Select to display Genome Domains Proteins No ALL 268125 268125 Yes Lepisosteus oculatus 76 Spotted gar 1 1 Yes Oreochromis niloticus 76_1.0 Nile tilapia 1 1 Yes Oikopleura dioica 2 2 Yes Adineta vaga 1 1 Yes Octopus bimaculoides 280 2 2 Yes Lottia gigantea Owl limpet 1 1 Yes Helobdella robusta 1 1 Yes Drosophila grimshawi 1.3 3 3 Yes Drosophila melanogaster 76_5 Fruit fly 1 1 Yes Drosophila ananassae 1.3 1 1 Yes Drosophila mojavensis 1.3 1 1 Yes Anopheles gambiae 49_3j African malaria mosquito 1 1 Yes Strigamia maritima 22 1 1 Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1 Yes Caenorhabditis japonica 1 1 Yes Caenorhabditis brenneri 1 1 Yes Caenorhabditis remanei 6 6 Yes Nematostella vectensis 1.0 Starlet sea anemone 2 1 Yes Hydra vulgaris 1 1 Yes Proterospongia sp. ATCC 50818 4 4 Yes Mucor circinelloides 1 1 Yes Sporisorium reilianum 22 1 1 Yes Schizophyllum commune 1 1 Yes Trichophyton equinum CBS 127.97 1 1 Yes Aspergillus zonatus v1.0 1 1 Yes Candida lusitaniae ATCC 42720 1 1 Yes Schizosaccharomyces pombe Fission yeast 1 1 Yes Allomyces macrogynus ATCC 38327 2 2 Yes Dictyostelium discoideum 1 1 Yes Bigelowiella natans CCMP2755 22 1 1 Yes Leishmania major strain Friedlin 1 1 Yes Phytophthora capsici 3 2 Yes Fragilariopsis cylindrus 1 1 Yes Symbiodinium minutum clade B1 v1.2 1 1 Yes Trichomonas vaginalis 1 1 Yes Guillardia theta CCMP2712 v1.0 1 1 Yes Conexibacter woesei DSM 14684 8 8 Yes Acidimicrobium ferrooxidans DSM 10331 3 3 Yes Acidothermus cellulolyticus 11B 3 3 Yes Modestobacter marinus 3 3 Yes Blastococcus saxobsidens DD2 3 3 Yes Geodermatophilus obscurus DSM 43160 3 3 Yes Kineococcus radiotolerans SRS30216 4 3 Yes Streptosporangium roseum DSM 43021 1 1 Yes Streptomyces sp. PAMC26508 1 1 Yes Actinosynnema mirum DSM 43827 3 3 Yes Nocardioides sp. JS614 3 3 Yes Actinoplanes sp. N902-109 3 3 Yes Actinoplanes sp. SE50/110 3 3 Yes Actinoplanes missouriensis 431 3 3 Yes Sanguibacter keddieii DSM 10542 3 3 Yes Leifsonia xyli subsp. xyli str. CTCB07 2 2 Yes Jonesia denitrificans DSM 20603 6 6 Yes Intrasporangium calvum DSM 43043 1 1 Yes Cellulomonas fimi ATCC 484 3 3 Yes [Cellvibrio] gilvus ATCC 13127 3 3 Yes Arthrobacter chlorophenolicus A6 3 3 Yes Mobiluncus curtisii ATCC 43063 5 5 Yes Thermomicrobium roseum DSM 5159 3 3 Yes Sphaerobacter thermophilus DSM 20745 3 3 Yes Selenomonas sputigena ATCC 35185 5 5 Yes Selenomonas ruminantium subsp. lactilytica TAM6421 13 12 Yes Natranaerobius thermophilus JW/NM-WN-LF 3 3 Yes Symbiobacterium thermophilum IAM 14863 3 3 Yes Clostridium clariflavum DSM 19732 5 5 Yes Eubacterium siraeum 3 3 Yes Clostridium cellulolyticum H10 6 6 Yes Clostridium thermocellum ATCC 27405 5 5 Yes Ethanoligenens harbinense YUAN-3 4 3 Yes Thermaerobacter marianensis DSM 12885 3 3 Yes Sulfobacillus acidophilus DSM 10332 3 3 Yes Oscillibacter valericigenes Sjm18-20 3 3 Yes butyrate-producing bacterium SS3/4 4 4 Yes Candidatus Desulforudis audaxviator MP104C 3 3 Yes Thermincola potens JR 3 3 Yes Pelotomaculum thermopropionicum SI 3 3 Yes Desulfosporosinus acidiphilus SJ4 3 3 Yes Desulfosporosinus orientis DSM 765 8 8 Yes Dehalobacter sp. DCA 4 4 Yes Dehalobacter sp. CF 4 4 Yes Syntrophobotulus glycolicus DSM 8271 7 7 Yes Desulfitobacterium hafniense Y51 3 3 Yes Desulfitobacterium dehalogenans ATCC 51507 3 3 Yes Desulfotomaculum reducens MI-1 6 4 Yes Desulfotomaculum acetoxidans DSM 771 4 3 Yes Desulfotomaculum kuznetsovii DSM 6115 4 4 Yes Desulfotomaculum carboxydivorans CO-1-SRB 