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Type I dockerin domain superfamily domain assignments
in
all archaeal genomes

Assignment details

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25 selected genomes have 92 significant domains in 92 proteins.

Showing genomes 1 to 25 of 45
  1 2   Next Last

Methanocella conradii HZ254 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|383320075|ref|YP_005380916.1|   0.0000153   1325-1380   Type I dockerin domain  

Methanosaeta harundinacea 6Ac has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386001729|ref|YP_005920028.1|   0.0000576   30-84   Type I dockerin domain  
 
Weak hits:
gi|386001728|ref|YP_005920027.1|   0.000128   25-81   Type I dockerin domain  

Methanosaeta thermophila PT has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|116754280|ref|YP_843398.1|   0.00000432   28-88   Type I dockerin domain  
gi|116754886|ref|YP_844004.1|   0.0000183   30-85   Type I dockerin domain  
gi|116754887|ref|YP_844005.1|   0.00000523   24-80   Type I dockerin domain  
 
Weak hits:
gi|116754883|ref|YP_844001.1|   0.0186   2-47   Type I dockerin domain  

Methanosaeta concilii GP6 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|330506940|ref|YP_004383368.1|   0.0000576   34-91   Type I dockerin domain  
gi|330507646|ref|YP_004384074.1|   0.0000209   31-86   Type I dockerin domain  
gi|330508043|ref|YP_004384471.1|   0.000000618   41-98   Type I dockerin domain  
gi|330508044|ref|YP_004384472.1|   0.00000034   28-86   Type I dockerin domain  
gi|330508045|ref|YP_004384473.1|   0.00000379   44-103   Type I dockerin domain  
gi|330508066|ref|YP_004384494.1|   0.000017   30-88   Type I dockerin domain  
gi|330508071|ref|YP_004384499.1|   0.0000405   35-91   Type I dockerin domain  
gi|330509003|ref|YP_004385431.1|   0.000000955   34-91   Type I dockerin domain  
 
Weak hits:
gi|330508057|ref|YP_004384485.1|   0.000222   28-84   Type I dockerin domain  

Methanococcoides burtonii DSM 6242 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|91772751|ref|YP_565443.1|   0.0000000147   1070-1123   Type I dockerin domain  

Methanosarcina acetivorans C2A has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|20090369|ref|NP_616444.1|   0.0000628   2061-2115   Type I dockerin domain  
gi|20090700|ref|NP_616775.1|   0.0000109   40-94   Type I dockerin domain  
gi|20093096|ref|NP_619171.1|   0.00000116   22-75   Type I dockerin domain  
 
Weak hits:
gi|20089734|ref|NP_615809.1|   0.0149   2224-2273   Type I dockerin domain  
gi|20089735|ref|NP_615810.1|   0.00255   2512-2563   Type I dockerin domain  
gi|20090605|ref|NP_616680.1|   0.000412   1095-1146   Type I dockerin domain  
gi|20090607|ref|NP_616682.1|   0.000432   1134-1185   Type I dockerin domain  
gi|20090612|ref|NP_616687.1|   0.000667   1021-1072   Type I dockerin domain  
gi|20090613|ref|NP_616688.1|   0.00275   3934-3985   Type I dockerin domain  
gi|20090617|ref|NP_616692.1|   0.00104   1693-1744   Type I dockerin domain  
gi|20091616|ref|NP_617691.1|   0.00122   1803-1854   Type I dockerin domain  
gi|20092498|ref|NP_618573.1|   0.00163   1962-2013   Type I dockerin domain  
gi|20092499|ref|NP_618574.1|   0.00235   2469-2520   Type I dockerin domain  
gi|20092500|ref|NP_618575.1|   0.00145   1827-1878   Type I dockerin domain  
gi|20093074|ref|NP_619149.1|   0.000981   1689-1740   Type I dockerin domain  
gi|20093076|ref|NP_619151.1|   0.00106   2111-2162   Type I dockerin domain  
gi|20093080|ref|NP_619155.1|   0.00167   1844-1895   Type I dockerin domain  
gi|20093081|ref|NP_619156.1|   0.00102   1941-1992   Type I dockerin domain  
gi|20093086|ref|NP_619161.1|   0.00165   1763-1814   Type I dockerin domain  
gi|20093094|ref|NP_619169.1|   0.00255   1894-1945   Type I dockerin domain  
gi|20093098|ref|NP_619173.1|   0.00155   1208-1261   Type I dockerin domain  
gi|20093101|ref|NP_619176.1|   0.00314   1975-2026   Type I dockerin domain  
gi|20093104|ref|NP_619179.1|   0.000412   1578-1630   Type I dockerin domain  
gi|20093372|ref|NP_619447.1|   0.00334   2897-2948   Type I dockerin domain  
gi|20093373|ref|NP_619448.1|   0.000628   1303-1354   Type I dockerin domain  

