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Penta-EF-hand proteins family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   11757 11757
No Yes Homo sapiens 76_38 Human 53 53
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 8 8
No Yes Gorilla gorilla 76_3.1 Western gorilla 13 13
No Yes Pongo abelii 76_2 Sumatran orangutan 9 9
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 8 8
No Yes Papio anubis 76 Olive baboon 9 9
No Yes Macaca mulatta 76_1 Rhesus monkey 18 18
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 22 22
No Yes Otolemur garnettii 76_3 Small-eared galago 11 11
No Yes Microcebus murinus 76_1 Gray mouse lemur 5 5
No Yes Rattus norvegicus 76_5.0 Norway rat 13 13
No Yes Mus musculus 76_38 House mouse 20 20
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 7 7
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 10 10
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 10 10
No Yes Cavia porcellus 76_3 Domestic guinea pig 10 10
No Yes Oryctolagus cuniculus 76_2 Rabbit 10 10
No Yes Ochotona princeps 76 American pika 8 8
No Yes Tupaia belangeri 76 Northern tree shrew 4 4
No Yes Sus scrofa 76_10.2 Pig 12 12
No Yes Bos taurus 76_3.1 Cattle 10 10
No Yes Ovis aries 76_3.1 Sheep 10 10
No Yes Vicugna pacos 76_1 Alpaca 5 5
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 7 7
No Yes Mustela putorius furo 76_1.0 Domestic ferret 9 9
No Yes Ailuropoda melanoleuca 76_1 Giant panda 10 10
No Yes Canis familiaris 76_3.1 Dog 14 14
No Yes Felis catus 76_6.2 Domestic cat 8 8
No Yes Equus caballus 76_2 Horse 14 14
No Yes Myotis lucifugus 76_2.0 Little brown bat 8 8
No Yes Pteropus vampyrus 76_1 Large flying fox 6 6
No Yes Sorex araneus 76_1 European shrew 4 4
No Yes Erinaceus europaeus 76 Western European hedgehog 4 4
No Yes Procavia capensis 76_1 Cape rock hyrax 5 5
No Yes Loxodonta africana 76_3 African savanna elephant 16 16
No Yes Echinops telfairi 76 Small Madagascar hedgehog 6 6
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 9 9
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 5 5
No Yes Macropus eugenii 76_1.0 Tammar wallaby 4 4
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 11 11
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 9 9
No Yes Ornithorhynchus anatinus 76_5 Platypus 7 7
No Yes Saccoglossus kowalevskii v3.0   8 8
No Yes Petromyzon marinus 76_7.0 Sea lamprey 7 7
No Yes Meleagris gallopavo 76_2 Turkey 9 9
No Yes Gallus gallus 76_4 Chicken 6 6
No Yes Anas platyrhynchos 76_1.0 Mallard 8 8
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 8 8
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 8 8
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 9 9
No Yes Anolis carolinensis 76_2.0 Green anole 10 10
No Yes Xenopus laevis African clawed frog 38 38
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 15 15
No Yes Latimeria chalumnae 76_1 Coelacanth 8 8
No Yes Lepisosteus oculatus 76 Spotted gar 14 14
No Yes Gadus morhua 76_1 Atlantic cod 12 12
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 18 18
No Yes Takifugu rubripes 76_4 Torafugu 54 54
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 26 26
No Yes Oryzias latipes 76_1 Japanese medaka 15 15
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 12 12
No Yes Poecilia formosa 76 Amazon molly 14 14
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 17 17
No Yes Astyanax mexicanus 76 Mexican tetra 16 16
No Yes Danio rerio 76_9 Zebrafish 29 29
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 76 Vase tunicate 2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 5 5
No Yes Adineta vaga   2 2
No Yes Octopus bimaculoides 280   2 2
No Yes Crassostrea gigas 22 Pacific oyster 3 3
No Yes Lottia gigantea Owl limpet 2 2
No Yes Helobdella robusta   3 3
No Yes Capitella sp. I   4 4
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Nasonia vitripennis Jewel wasp 2 2
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 5 5
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 2
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Lucilia cuprina Australian sheep blowfly 1 1
No Yes Drosophila grimshawi 1.3   2 2
No Yes Drosophila willistoni 1.3   1 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila persimilis 1.3   1 1
No Yes Drosophila suzukii   1 1
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   1 1
No Yes Drosophila melanogaster 76_5 Fruit fly 2 2
No Yes Drosophila erecta 1.3   1 1
No Yes Drosophila ananassae 1.3   1 1
No Yes Drosophila mojavensis 1.3   2 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 3 3