3 3 Yes Desulfotomaculum ruminis DSM 2154 4 4 Yes Acetobacterium woodii DSM 1030 4 4 Yes Eubacterium eligens ATCC 27750 7 7 Yes Clostridium difficile 630 3 3 Yes Clostridium sticklandii DSM 519 4 4 Yes Clostridium saccharolyticum WM1 2 2 Yes Clostridium phytofermentans ISDg 5 5 Yes Clostridium lentocellum DSM 5427 6 6 Yes Eubacterium rectale M104/1 7 7 Yes Eubacterium rectale ATCC 33656 6 6 Yes Roseburia hominis A2-183 7 7 Yes Roseburia intestinalis 7 7 Yes Butyrivibrio proteoclasticus B316 8 8 Yes Butyrivibrio fibrisolvens 7 7 Yes Syntrophothermus lipocalidus DSM 12680 4 4 Yes Syntrophomonas wolfei subsp. wolfei str. Goettingen 6 3 Yes Heliobacterium modesticaldum Ice1 4 4 Yes Alkaliphilus oremlandii OhILAs 4 4 Yes Alkaliphilus metalliredigens QYMF 4 4 Yes Candidatus Arthromitus sp. SFB-mouse-Japan 7 7 Yes Clostridium sp. BNL1100 5 5 Yes Clostridium novyi NT 6 6 Yes Clostridium ljungdahlii DSM 13528 7 7 Yes Clostridium kluyveri DSM 555 4 4 Yes Clostridium beijerinckii NCIMB 8052 4 4 Yes Clostridium tetani E88 5 5 Yes Clostridium cellulovorans 743B 8 8 Yes Clostridium botulinum A str. ATCC 3502 8 8 Yes Clostridium acetobutylicum ATCC 824 6 6 Yes Mahella australiensis 50-1 BON 4 4 Yes Thermosediminibacter oceani DSM 16646 3 3 Yes Caldicellulosiruptor obsidiansis OB47 3 3 Yes Caldicellulosiruptor kronotskyensis 2002 3 3 Yes Caldicellulosiruptor hydrothermalis 108 3 3 Yes Caldicellulosiruptor owensensis OL 3 3 Yes Caldicellulosiruptor lactoaceticus 6A 3 3 Yes Caldicellulosiruptor kristjanssonii 177R1B 3 3 Yes Caldicellulosiruptor saccharolyticus DSM 8903 3 3 Yes Caldicellulosiruptor bescii DSM 6725 3 3 Yes Thermoanaerobacterium xylanolyticum LX-11 3 3 Yes Thermoanaerobacterium thermosaccharolyticum DSM 571 3 3 Yes Thermodesulfobium narugense DSM 14796 4 3 Yes Coprothermobacter proteolyticus DSM 5265 3 3 Yes Tepidanaerobacter acetatoxydans Re1 3 3 Yes Thermoanaerobacter tengcongensis MB4 3 3 Yes Carboxydothermus hydrogenoformans Z-2901 3 3 Yes Moorella thermoacetica ATCC 39073 3 3 Yes Ammonifex degensii KC4 3 3 Yes Thermoanaerobacter mathranii subsp. mathranii str. A3 3 3 Yes Thermoanaerobacter pseudethanolicus ATCC 33223 3 3 Yes Thermoanaerobacter sp. X514 3 3 Yes Thermoanaerobacter italicus Ab9 3 3 Yes Thermoanaerobacter wiegelii Rt8.B1 4 4 Yes Thermoanaerobacter brockii subsp. finnii Ako-1 3 3 Yes Acetohalobium arabaticum DSM 5501 6 4 Yes Halothermothrix orenii H 168 3 3 Yes Halanaerobium hydrogeniformans 2 2 Yes Halanaerobium praevalens DSM 2228 3 3 Yes Carnobacterium sp. 17-4 3 3 Yes Carnobacterium sp. WN1359 3 3 Yes Lactobacillus ruminis ATCC 27782 5 5 Yes Exiguobacterium sp. MH3 5 5 Yes Exiguobacterium sp. AT1b 4 4 Yes Exiguobacterium sibiricum 255-15 5 5 Yes Kyrpidia tusciae DSM 2912 3 3 Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 3 3 Yes Brevibacillus brevis NBRC 100599 3 3 Yes Paenibacillus sp. JDR-2 3 3 Yes Paenibacillus terrae HPL-003 3 3 Yes Paenibacillus mucilaginosus 3016 4 4 Yes Paenibacillus polymyxa M1 4 4 Yes Bacillus selenitireducens MLS10 6 6 Yes Listeria welshimeri serovar 6b str. SLCC5334 3 3 Yes Listeria innocua Clip11262 3 3 Yes Listeria seeligeri serovar 1/2b str. SLCC3954 3 3 Yes Listeria monocytogenes serotype 4b str. CLIP 80459 3 3 Yes Listeria ivanovii subsp. ivanovii PAM 55 3 3 Yes Solibacillus silvestris StLB046 4 4 Yes Geobacillus thermoglucosidasius C56-YS93 4 4 Yes Lysinibacillus sphaericus C3-41 4 4 Yes Oceanobacillus iheyensis HTE831 3 3 Yes Anoxybacillus