Methanosarcina mazei Go1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|21228200|ref|NP_634122.1|   0.00000000373   280-332   Type I dockerin domain  

Methanosphaerula palustris E1-9c has 36 significant domains in 36 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|219851069|ref|YP_002465501.1|   0.0000341   414-467   Type I dockerin domain  
gi|219851070|ref|YP_002465502.1|   0.0000000177   698-748   Type I dockerin domain  
gi|219851088|ref|YP_002465520.1|   0.0000000471   778-830   Type I dockerin domain  
gi|219851095|ref|YP_002465527.1|   0.00000155   349-403   Type I dockerin domain  
gi|219851157|ref|YP_002465589.1|   0.0000000706   573-626   Type I dockerin domain  
gi|219851391|ref|YP_002465823.1|   0.000000186   247-296   Type I dockerin domain  
gi|219851392|ref|YP_002465824.1|   0.000000275   243-292   Type I dockerin domain  
gi|219851493|ref|YP_002465925.1|   0.0000000235   337-390   Type I dockerin domain  
gi|219851510|ref|YP_002465942.1|   0.00000139   434-488   Type I dockerin domain  
gi|219851541|ref|YP_002465973.1|   0.000000145   381-432   Type I dockerin domain  
gi|219851646|ref|YP_002466078.1|   0.0000153   643-696   Type I dockerin domain  
gi|219851647|ref|YP_002466079.1|   0.0000432   644-697   Type I dockerin domain  
gi|219851898|ref|YP_002466330.1|   0.000000235   336-385   Type I dockerin domain  
gi|219851966|ref|YP_002466398.1|   0.00000667   752-806   Type I dockerin domain  
gi|219851969|ref|YP_002466401.1|   0.000000186   625-674   Type I dockerin domain  
gi|219852010|ref|YP_002466442.1|   0.00000167   658-708   Type I dockerin domain  
gi|219852016|ref|YP_002466448.1|   0.00000785   338-391   Type I dockerin domain  
gi|219852059|ref|YP_002466491.1|   0.00000432   428-477   Type I dockerin domain  
gi|219852082|ref|YP_002466514.1|   0.000000746   681-733   Type I dockerin domain  
gi|219852087|ref|YP_002466519.1|   0.00000116   617-666   Type I dockerin domain  
gi|219852362|ref|YP_002466794.1|   0.0000001   904-958   Type I dockerin domain  
gi|219852392|ref|YP_002466824.1|   0.000001   310-358   Type I dockerin domain  
gi|219852393|ref|YP_002466825.1|   0.0000000942   794-848   Type I dockerin domain  
gi|219852409|ref|YP_002466841.1|   0.000000706   733-787   Type I dockerin domain  
gi|219852430|ref|YP_002466862.1|   0.00000706   541-594   Type I dockerin domain  
gi|219852663|ref|YP_002467095.1|   0.0000000706   468-522   Type I dockerin domain  
gi|219852796|ref|YP_002467228.1|   0.00000000157   399-454   Type I dockerin domain  
gi|219852857|ref|YP_002467289.1|   0.000053   338-386   Type I dockerin domain  
gi|219852869|ref|YP_002467301.1|   0.00000275   59-108   Type I dockerin domain  
gi|219852940|ref|YP_002467372.1|   0.0000000108   815-869   Type I dockerin domain  
gi|219852941|ref|YP_002467373.1|   0.000000667   528-578   Type I dockerin domain  
gi|219853178|ref|YP_002467610.1|   0.000000192   471-520   Type I dockerin domain  
gi|219853189|ref|YP_002467621.1|   0.0000000118   876-930   Type I dockerin domain  
gi|219853190|ref|YP_002467622.1|   0.000000145   292-342   Type I dockerin domain  
gi|219853226|ref|YP_002467658.1|   0.0000000549   527-581   Type I dockerin domain  
gi|219853304|ref|YP_002467736.1|   0.000000216   507-560   Type I dockerin domain  
 