No Yes Rhodnius prolixus 22   2 2
No Yes Daphnia pulex Common water flea 2 2
No Yes Strigamia maritima 22   3 3
No Yes Sarcoptes scabiei   1 1
No Yes Tetranychus urticae Two-spotted spider mite 2 2
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Pristionchus pacificus   1 1
No Yes Meloidogyne incognita Southern root-knot nematode 3 3
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis japonica   1 1
No Yes Caenorhabditis remanei   1 1
No Yes Caenorhabditis elegans 76_235 Roundworm 2 2
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   1 1
No Yes Hymenolepis microstoma   1 1
No Yes Echinococcus multilocularis   1 1
No Yes Echinococcus granulosus   1 1
No Yes Taenia solium Pork tapeworm 1 1
No Yes Schistosoma mansoni   3 3
No Yes Acropora digitifera v1.0   2 2
No Yes Nematostella vectensis 1.0 Starlet sea anemone 5 5
No Yes Hydra vulgaris   2 2
No Yes Amphimedon queenslandica   4 4
No Yes Trichoplax adhaerens   3 3
No Yes Proterospongia sp. ATCC 50818   1 1
No Yes Monosiga brevicollis   1 1
No Yes Sphaeroforma arctica JP610   2 2
No Yes Capsaspora owczarzaki ATCC 30864   2 2
No Yes Conidiobolus coronatus NRRL28638 v1.0   3 3
No Yes Mortierella verticillata NRRL 6337   3 3
No Yes Phycomyces blakesleeanus   2 2
No Yes Rhizopus oryzae RA 99-880   3 3
No Yes Mucor circinelloides   3 3
No Yes Rhizomucor miehei CAU432   2 2
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   1 1
No Yes Melampsora laricis-populina   1 1
No Yes Sphaerobolus stellatus v1.0   3 3
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Serpula lacrymans var. lacrymans S7.9   2 2
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   2 2
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   1 1
No Yes Pisolithus microcarpus 441 v1.0   1 1
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Scleroderma citrinum Foug A v1.0   2 2
No Yes Coprinopsis cinerea okayama7 130 v3   2 2
No Yes Pleurotus ostreatus Oyster mushroom 2 2
No Yes Amanita thiersii Skay4041 v1.0   2 2
No Yes Amanita muscaria Koide v1.0 Fly agaric 2 2
No Yes Galerina marginata v1.0   2 2
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Laccaria bicolor S238N-H82   2 2
No Yes Agaricus bisporus var. bisporus   2 2
No Yes Schizophyllum commune   2 2
No Yes Stereum hirsutum FP-91666 SS1 v1.0   2 2
No Yes Heterobasidion annosum   2 2
No Yes Gloeophyllum trabeumv1.0   2 2
No Yes Punctularia strigosozonata v1.0   2 2
No Yes Sebacina vermifera MAFF 305830 v1.0   2 2
No Yes Fomitiporia mediterranea v1.0   2 2
No Yes Tulasnella calospora AL13/4D v1.0   2 2
No Yes Postia placenta   4 4
No Yes Wolfiporia cocos MD-104 SS10 v1.0   2 2
No Yes Fomitopsis pinicolav1.0   2 2
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   2 2
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Dichomitus squalens   2 2
No Yes Trametes versicolor v1.0   2 2
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Magnaporthe grisea 70-15   1 1
No Yes Podospora anserina   1 1
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   1 1
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   2 2
No Yes Cryphonectria parasitica Chestnut blight fungus 1 1
No Yes Verticillium dahliae VdLs.17   1 1
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Fusarium graminearum   1 1
No Yes Nectria haematococca mpVI   1 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   1 1
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma citrinoviride v1.0   1 1
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   1 1
No Yes Blumeria graminis 22   1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Leptosphaeria maculans 22   1 1
No Yes Setosphaeria turcica v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   1 1
No Yes Cochliobolus victoriae FI3 v1.0   1 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   1 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 1 1
No Yes Cochliobolus lunatus m118 v2.0   1 1
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Stagonospora nodorum   1 1
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   1 1
No Yes Dothistroma septosporum   1 1
No Yes Septoria musiva v1.0   1 1
No Yes Mycosphaerella fijiensis CIRAD86   1 1
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Uncinocarpus reesii 1704   1 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus fumigatus Af293   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus nidulans FGSC A4   1 1
No Yes Aspergillus sydowii v1.0   1 1
No Yes Aspergillus versicolor v1.0   1 1
No Yes Aspergillus glaucus   1 1