flavithermus WK1 3 3 Yes Geobacillus thermoleovorans CCB_US3_UF5 5 5 Yes Geobacillus kaustophilus HTA426 4 4 Yes Geobacillus sp. GHH01 4 4 Yes Geobacillus sp. WCH70 5 4 Yes Geobacillus thermodenitrificans NG80-2 4 4 Yes Halobacillus halophilus DSM 2266 3 3 Yes Bacillus sp. JS 4 4 Yes Bacillus sp. 1NLA3E 3 3 Yes Bacillus amyloliquefaciens FZB42 3 3 Yes Bacillus atrophaeus 1942 3 3 Yes Bacillus subtilis subsp. subtilis str. 168 4 4 Yes Bacillus licheniformis DSM 13 = ATCC 14580 3 3 Yes Bacillus halodurans C-125 4 4 Yes Bacillus weihenstephanensis KBAB4 7 6 Yes Bacillus thuringiensis str. Al Hakam 4 4 Yes Bacillus cereus 03BB102 4 4 Yes Bacillus anthracis str. A0248 2 2 Yes Bacillus pseudofirmus OF4 5 5 Yes Bacillus clausii KSM-K16 3 3 Yes Bacillus cellulosilyticus DSM 2522 4 4 Yes Bacillus pumilus SAFR-032 7 7 Yes Bacillus megaterium DSM 319 4 4 Yes Bacillus coagulans 2-6 3 3 Yes Gemmatimonas aurantiaca T-27 3 3 Yes Melioribacter roseus P3M 3 3 Yes Ignavibacterium album JCM 16511 3 3 Yes Salinibacter ruber M8 3 3 Yes Rhodothermus marinus DSM 4252 4 4 Yes Robiginitalea biformata HTCC2501 1 1 Yes Phycisphaera mikurensis NBRC 102666 6 5 Yes Planctomyces brasiliensis DSM 5305 5 3 Yes Planctomyces limnophilus DSM 3776 5 3 Yes Rhodopirellula baltica SH 1 7 5 Yes Pirellula staleyi DSM 6068 5 3 Yes Opitutus terrae PB90-1 7 7 Yes Fretibacterium fastidiosum 6 4 Yes Thermovirga lienii DSM 17291 5 3 Yes Thermanaerovibrio acidaminovorans DSM 6589 4 3 Yes Anaerobaculum mobile DSM 13181 5 3 Yes Turneriella parva DSM 21527 8 8 Yes Leptospira borgpetersenii serovar Hardjo-bovis str. L550 7 7 Yes Leptospira interrogans serovar Lai str. IPAV 6 6 Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' 6 6 Yes Brachyspira murdochii DSM 12563 6 6 Yes Brachyspira intermedia PWS/A 6 5 Yes Brachyspira pilosicoli 95/1000 5 5 Yes Brachyspira hyodysenteriae WA1 6 6 Yes Borrelia garinii PBi 3 3 Yes Borrelia bissettii DN127 3 3 Yes Borrelia afzelii PKo 3 3 Yes Borrelia burgdorferi B31 3 3 Yes Borrelia recurrentis A1 3 3 Yes Borrelia duttonii Ly 3 3 Yes Borrelia crocidurae str. Achema 3 3 Yes Borrelia turicatae 91E135 3 3 Yes Borrelia hermsii DAH 3 3 Yes Spirochaeta smaragdinae DSM 11293 5 5 Yes Spirochaeta caldaria DSM 7334 5 5 Yes Treponema azotonutricium ZAS-9 5 5 Yes Treponema primitia ZAS-2 5 5 Yes Treponema brennaborense DSM 12168 5 5 Yes Treponema paraluiscuniculi Cuniculi A 5 5 Yes Treponema succinifaciens DSM 2489 5 5 Yes Treponema pallidum subsp. pallidum SS14 10 10 Yes Treponema denticola ATCC 35405 5 5 Yes Spirochaeta africana DSM 8902 5 5 Yes Spirochaeta thermophila DSM 6192 5 5 Yes Thermodesulfatator indicus DSM 15286 4 3 Yes Thermodesulfobacterium sp. OPB45 3 3 Yes Desulfurispirillum indicum S5 7 7 Yes Calditerrivibrio nitroreducens DSM 19672 6 4 Yes Denitrovibrio acetiphilus DSM 12809 8 6 Yes Deferribacter desulfuricans SSM1 5 5 Yes Marinitoga piezophila KA3 6 6 Yes Petrotoga mobilis SJ95 3 3 Yes Fervidobacterium pennivorans DSM 9078 5 5 Yes Fervidobacterium nodosum Rt17-B1 6 6 Yes Thermosipho melanesiensis BI429 5 5 Yes Thermosipho africanus TCF52B 4 4 Yes Thermotoga lettingae TMO 3 3 Yes Thermotoga thermarum DSM 5069 4 4 Yes Thermotoga sp. RQ2 4 4 Yes Thermotoga naphthophila RKU-10 4 4 Yes Thermotoga petrophila RKU-1 4 4 Yes Thermotoga neapolitana DSM 4359 4 4 Yes Thermotoga maritima MSB8 4 4 Yes Thermovibrio ammonificans HB-1 3 3 Yes Desulfurobacterium thermolithotrophum DSM 11699 3 3 Yes Sulfurihydrogenibium sp. YO3AOP1 