Weak hits:
gi|219852286|ref|YP_002466718.1|   0.000124   1005-1055   Type I dockerin domain  
gi|219853027|ref|YP_002467459.1|   0.000353   304-358   Type I dockerin domain  

Methanospirillum hungatei JF-1 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|88601500|ref|YP_501678.1|   0.000000249   33-92   Type I dockerin domain  
gi|88601945|ref|YP_502123.1|   0.000000275   496-546   Type I dockerin domain  
gi|88602185|ref|YP_502363.1|   0.00000183   415-466   Type I dockerin domain  
gi|88604274|ref|YP_504452.1|   0.0000034   473-524   Type I dockerin domain  
 
Weak hits:
gi|88602258|ref|YP_502436.1|   0.000647   667-719   Type I dockerin domain  
gi|88602731|ref|YP_502909.1|   0.00392   541-593   Type I dockerin domain  
gi|88603738|ref|YP_503916.1|   0.000314   1476-1528   Type I dockerin domain  

Methanoplanus petrolearius DSM 11571 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|307353096|ref|YP_003894147.1|   0.0000255   262-315   Type I dockerin domain  

Methanoculleus bourgensis MS2 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|397780950|ref|YP_006545423.1|   0.00000000209   800-856   Type I dockerin domain  
gi|397781302|ref|YP_006545775.1|   0.00000000981   710-777   Type I dockerin domain  
gi|397781304|ref|YP_006545777.1|   0.0000000131   192-252   Type I dockerin domain  
gi|397781305|ref|YP_006545778.1|   0.00000128   714-773   Type I dockerin domain  
gi|397781306|ref|YP_006545779.1|   0.000000054   124-184   Type I dockerin domain  
gi|397781307|ref|YP_006545780.1|   0.000000706   1936-1994   Type I dockerin domain  
gi|397781308|ref|YP_006545781.1|   0.000000209   1269-1329   Type I dockerin domain  
gi|397781310|ref|YP_006545783.1|   0.00000000017   1891-1946   Type I dockerin domain  

Methanoculleus marisnigri JR1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|126178623|ref|YP_001046588.1|   0.00000000017   796-855   Type I dockerin domain  

Archaeoglobus fulgidus DSM 4304 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|11499952|ref|NP_071198.1|   0.00000000147   435-489   Type I dockerin domain  

Pyrococcus abyssi GE5 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|14521248|ref|NP_126723.1|   0.0000000301   438-492   Type I dockerin domain  

Pyrococcus furiosus COM1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|397651510|ref|YP_006492091.1|   0.0000000654   439-491   Type I dockerin domain  

Thermoplasmatales archaeon BRNA1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|474934466|ref|YP_007688048.1|   0.00000288   3-65   Type I dockerin domain  
gi|474934741|ref|YP_007688323.1|   0.00000000235   38-94   Type I dockerin domain  
 
Weak hits:
gi|474934702|ref|YP_007688284.1|   0.000275   46-105   Type I dockerin domain  
gi|474934742|ref|YP_007688324.1|   0.00209   43-94   Type I dockerin domain  

Halopiger xanaduensis SH-6 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|336253309|ref|YP_004596416.1|   0.000000432   830-881   Type I dockerin domain  

Haloterrigena turkmenica DSM 5511 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|284163917|ref|YP_003402196.1|   0.00000049   831-882   Type I dockerin domain  
gi|284163918|ref|YP_003402197.1|   0.000000115   830-881   Type I dockerin domain  

Natrialba magadii ATCC 43099 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|289582127|ref|YP_003480593.1|   0.00000000824   514-575   Type I dockerin domain  
gi|289583606|ref|YP_003482016.1|   0.0000000314   496-557   Type I dockerin domain  

