SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Clostridium neurotoxins, "coiled-coil" domain domains in all bacterial and archaeal genomes


Clostridium neurotoxins, "coiled-coil" domain superfamily domain assignments
in
all bacterial and archaeal genomes

Network of domain occurrence in all genomes

Assignment details

(show help)

14 selected genomes have 28 significant domains in 28 proteins.


Clostridium tetani E88 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|28373188|ref|NP_783831.1|   2.62e-116   559-884   Clostridium neurotoxins, "coiled-coil" domain  

Clostridium botulinum A str. ATCC 3502 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|148378800|ref|YP_001253341.1|   1.44e-119   498-830   Clostridium neurotoxins, "coiled-coil" domain  
gi|148378801|ref|YP_001253342.1|   1.18e-123   549-874   Clostridium neurotoxins, "coiled-coil" domain  

Clostridium tetani genome 12124569 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|557606997|ref|YP_008774963.1|   1.57e-116   559-884   Clostridium neurotoxins, "coiled-coil" domain  

Clostridium botulinum H04402 065 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|387817074|ref|YP_005677418.1|   3.92e-120   498-830   Clostridium neurotoxins, "coiled-coil" domain  
gi|387817075|ref|YP_005677419.1|   6.02e-122   549-874   Clostridium neurotoxins, "coiled-coil" domain  

Clostridium botulinum BKT015925 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|331270959|ref|YP_004385670.1|   1.57e-113   499-828   Clostridium neurotoxins, "coiled-coil" domain  
gi|331270960|ref|YP_004385671.1|   3.66e-111   545-869   Clostridium neurotoxins, "coiled-coil" domain  

Clostridium botulinum F str. 230613 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|384461195|ref|YP_005673790.1|   1.15e-117   465-796   Clostridium neurotoxins, "coiled-coil" domain  
gi|384461196|ref|YP_005673791.1|   4.45e-126   537-867   Clostridium neurotoxins, "coiled-coil" domain  

Clostridium botulinum F str. Langeland has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|153938941|ref|YP_001390122.1|   1.15e-117   465-796   Clostridium neurotoxins, "coiled-coil" domain  
gi|153939808|ref|YP_001390123.1|   4.45e-126   537-867   Clostridium neurotoxins, "coiled-coil" domain  

Clostridium botulinum E3 str. Alaska E43 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|188589186|ref|YP_001920505.1|   6.81e-118   465-795   Clostridium neurotoxins, "coiled-coil" domain  
gi|188590132|ref|YP_001920504.1|   3.66e-128   518-848   Clostridium neurotoxins, "coiled-coil" domain  

Clostridium botulinum B1 str. Okra has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|169834607|ref|YP_001693307.1|   3.79e-126   536-861   Clostridium neurotoxins, "coiled-coil" domain  
gi|169834701|ref|YP_001693308.1|   6.28e-118   498-828   Clostridium neurotoxins, "coiled-coil" domain  

Clostridium botulinum Ba4 str. 657 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|229587275|ref|YP_002860313.1|   1.7e-114   549-875   Clostridium neurotoxins, "coiled-coil" domain  
gi|229587276|ref|YP_002860314.1|   9.29e-119   465-796   Clostridium neurotoxins, "coiled-coil" domain  
gi|229587402|ref|YP_002860440.1|   1.14e-126   536-861   Clostridium neurotoxins, "coiled-coil" domain  
gi|229587403|ref|YP_002860441.1|   6.28e-118   498-828   Clostridium neurotoxins, "coiled-coil" domain  

Clostridium botulinum A2 str. Kyoto has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|226948035|ref|YP_002803126.1|   4.71e-120   465-796   Clostridium neurotoxins, "coiled-coil" domain  
gi|226948036|ref|YP_002803127.1|   3.14e-111   549-874   Clostridium neurotoxins, "coiled-coil" domain  

Clostridium botulinum A3 str. Loch Maree has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|169834914|ref|YP_001715702.1|   2.62e-121   465-796   Clostridium neurotoxins, "coiled-coil" domain  
gi|169835008|ref|YP_001715703.1|   3.53e-111   545-870   Clostridium neurotoxins, "coiled-coil" domain  
 
Weak hits:
gi|170760800|ref|YP_001787260.1|   0.0497   794-869   Clostridium neurotoxins, "coiled-coil" domain  

Clostridium botulinum A str. Hall has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|153935962|ref|YP_001386737.1|   1.44e-119   498-830   Clostridium neurotoxins, "coiled-coil" domain  
gi|153936924|ref|YP_001386738.1|   1.18e-123   549-874   Clostridium neurotoxins, "coiled-coil" domain  

Clostridium botulinum A str. ATCC 19397 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|153931567|ref|YP_001383190.1|   1.18e-123   549-874   Clostridium neurotoxins, "coiled-coil" domain  
gi|153932404|ref|YP_001383189.1|   1.44e-119   498-830   Clostridium neurotoxins, "coiled-coil" domain  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a Clostridium neurotoxins, "coiled-coil" domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   905 905
No Yes Clostridium tetani E88   1 1
No Yes Clostridium botulinum A str. ATCC 3502   2 2
No Yes Clostridium tetani genome 12124569   1 1
No Yes Clostridium botulinum H04402 065   2 2
No Yes Clostridium botulinum BKT015925   2 2
No Yes Clostridium botulinum F str. 230613   2 2
No Yes Clostridium botulinum F str. Langeland   2 2
No Yes Clostridium botulinum E3 str. Alaska E43   2 2
No Yes Clostridium botulinum B1 str. Okra   2 2
No Yes Clostridium botulinum Ba4 str. 657   4 4
No Yes Clostridium botulinum A2 str. Kyoto   2 2
No Yes Clostridium botulinum A3 str. Loch Maree   2 2
No Yes Clostridium botulinum A str. Hall   2 2
No Yes Clostridium botulinum A str. ATCC 19397   2 2
No Yes Mouse Gut Community lean1 (meta-genome)   1 1
No Yes NCBI 2017_08 genome   385 385
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   23 23
No Yes Uniprot 2018_03 genome   312 312
No Yes Global Ocean Sampling Expedition (GOS)   5 5
No Yes NCBI plasmid sequences (Plasmids)   16 16
No Yes NCBI viral sequences (Viral)   2 2
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   48 48
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   65 65
No Yes UniProt viral sequences (Viral)   7 7

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.