3 3 Yes Sulfurihydrogenibium azorense Az-Fu1 3 3 Yes Persephonella marina EX-H1 3 3 Yes Hydrogenobaculum sp. SN 4 3 Yes Hydrogenobaculum sp. HO 4 3 Yes Hydrogenobaculum sp. Y04AAS1 4 3 Yes Thermocrinis albus DSM 14484 3 3 Yes Aquifex aeolicus VF5 3 3 Yes Candidatus Solibacter usitatus Ellin6076 5 4 Yes Granulicella tundricola MP5ACTX9 6 6 Yes Candidatus Koribacter versatilis Ellin345 3 3 Yes Terriglobus saanensis SP1PR4 3 3 Yes Terriglobus roseus DSM 18391 3 3 Yes Acidobacterium capsulatum ATCC 51196 3 3 Yes Thermodesulfovibrio yellowstonii DSM 11347 3 3 Yes Candidatus Nitrospira defluvii 3 3 Yes Leptospirillum ferrooxidans C2-3 4 4 Yes Candidatus Methylomirabilis oxyfera 3 3 Yes Acidithiobacillus caldus SM-1 4 3 Yes Bacteriovorax marinus SJ 7 7 Yes Bdellovibrio bacteriovorus HD100 8 8 Yes Nautilia profundicola AmH 5 5 Yes Sulfurospirillum deleyianum DSM 6946 4 4 Yes Sulfurospirillum barnesii SES-3 4 4 Yes Arcobacter sp. L 7 7 Yes Arcobacter nitrofigilis DSM 7299 5 5 Yes Arcobacter butzleri RM4018 5 5 Yes Campylobacter lari RM2100 5 4 Yes Campylobacter curvus 525.92 4 4 Yes Campylobacter concisus 13826 3 3 Yes Campylobacter jejuni subsp. doylei 269.97 4 4 Yes Campylobacter sp. 03-427 6 5 Yes Campylobacter fetus subsp. fetus 82-40 6 5 Yes uncultured Sulfuricurvum sp. RIFRC-1 4 4 Yes Sulfuricurvum kujiense DSM 16994 7 5 Yes Sulfurimonas autotrophica DSM 16294 4 3 Yes Sulfurimonas denitrificans DSM 1251 4 4 Yes Wolinella succinogenes DSM 1740 7 6 Yes Helicobacter cetorum MIT 00-7128 3 3 Yes Helicobacter bizzozeronii CIII-1 3 3 Yes Helicobacter hepaticus ATCC 51449 7 7 Yes Helicobacter mustelae 12198 4 4 Yes Helicobacter felis ATCC 49179 4 4 Yes Helicobacter cinaedi PAGU611 5 5 Yes Helicobacter acinonychis str. Sheeba 4 4 Yes Helicobacter pylori B38 4 4 Yes Nitratiruptor sp. SB155-2 3 3 Yes Desulfarculus baarsii DSM 2075 9 6 Yes Syntrophus aciditrophicus SB 3 3 Yes Desulfurivibrio alkaliphilus AHT2 6 4 Yes Desulfotalea psychrophila LSv54 6 4 Yes Desulfobulbus propionicus DSM 2032 6 6 Yes Desulfatibacillum alkenivorans AK-01 4 4 Yes Desulfobacterium autotrophicum HRM2 3 3 Yes Desulfohalobium retbaense DSM 5692 4 4 Yes Desulfomicrobium baculatum DSM 4028 5 5 Yes Desulfovibrio piezophilus 7 7 Yes Desulfovibrio aespoeensis Aspo-2 8 8 Yes Lawsonia intracellularis PHE/MN1-00 4 4 Yes Desulfovibrio magneticus RS-1 9 8 Yes Desulfovibrio alaskensis G20 7 7 Yes Desulfovibrio vulgaris subsp. vulgaris DP4 7 6 Yes Desulfovibrio salexigens DSM 2638 10 10 Yes Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 5 5 Yes Desulfovibrio africanus str. Walvis Bay 7 7 Yes Hippea maritima DSM 10411 4 3 Yes Geobacter daltonii FRC-32 4 4 Yes Geobacter sp. M21 6 6 Yes Geobacter uraniireducens Rf4 3 3 Yes Geobacter lovleyi SZ 4 4 Yes Geobacter bemidjiensis Bem 5 5 Yes Geobacter sulfurreducens KN400 3 3 Yes Geobacter metallireducens GS-15 4 4 Yes Pelobacter propionicus DSM 2379 3 3 Yes Pelobacter carbinolicus DSM 2380 6 6 Yes Anaeromyxobacter dehalogenans 2CP-1 4 4 Yes Dechloromonas aromatica RCB 4 3 Yes Thauera sp. MZ1T 3 3 Yes Azoarcus sp. KH32C 5 5 Yes Azoarcus sp. BH72 5 5 Yes Aromatoleum aromaticum EbN1 1 1 Yes Dechlorosoma suillum PS 6 5 Yes Pseudogulbenkiania sp. NH8B 6 6 Yes Laribacter hongkongensis HLHK9 3 3 Yes Chromobacterium violaceum ATCC 12472 8 8 Yes Candidatus Accumulibacter phosphatis clade IIA str. UW-1 4 3 Yes Methylibium petroleiphilum PM1 4 4 Yes Thiomonas arsenitoxydans 4 3 Yes Thiomonas intermedia K12 4 