Halogeometricum borinquense DSM 11551 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|313116868|ref|YP_004037992.1|   0.0000275   985-1037   Type I dockerin domain  
gi|313117346|ref|YP_004044329.1|   0.0000000265   350-402   Type I dockerin domain  

Haloferax mediterranei ATCC 33500 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|389847562|ref|YP_006349801.1|   0.00000157   1025-1074   Type I dockerin domain  
gi|389847569|ref|YP_006349808.1|   0.00000000128   546-600   Type I dockerin domain  

Halomicrobium mukohataei DSM 12286 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|257386761|ref|YP_003176534.1|   0.000000608   834-885   Type I dockerin domain  

Halorhabdus utahensis DSM 12940 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|257052071|ref|YP_003129904.1|   0.0000000131   920-974   Type I dockerin domain  
gi|257052933|ref|YP_003130766.1|   0.00000157   356-406   Type I dockerin domain  
gi|257053489|ref|YP_003131322.1|   0.0000000883   644-698   Type I dockerin domain  
 
Weak hits:
gi|257051389|ref|YP_003129222.1|   0.000109   431-480   Type I dockerin domain  

Haloarcula hispanica ATCC 33960 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|344209742|ref|YP_004785919.1|   0.00000000706   107-158   Type I dockerin domain  
gi|344211693|ref|YP_004796013.1|   0.0000049   834-885   Type I dockerin domain  

Haloarcula marismortui ATCC 43049 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|55377185|ref|YP_135035.1|   0.0000141   687-738   Type I dockerin domain  
gi|55377611|ref|YP_135461.1|   0.00000961   838-889   Type I dockerin domain  
gi|55379051|ref|YP_136901.1|   0.00000726   556-605   Type I dockerin domain  
gi|55380211|ref|YP_138060.1|   0.0000000239   124-175   Type I dockerin domain  