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   1 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus flavus NRRL3357   1 1
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Penicillium marneffei ATCC 18224   1 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Spizellomyces punctatus DAOM BR117   1 1
No Yes Leishmania mexicana 2.4   2 2
No Yes Leishmania major strain Friedlin   2 2
No Yes Leishmania infantum JPCM5 2.4   2 2
No Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4   1 1
No Yes Trypanosoma cruzi strain CL Brener   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 31 31
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 2 2
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 2 2
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Histoplasma capsulatum H143   1 1
No Yes Histoplasma capsulatum H88   1 1
No Yes Histoplasma capsulatum G186AR   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 52 52
No Yes Homo sapiens (NCBI version) Human 22 22
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 11 11
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Homo sapiens 69_37 Human 12 12
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 8 8
No Yes Gorilla gorilla 69_3.1 Western gorilla 10 10
No Yes Pongo abelii 69_2 Sumatran orangutan 9 9
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 7 7
No Yes Macaca mulatta 69_1 Rhesus monkey 11 11
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 9 9
No Yes Otolemur garnettii 69_3 Small-eared galago 11 11
No Yes Microcebus murinus 69_1 Gray mouse lemur 5 5
No Yes Rattus norvegicus 69_3.4 Norway rat 10 10
No Yes Mus musculus 69_38 House mouse 11 11
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 7 7
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 10 10
No Yes Cavia porcellus 69_3 Domestic guinea pig 10 10
No Yes Oryctolagus cuniculus 69_2 Rabbit 11 11
No Yes Ochotona princeps 69 American pika 8 8
No Yes Tupaia belangeri 69 Northern tree shrew 4 4
No Yes Sus scrofa 69_10.2 Pig 10 10
No Yes Bos taurus 69_3.1 Cattle 9 9
No Yes Vicugna pacos 69_1 Alpaca 5 5
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 7 7
No Yes Mustela putorius furo 69_1.0 Domestic ferret 9 9
No Yes Ailuropoda melanoleuca 69_1 Giant panda 10 10
No Yes Canis familiaris 69_3.1 Dog 11 11
No Yes Felis catus 69 Domestic cat 5 5
No Yes Equus caballus 69_2 Horse 10 10
No Yes Myotis lucifugus 69_2.0 Little brown bat 8 8
No Yes Pteropus vampyrus 69_1 Large flying fox 6 6
No Yes Sorex araneus 69_1 European shrew 4 4
No Yes Erinaceus europaeus 69 Western European hedgehog 4 4
No Yes Procavia capensis 69_1 Cape rock hyrax 5 5
No Yes Loxodonta africana 69_3 African savanna elephant 12 12
No Yes Echinops telfairi 69 Small Madagascar hedgehog 6 6
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 5 5
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 5 5
No Yes Macropus eugenii 69_1.0 Tammar wallaby 4 4
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 8 8
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 9 9
No Yes Ornithorhynchus anatinus 69_5 Platypus 7 7
No Yes Petromyzon marinus 69_7.0 Sea lamprey 6 6
No Yes Meleagris gallopavo 69_2 Turkey 8 8
No Yes Gallus gallus 69_2 Chicken 7 7
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 8 8
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 9 9
No Yes Anolis carolinensis 69_2.0 Green anole 10 10
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 12 12
No Yes Latimeria chalumnae 69_1 Coelacanth 7 7
No Yes Gadus morhua 69_1 Atlantic cod 12 12
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 11 11
No Yes Takifugu rubripes 69_4 Torafugu 11 11
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 13 13
No Yes Oryzias latipes 69_1 Japanese medaka 13 13
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 12 12
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 12 12
No Yes Danio rerio 69_9 Zebrafish 17 17
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 69 Vase tunicate 2 2
No Yes Drosophila melanogaster 69_5 Fruit fly 1 1
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes NCBI 2017_08 genome   4985 4981
No Yes Protozoadb 2010_08 (Protozoadb)   7 7
No Yes STRING v9.0.5 (STRING)   314 314
No Yes Uniprot 2018_03 genome   3348 3348
No Yes PDB chains (SCOP 1.75) (PDB)   17 16
No Yes Protein Data Bank (all PDB sequenc)   104 102
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   380 380
No Yes TargetDB (Targets)   15 15

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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