3 Yes Rubrivivax gelatinosus IL144 9 8 Yes Leptothrix cholodnii SP-6 4 4 Yes Burkholderia phytofirmans PsJN 4 3 Yes Burkholderia phymatum STM815 4 3 Yes Burkholderia xenovorans LB400 4 3 Yes Ralstonia eutropha JMP134 4 3 Yes Cupriavidus taiwanensis LMG 19424 4 3 Yes Cupriavidus metallidurans CH34 6 4 Yes Cupriavidus necator N-1 4 3 Yes Ralstonia eutropha H16 4 3 Yes Ralstonia pickettii 12D 6 5 Yes Ralstonia solanacearum CFBP2957 4 3 Yes Burkholderia sp. RPE64 4 3 Yes Burkholderia sp. CCGE1002 4 3 Yes Burkholderia thailandensis E264 7 6 Yes Burkholderia pseudomallei 1106a 4 3 Yes Burkholderia mallei SAVP1 4 3 Yes Burkholderia ambifaria AMMD 4 3 Yes Burkholderia cenocepacia HI2424 4 3 Yes Burkholderia multivorans ATCC 17616 4 3 Yes Burkholderia vietnamiensis G4 5 3 Yes Burkholderia gladioli BSR3 5 4 Yes Burkholderia glumae BGR1 8 7 Yes Verminephrobacter eiseniae EF01-2 5 5 Yes Alicycliphilus denitrificans K601 4 4 Yes Delftia sp. Cs1-4 6 6 Yes Delftia acidovorans SPH-1 4 4 Yes Variovorax paradoxus S110 4 3 Yes Rhodoferax ferrireducens T118 5 4 Yes Acidovorax ebreus TPSY 4 4 Yes Acidovorax sp. KKS102 4 4 Yes Acidovorax sp. JS42 5 5 Yes Acidovorax citrulli AAC00-1 4 4 Yes Acidovorax avenae subsp. avenae ATCC 19860 4 4 Yes Comamonas testosteroni CNB-2 4 4 Yes Herminiimonas arsenicoxydans 5 3 Yes Collimonas fungivorans Ter331 4 3 Yes Janthinobacterium sp. Marseille 4 3 Yes Herbaspirillum seropedicae SmR1 4 3 Yes Pusillimonas sp. T7-7 3 3 Yes Bordetella petrii DSM 12804 3 3 Yes Bordetella avium 197N 3 3 Yes Bordetella pertussis Tohama I 4 3 Yes Bordetella parapertussis 12822 4 3 Yes Bordetella bronchiseptica RB50 4 3 Yes Achromobacter xylosoxidans A8 3 3 Yes Achromobacter xylosoxidans 6 5 Yes Thiobacillus denitrificans ATCC 25259 5 3 Yes Nitrosospira multiformis ATCC 25196 4 3 Yes Nitrosomonas sp. Is79A3 4 3 Yes Nitrosomonas eutropha C91 3 3 Yes Nitrosomonas europaea ATCC 19718 3 3 Yes Sideroxydans lithotrophicus ES-1 4 3 Yes Gallionella capsiferriformans ES-2 4 3 Yes Methylotenera versatilis 301 4 3 Yes Methylotenera mobilis JLW8 4 3 Yes Methylovorus sp. MP688 4 3 Yes Methylovorus glucosetrophus SIP3-4 4 3 Yes Methylobacillus flagellatus KT 4 3 Yes Magnetococcus marinus MC-1 18 18 Yes Parvularcula bermudensis HTCC2503 4 4 Yes Asticcacaulis excentricus CB 48 5 5 Yes Brevundimonas subvibrioides ATCC 15264 5 5 Yes Caulobacter sp. K31 8 8 Yes Caulobacter crescentus NA1000 9 9 Yes Caulobacter segnis ATCC 21756 9 9 Yes Phenylobacterium zucineum HLK1 5 5 Yes Sphingopyxis alaskensis RB2256 3 3 Yes Novosphingobium sp. PP1Y 4 4 Yes Novosphingobium aromaticivorans DSM 12444 1 1 Yes Sphingobium sp. SYK-6 3 3 Yes Sphingobium japonicum UT26S 3 3 Yes Sphingobium chlorophenolicum L-1 3 3 Yes Sphingomonas sp. MM-1 9 9 Yes Sphingomonas wittichii RW1 4 4 Yes Zymomonas mobilis subsp. mobilis NCIMB 11163 3 3 Yes Maricaulis maris MCS10 8 8 Yes Hirschia baltica ATCC 49814 8 8 Yes Hyphomonas neptunium ATCC 15444 3 3 Yes Dinoroseobacter shibae DFL 12 3 3 Yes Phaeobacter gallaeciensis 2.10 3 3 Yes Pseudovibrio sp. FO-BEG1 7 7 Yes Jannaschia sp. CCS1 3 3 Yes Ruegeria sp. TM1040 8 8 Yes Ruegeria pomeroyi DSS-3 3 3 Yes Ketogulonicigenium vulgare Y25 4 4 Yes Ketogulonigenium vulgarum WSH-001 3 3 Yes Roseobacter litoralis Och 149 3 3 Yes Roseobacter denitrificans OCh 114 3 3 Yes Rhodobacter sphaeroides ATCC 17029 6 5 Yes Rhodobacter capsulatus SB 1003 2 2 Yes Paracoccus denitrificans PD1222 3 3 Yes Rhodospirillum photometricum DSM 122 