  1 2   Next Last
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Select to display   Genome       Domains   Proteins
No Yes ALL   31323 31323
No Yes Amphimedon queenslandica   1 1
No Yes Trichoplax adhaerens   1 1
No Yes Proterospongia sp. ATCC 50818   5 5
No Yes Monosiga brevicollis   3 2
No Yes Acholeplasma laidlawii PG-8A   1 1
No Yes Gloeobacter violaceus PCC 7421   6 6
No Yes Nostoc sp. PCC 7524   1 1
No Yes Anabaena sp. 90   1 1
No Yes Eggerthella lenta DSM 2243   1 1
No Yes Microbacterium testaceum StLB037   1 1
No Yes Truepera radiovictrix DSM 17093   1 1
No Yes Deinococcus gobiensis I-0   1 1
No Yes Deinococcus deserti VCD115   1 1
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Deinococcus proteolyticus MRP   1 1
No Yes Deinococcus radiodurans R1   1 1
No Yes Erysipelothrix rhusiopathiae str. Fujisawa   1 1
No Yes Clostridium clariflavum DSM 19732   81 79
No Yes Clostridium cellulolyticum H10   62 62
No Yes Clostridium thermocellum ATCC 27405   73 71
No Yes Ruminococcus bromii   27 26
No Yes Ruminococcus albus 7   60 60
No Yes Desulfotomaculum acetoxidans DSM 771   10 10
No Yes Acetobacterium woodii DSM 1030   1 1
No Yes Eubacterium eligens ATCC 27750   1 1
No Yes Eubacterium limosum KIST612   5 5
No Yes Clostridium difficile 630   1 1
No Yes Clostridium saccharolyticum WM1   1 1
No Yes Clostridium lentocellum DSM 5427   1 1
No Yes [Ruminococcus] obeum   1 1
No Yes Eubacterium rectale M104/1   1 1
No Yes Eubacterium rectale ATCC 33656   1 1
No Yes Roseburia hominis A2-183   1 1
No Yes Butyrivibrio fibrisolvens   1 1
No Yes Candidatus Arthromitus sp. SFB-mouse-Japan   1 1
No Yes Clostridium sp. BNL1100   72 72
No Yes Clostridium perfringens ATCC 13124   4 4
No Yes Clostridium cellulovorans 743B   45 44
No Yes Clostridium acetobutylicum ATCC 824   10 10
No Yes Lactobacillus casei ATCC 334   1 1
No Yes Lactobacillus rhamnosus Lc 705   1 1
No Yes Paenibacillus sp. JDR-2   8 8
No Yes Paenibacillus mucilaginosus 3016   9 9
No Yes Bacillus selenitireducens MLS10   1 1
No Yes Oceanobacillus iheyensis HTE831   2 2
No Yes Bacillus thuringiensis str. Al Hakam   2 2
No Yes Bacillus cereus 03BB102   2 2
No Yes Candidatus Cloacamonas acidaminovorans   1 1
No Yes Melioribacter roseus P3M   1 1
No Yes Ignavibacterium album JCM 16511   7 7
No Yes Haliscomenobacter hydrossis DSM 1100   18 18
No Yes Salinibacter ruber M8   1 1
No Yes Parabacteroides distasonis ATCC 8503   1 1
No Yes Prevotella melaninogenica ATCC 25845   1 1
No Yes Bacteroides helcogenes P 36-108   1 1
No Yes Bacteroides thetaiotaomicron VPI-5482   1 1
No Yes Bacteroides fragilis YCH46   1 1
No Yes Robiginitalea biformata HTCC2501   1 1
No Yes Ornithobacterium rhinotracheale DSM 15997   1 1
No Yes Capnocytophaga canimorsus Cc5   1 1
No Yes Flavobacterium johnsoniae UW101   1 1
No Yes Phycisphaera mikurensis NBRC 102666   1 1
No Yes Isosphaera pallida ATCC 43644   7 7
No Yes Rhodopirellula baltica SH 1   18 18
No Yes Pirellula staleyi DSM 6068   1 1
No Yes Opitutus terrae PB90-1   1 1
No Yes Akkermansia muciniphila ATCC BAA-835   1 1
No Yes Elusimicrobium minutum Pei191   1 1
No Yes Caldisericum exile AZM16c01   2 2
No Yes Granulicella mallensis MP5ACTX8   1 1
No Yes Terriglobus saanensis SP1PR4   2 2
No Yes Desulfobacca acetoxidans DSM 11109   1 1
No Yes Syntrophobacter fumaroxidans MPOB   1 1
No Yes Desulfatibacillum alkenivorans AK-01   18 18
No Yes Desulfococcus oleovorans Hxd3   1 1
No Yes Geobacter daltonii FRC-32   4 4
No Yes Geobacter uraniireducens Rf4   7 7
No Yes Geobacter sulfurreducens KN400   4 4
No Yes Geobacter metallireducens GS-15   1 1
No Yes Corallococcus coralloides DSM 2259   2 2
No Yes Myxococcus fulvus HW-1   2 2
No Yes Cellvibrio japonicus Ueda107   1 1
No Yes Shewanella piezotolerans WP3   1 1
No Yes Pseudoalteromonas atlantica T6c   3 3
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Marinobacter hydrocarbonoclasticus ATCC 49840   1 1
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Alteromonas sp. SN2   2 2
No Yes Alteromonas macleodii str. 'Deep ecotype'   1 1
No Yes Hahella chejuensis KCTC 2396   2 2
No Yes Methylomicrobium alcaliphilum   1 1
No Yes Methylomonas methanica MC09   2 2
No Yes Methanocella conradii HZ254   1 1
No Yes Methanosaeta harundinacea 6Ac   1 1
No Yes Methanosaeta thermophila PT   3 3
No Yes Methanosaeta concilii GP6   8 8
No Yes Methanococcoides burtonii DSM 6242   1 1
No Yes Methanosarcina acetivorans C2A   3 3
No Yes Methanosarcina mazei Go1   1 1
No Yes Methanosphaerula palustris E1-9c   36 36
No Yes Methanospirillum hungatei JF-1   4 4
No Yes Methanoplanus petrolearius DSM 11571   1 1
