   6.58e-88   0.0000000204   1-175   1jsi B:  
1jsmB   3.44e-92   0.00000000958   1-175   2fk0 B:1-175  
1mqmB   2.64e-88   0.0000000123   1-175   1ha0 A:330-502  
1qu1A   4.84e-67   0.0000000505   6-154   1qu1 C:  
1rd8B   3.97e-92   0.00000000754   1-175   1rd8 B:  
1ruyI   4.84e-87   0.0000000231   1-159   1ru7 H:  
1ruzI   3.17e-87   0.0000000188   1-159   1rd8 B:  
1rv0I   8.79e-87   0.0000000239   1-159   1rd8 B:  
1rvxB   2.27e-85   0.0000000184   1-159   1ru7 H:  
1ti8B   3.41e-86   0.0000000137   1-171   1ti8 B:1-166  
2fk0B   1.22e-92   0.00000000813   1-174   2fk0 B:1-175  
2ibxB   8.16e-88   0.0000000184   1-159   2fk0 B:1-175  
2rftB   1.46e-66   0.000000023   1-170    
2viuB   3.41e-89   0.0000000102   1-175   1ha0 A:330-502  
5hmgB   3.65e-88   0.000000011   1-175   1ha0 A:330-502  
 
Weak hits:
1ibnA   0.0000000133   0.0017   1-20   1ha0 A:330-502  
1xooA   0.0000000171   0.002   2-20   1ha0 A:330-502  
1xopA   0.0000000276   0.002   2-20   1ha0 A:330-502  
2dciA   0.000000638   0.0025   1-20   1ha0 A:330-502  

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Select to display   Genome       Domains   Proteins
No Yes ALL   116323 116323
No Yes NCBI 2017_08 genome   18 18
No Yes Uniprot 2018_03 genome   95335 95335
No Yes NCBI viral sequences (Viral)   7 7
No Yes PDB chains (SCOP 1.75) (PDB)   18 18
No Yes Protein Data Bank (all PDB sequenc)   1162 1160
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   1566 1566
No Yes UniProt viral sequences (Viral)   18217 18217

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