4 4 Yes Tistrella mobilis KA081020-065 4 4 Yes Magnetospirillum magneticum AMB-1 3 3 Yes Rhodospirillum centenum SW 5 5 Yes Rhodospirillum rubrum F11 6 6 Yes Azospirillum lipoferum 4B 12 10 Yes Azospirillum sp. B510 10 9 Yes Azospirillum brasilense Sp245 11 10 Yes Gluconacetobacter diazotrophicus PAl 5 3 3 Yes Acidiphilium multivorum AIU301 3 3 Yes Acidiphilium cryptum JF-5 2 2 Yes Gluconobacter oxydans 621H 5 4 Yes Polymorphum gilvum SL003B-26A1 13 13 Yes Micavibrio aeruginosavorus ARL-13 5 5 Yes Candidatus Puniceispirillum marinum IMCC1322 4 3 Yes Candidatus Midichloria mitochondrii IricVA 2 1 Yes Azorhizobium caulinodans ORS 571 5 5 Yes Methylobacterium chloromethanicum CM4 11 9 Yes Methylobacterium extorquens AM1 8 7 Yes Methylobacterium sp. 4-46 14 11 Yes Methylobacterium populi BJ001 10 8 Yes Methylobacterium nodulans ORS 2060 4 3 Yes Methylobacterium radiotolerans JCM 2831 10 10 Yes Parvibaculum lavamentivorans DS-1 5 5 Yes Ochrobactrum anthropi ATCC 49188 3 3 Yes Brucella microti CCM 4915 3 3 Yes Brucella pinnipedialis B2/94 2 2 Yes Brucella canis ATCC 23365 3 3 Yes Brucella suis ATCC 23445 3 3 Yes Brucella melitensis ATCC 23457 3 3 Yes Brucella ovis ATCC 25840 3 3 Yes Brucella abortus S19 3 3 Yes Sinorhizobium fredii NGR234 6 6 Yes Sinorhizobium medicae WSM419 6 6 Yes Sinorhizobium meliloti AK83 6 6 Yes Genome sequence of Rhizobium sp. strain IRBG74 6 6 Yes Rhizobium etli CIAT 652 9 9 Yes Rhizobium leguminosarum bv. viciae 3841 11 11 Yes Agrobacterium tumefaciens str. C58 6 6 Yes Agrobacterium radiobacter K84 7 7 Yes Agrobacterium sp. H13-3 5 5 Yes Agrobacterium vitis S4 9 9 Yes Candidatus Liberibacter asiaticus str. psy62 3 3 Yes Mesorhizobium sp. BNC1 4 4 Yes Mesorhizobium opportunistum WSM2075 4 4 Yes Mesorhizobium ciceri biovar biserrulae WSM1271 4 4 Yes Mesorhizobium loti MAFF303099 4 4 Yes Methylocella silvestris BL2 3 3 Yes Beijerinckia indica subsp. indica ATCC 9039 3 3 Yes Pelagibacterium halotolerans B2 5 4 Yes Rhodomicrobium vannielii ATCC 17100 3 3 Yes Hyphomicrobium sp. MC1 3 3 Yes Hyphomicrobium denitrificans ATCC 51888 3 3 Yes Oligotropha carboxidovorans OM4 3 3 Yes Rhodopseudomonas palustris BisA53 14 11 Yes Nitrobacter winogradskyi Nb-255 6 4 Yes Nitrobacter hamburgensis X14 7 4 Yes Bradyrhizobium japonicum USDA 110 17 13 Yes Bradyrhizobium sp. ORS 278 10 9 Yes Bartonella clarridgeiae 73 3 3 Yes Bartonella bacilliformis KC583 3 3 Yes Saccharophagus degradans 2-40 4 4 Yes Teredinibacter turnerae T7901 6 4 Yes Cellvibrio japonicus Ueda107 5 4 Yes Oceanimonas sp. GK1 7 6 Yes Aeromonas veronii B565 6 5 Yes Aeromonas salmonicida subsp. salmonicida A449 6 5 Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966 5 5 Yes Aliivibrio salmonicida LFI1238 8 8 Yes Vibrio fischeri MJ11 8 8 Yes Vibrio sp. Ex25 12 12 Yes Vibrio harveyi ATCC BAA-1116 12 12 Yes Vibrio parahaemolyticus RIMD 2210633 12 12 Yes Vibrio splendidus LGP32 7 7 Yes Vibrio anguillarum 775 7 7 Yes Vibrio furnissii NCTC 11218 15 15 Yes Vibrio vulnificus MO6-24/O 8 8 Yes Vibrio cholerae O395 7 7 Yes Photobacterium profundum SS9 8 8 Yes Psychromonas ingrahamii 37 5 5 Yes Psychromonas sp. CNPT3 5 4 Yes Idiomarina loihiensis L2TR 4 3 Yes Ferrimonas balearica DSM 9799 8 7 Yes Shewanella piezotolerans WP3 8 7 Yes Shewanella loihica PV-4 5 4 Yes Shewanella halifaxensis HAW-EB4 8 7 Yes Shewanella sediminis HAW-EB3 9 8 Yes Shewanella denitrificans OS217 8 7 Yes Shewanella pealeana ATCC 700345 8 7 Yes Shewanella oneidensis MR-1 5 