No Yes Methanoculleus bourgensis MS2   8 8
No Yes Methanoculleus marisnigri JR1   1 1
No Yes Archaeoglobus fulgidus DSM 4304   1 1
No Yes Pyrococcus abyssi GE5   1 1
No Yes Pyrococcus furiosus COM1   1 1
No Yes Thermoplasmatales archaeon BRNA1   2 2
No Yes Halopiger xanaduensis SH-6   1 1
No Yes Haloterrigena turkmenica DSM 5511   2 2
No Yes Natrialba magadii ATCC 43099   2 2
No Yes Halogeometricum borinquense DSM 11551   2 2
No Yes Haloferax mediterranei ATCC 33500   2 2
No Yes Halomicrobium mukohataei DSM 12286   1 1
No Yes Halorhabdus utahensis DSM 12940   3 3
No Yes Haloarcula hispanica ATCC 33960   2 2
No Yes Haloarcula marismortui ATCC 43049   4 4
No Yes Halobacterium salinarum R1   1 1
No Yes Halobacterium sp. NRC-1   1 1
No Yes Methanotorris igneus Kol 5   2 2
No Yes methanocaldococcus infernus ME   3 3
No Yes Methanothermococcus okinawensis IH1   4 4
No Yes Methanococcus aeolicus Nankai-3   3 3
No Yes Methanococcus voltae A3   2 2
No Yes Methanococcus vannielii SB   1 1
No Yes Dactylococcopsis salina PCC 8305   2 2
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Cyanothece sp. PCC 7822   3 3
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   7 7
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Deinococcus peraridilitoris DSM 19664   1 1
No Yes Erysipelothrix rhusiopathiae SY1027   1 1
No Yes Clostridium thermocellum DSM 1313   78 76
No Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532   1 1
No Yes Ruminococcus champanellensis 18P13   63 62
No Yes Clostridium difficile BI1   1 1
No Yes Clostridium difficile R20291   1 1
No Yes Clostridium difficile CD196   1 1
No Yes Clostridium saccharolyticum Clostridium cf. saccharolyticum K10   1 1
No Yes Candidatus Arthromitus sp. SFB-rat-Yit   1 1
No Yes Candidatus Arthromitus sp. SFB-mouse-Yit   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   8 8
No Yes Clostridium perfringens str. 13   3 3
No Yes Clostridium acetobutylicum DSM 1731   10 10
No Yes Clostridium acetobutylicum EA 2018   10 10
No Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485   1 1
No Yes Enterococcus faecalis OG1RF   1 1
No Yes Enterococcus faecalis V583   1 1
No Yes Lactobacillus rhamnosus LOCK908   1 1
No Yes Lactobacillus rhamnosus LOCK900   1 1
No Yes Lactobacillus rhamnosus ATCC 8530   1 1
No Yes Lactobacillus rhamnosus GG   1 1
No Yes Lactobacillus rhamnosus GG   1 1
No Yes Thermobacillus composti KWC4   1 1
No Yes Paenibacillus mucilaginosus KNP414   9 9
No Yes Paenibacillus mucilaginosus K02   8 8
No Yes Bacillus toyonensis BCT-7112   2 2
No Yes Bacillus thuringiensis MC28   2 2
No Yes Bacillus thuringiensis serovar chinensis CT-43   1 1
No Yes Bacillus thuringiensis YBT-1518   1 1
No Yes Bacillus thuringiensis Bt407   1 1
No Yes Bacillus thuringiensis serovar kurstaki str. HD73   1 1
No Yes Bacillus thuringiensis BMB171   1 1
No Yes Bacillus thuringiensis serovar finitimus YBT-020   1 1
No Yes Bacillus thuringiensis serovar thuringiensis str. IS5056   1 1
No Yes Bacillus cereus FRI-35   2 2
No Yes Bacillus cereus biovar anthracis str. CI   2 2
No Yes Bacillus cereus AH187   1 1
No Yes Bacillus cereus B4264   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   2 2
No Yes Bacillus cereus NC7401   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus cereus ATCC 14579   1 1
No Yes Bacillus cereus ATCC 10987   1 1
No Yes Salinibacter ruber DSM 13855   1 1
No Yes Rhodothermus marinus SG0.5JP17-172   2 2
No Yes Bacteroides fragilis 638R   1 1
No Yes Bacteroides fragilis NCTC 9343   1 1
No Yes Singulisphaera acidiphila DSM 18658   3 3
No Yes Desulfocapsa sulfexigens DSM 10523   1 1
No Yes Geobacter sulfurreducens PCA   4 4
No Yes Sorangium cellulosum So0157-2   1 1
No Yes Myxococcus stipitatus DSM 14675   1 1
No Yes Sulfuricella denitrificans skB26   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   1 1
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   1 1
No Yes Alteromonas macleodii AltDE1   1 1
No Yes Alteromonas macleodii str. 'English Channel 673'   1 1
No Yes Alteromonas macleodii str. 'Balearic Sea AD45'   1 1
No Yes Alteromonas macleodii str. 'Black Sea 11'   1 1
No Yes Alteromonas macleodii ATCC 27126   1 1
No Yes Methanolobus psychrophilus R15   1 1
No Yes Methanosarcina mazei Tuc01   1 1
No Yes Archaeoglobus sulfaticallidus PM70-1   4 4
No Yes Thermococcus litoralis DSM 5473   1 1
No Yes Pyrococcus sp. NA2   1 1
No Yes Pyrococcus furiosus DSM 3638   1 1
No Yes Candidatus Methanomethylophilus alvus Mx1201   3 3
No Yes Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1   9 9
No Yes Natronobacterium gregoryi SP2   1 1
No Yes Halorhabdus tiamatea SARL4B   7 7
No Yes Haloarcula hispanica N601   2 2
No Yes Methanococcus maripaludis X1   2 2
No Yes Acholeplasma laidlawii PG-8A (duplicate)   1 1
No Yes 1_050719N (meta-genome)   2 2
No Yes 1_Upper_euphotic (meta-genome)   2 2
No Yes 2_Base_of_chrolophyll_max (meta-genome)   2 2
No Yes 3_050719R (meta-genome)   135 134
No Yes 3_Below_base_of_euphotic (meta-genome)   2 2
No Yes 4_050719Q (meta-genome)   97 97
No Yes 4_Deep_abyss (meta-genome)   8 8
No Yes 5_050719P (meta-genome)   142 142
No Yes 5_Below_upper_mesopelagic (meta-genome)   3 3
No Yes 6_Upper_euphotic (meta-genome)   3 3
No Yes 7_Oxygen_minimum_layer (meta-genome)   12 12
No Yes Anaerobic methane oxidation (AOM) community from Eel River Basin sediment, California (meta-genome)   3 3
No Yes Bath Hot Springs, planktonic community (meta-genome)   1 1
No Yes Combined (meta-genome)   1 1
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   3 3
No Yes Dump bottom (Dump bottom) (meta-genome)   4 4
No Yes Dump top (Dump top) (meta-genome)   6 6
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   15 15
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   2 2
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   8 8
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   3 3
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   5 5
No Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome)   6 6
No Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome)   7 7
No Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome)   11 11
No Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)   2 2
No Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome)   15 15
No Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)   8 8
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   7 7
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   11 11
No Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   58 58
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   33 33
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   9 9
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)   12 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   12 12
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)   20 20
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   13 13
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   1 1
No Yes Human Gut Community Subject 7 (meta-genome)   13 13
No Yes Human Gut Community Subject 8 (meta-genome)   18 18
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   55 55
No Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)   2 2
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   7 7
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   75 75
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   29 29
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   16 16
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   25 25
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   6 6
No Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)   8 8
No Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)   10 10
No Yes NCBI 2017_08 genome   11161 11071
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   29 29
No Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   13 13
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   7 7
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Sludge/US, Jazz Assembly (meta-genome)   1 1
No Yes Sludge/US, Phrap Assembly (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   36 36
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   70 70
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   16 16
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   7 7
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   22 22
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   24 24
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   6 6
No Yes STRING v9.0.5 (STRING)   349 346
No Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)   2 2
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   30 30
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   5 5
No Yes Uniprot 2018_03 genome   15933 15737
No Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)   35 35
No Yes Global Ocean Sampling Expedition (GOS)   766 765
No Yes NCBI plasmid sequences (Plasmids)   22 22
No Yes NCBI viral sequences (Viral)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   47 47
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   69 69
No Yes TargetDB (Targets)   46 44

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