4 Yes Shewanella baltica OS185 7 6 Yes Shewanella woodyi ATCC 51908 6 5 Yes Shewanella sp. MR-4 5 4 Yes Shewanella amazonensis SB2B 5 4 Yes Shewanella violacea DSS12 5 5 Yes Shewanella frigidimarina NCIMB 400 5 4 Yes Shewanella putrefaciens CN-32 9 8 Yes Colwellia psychrerythraea 34H 4 4 Yes Pseudoalteromonas sp. SM9913 8 7 Yes Pseudoalteromonas atlantica T6c 6 6 Yes Pseudoalteromonas haloplanktis TAC125 5 4 Yes Glaciecola sp. 4H-3-7+YE-5 7 6 Yes Glaciecola nitratireducens FR1064 8 7 Yes Marinobacter adhaerens HP15 5 4 Yes Marinobacter sp. BSs20148 6 4 Yes Marinobacter hydrocarbonoclasticus ATCC 49840 4 4 Yes Marinobacter aquaeolei VT8 4 4 Yes Alteromonas sp. SN2 7 6 Yes Alteromonas macleodii str. 'Deep ecotype' 7 7 Yes Hahella chejuensis KCTC 2396 8 5 Yes Marinomonas posidonica IVIA-Po-181 5 4 Yes Marinomonas sp. MWYL1 4 4 Yes Marinomonas mediterranea MMB-1 6 5 Yes Chromohalobacter salexigens DSM 3043 3 3 Yes Halomonas elongata DSM 2581 4 4 Yes Methylomicrobium alcaliphilum 4 4 Yes Methylomonas methanica MC09 4 4 Yes Rhodanobacter denitrificans 4 3 Yes Frateuria aurantia DSM 6220 4 3 Yes Pseudoxanthomonas spadix BD-a59 5 4 Yes Pseudoxanthomonas suwonensis 11-1 4 3 Yes Stenotrophomonas maltophilia K279a 6 5 Yes Xanthomonas axonopodis pv. citri str. 306 4 3 Yes Xanthomonas albilineans GPE PC73 4 3 Yes Xanthomonas oryzae pv. oryzae PXO99A 8 6 Yes Xanthomonas campestris pv. campestris str. B100 5 4 Yes Halothiobacillus neapolitanus c2 3 3 Yes Alkalilimnicola ehrlichii MLHE-1 4 4 Yes Thioalkalivibrio sulfidophilus HL-EbGr7 3 3 Yes Thioalkalivibrio sp. K90mix 5 5 Yes Halorhodospira halophila SL1 4 4 Yes Allochromatium vinosum DSM 180 5 3 Yes Thiocystis violascens DSM 198 8 5 Yes Nitrosococcus watsonii C-113 3 3 Yes Nitrosococcus halophilus Nc4 3 3 Yes Nitrosococcus oceani ATCC 19707 3 3 Yes Legionella pneumophila str. Corby 4 3 Yes gamma proteobacterium HdN1 5 4 Yes Photorhabdus asymbiotica 3 3 Yes Photorhabdus luminescens subsp. laumondii TTO1 3 3 Yes Xenorhabdus bovienii SS-2004 3 3 Yes Xenorhabdus nematophila ATCC 19061 3 3 Yes Providencia stuartii MRSN 2154 3 3 Yes Proteus mirabilis HI4320 4 4 Yes Edwardsiella ictaluri 93-146 7 7 Yes Edwardsiella tarda EIB202 4 4 Yes Rahnella sp. Y9602 3 3 Yes Rahnella aquatilis CIP 78.65 = ATCC 33071 3 3 Yes Yersinia pseudotuberculosis IP 31758 7 7 Yes Yersinia pestis Pestoides F 7 7 Yes Yersinia enterocolitica subsp. enterocolitica 8081 5 5 Yes Serratia sp. AS12 3 3 Yes Serratia sp. ATCC 39006 4 3 Yes Serratia plymuthica AS9 3 3 Yes Serratia proteamaculans 568 3 3 Yes Dickeya dadantii Ech703 3 3 Yes Dickeya zeae Ech1591 4 3 Yes Pectobacterium wasabiae WPP163 3 3 Yes Pectobacterium sp. SCC3193 3 3 Yes Pectobacterium atrosepticum SCRI1043 4 4 Yes Pectobacterium carotovorum subsp. carotovorum PC1 3 3 Yes Sodalis glossinidius str. 'morsitans' 3 3 Yes Pantoea sp. At-9b 3 3 Yes Pantoea vagans C9-1 4 4 Yes Pantoea ananatis LMG 20103 10 9 Yes Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis 3 3 Yes Erwinia tasmaniensis Et1/99 3 3 Yes Erwinia sp. Ejp617 6 6 Yes Erwinia billingiae Eb661 3 3 Yes Erwinia pyrifoliae Ep1/96 6 6 Yes Erwinia amylovora ATCC 49946 6 6 Yes Cronobacter turicensis z3032 4 4 Yes Cronobacter sakazakii ES15 4 4 Yes Enterobacteriaceae bacterium strain FGI 57 3 3 Yes Shigella sonnei Ss046 3 3 Yes Shigella flexneri 5 str. 8401 2 2 Yes Shigella dysenteriae Sd197 1 1 Yes Shigella boydii CDC 3083-94 4 3 Yes Salmonella bongori NCTC 12419 3 3 Yes Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 4 4 Yes Enterobacter aerogenes KCTC 2190 3 3 Yes Escherichia fergusonii ATCC 35469 3 3 Yes Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3 3 Yes Enterobacter sp. R4-368 10 10 Yes Enterobacter sp. 638 3 3 Yes Enterobacter asburiae LF7a 3 3 Yes Enterobacter cloacae subsp. dissolvens SDM 6 6 Yes Citrobacter rodentium ICC168 5 5 Yes Citrobacter koseri ATCC BAA-895 7 7 Yes Azotobacter vinelandii DJ 3 3 Yes Pseudomonas sp. TKP 4 3 Yes Pseudomonas sp. UW4 4 3 Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421 4 3 Yes Pseudomonas entomophila L48 4 3 Yes Pseudomonas syringae pv. tomato str. DC3000 4 3 Yes Pseudomonas stutzeri A1501 5 4 Yes Pseudomonas fulva 12-X 7 6 Yes Pseudomonas putida F1 4 3 Yes Pseudomonas protegens Pf-5 4 3 Yes Pseudomonas fluorescens SBW25 4 3 Yes Pseudomonas mendocina ymp 7 6 Yes Pseudomonas aeruginosa UCBPP-PA14 4 3 Yes Pseudomonas sp. VLB120 4 3 Yes Methylophaga sp. JAM1 4 4 Yes Cycloclasticus sp. P1 4 3 Yes Thiomicrospira crunogena XCL-2 5 5 Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 2 2 Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 1 1 Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1 Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1 Yes Paracoccidioides brasiliensis Pb03 1 1 Yes Schizosaccharomyces pombe 972h- 1 1 Yes Batrachochytrium dendrobatidis JAM81 1 1 Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 2 2 Yes Mycoplasma gallisepticum NC08_2008.031-4-3P 1 1 Yes Mycoplasma gallisepticum CA06_2006.052-5-2P 1 1 Yes Mycoplasma gallisepticum NC06_2006.080-5-2P 1 1 Yes Mycoplasma gallisepticum WI01_2001.043-13-2P 1 1 Yes Mycoplasma gallisepticum NY01_2001.047-5-1P 1 1 Yes Mycoplasma gallisepticum NC96_1596-4-2P 1 1 Yes Mycoplasma gallisepticum NC95_13295-2-2P 1 1 Yes Mycoplasma gallisepticum VA94_7994-1-7P 1 1 Yes Streptomyces fulvissimus DSM 40593 1 1 Yes Actinoplanes friuliensis DSM 7358 3 3 Yes Rhodococcus erythropolis CCM2595 1 1 Yes Leifsonia xyli subsp. cynodontis DSM 46306 2 2 Yes Chthonomonas calidirosea T49 4 4 Yes Eubacterium siraeum V10Sc8a 3 3 Yes Clostridium thermocellum DSM 1313 5 5 Yes [Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532 4 4 Yes Sulfobacillus acidophilus TPY 3 3 Yes Clostridium acidurici 9a 4 4 Yes Desulfosporosinus meridiei DSM 13257 4 3 Yes Desulfitobacterium dichloroeliminans LMG P-21439 4 4 Yes Desulfitobacterium hafniense DCB-2 5 4 Yes Desulfotomaculum gibsoniae DSM 7213 4 4 Yes Clostridium difficile BI1 3 3 Yes Clostridium difficile R20291 3 3 Yes Clostridium difficile CD196 3 3 Yes Roseburia intestinalis XB6B4 7 7 Yes Candidatus Arthromitus sp. SFB-rat-Yit 7 7 Yes Candidatus Arthromitus sp. SFB-mouse-Yit 6 6 Yes Clostridium saccharobutylicum DSM 13864 6 5 Yes Clostridium autoethanogenum DSM 10061 7 7 Yes Clostridium saccharoperbutylacetonicum N1-4(HMT) 9 7 Yes Clostridium kluyveri NBRC 12016 4 4 Yes Clostridium tetani genome 12124569 5 5 Yes Clostridium pasteurianum BC1 5 5 Yes Clostridium botulinum H04402 065 7 7 Yes Clostridium botulinum BKT015925 5 5 Yes Clostridium botulinum F str. 230613 5 5 Yes Clostridium botulinum F str. Langeland 6 6 Yes Clostridium botulinum E3 str. Alaska E43 6 6 Yes Clostridium botulinum B1 str. Okra 6 6 Yes Clostridium botulinum Ba4 str. 657 7 7 Yes Clostridium botulinum A2 str. Kyoto 6 6 Yes Clostridium botulinum A3 str. Loch Maree 8 8 Yes Clostridium botulinum A str. Hall 8 8 Yes Clostridium botulinum A str. ATCC 19397 8 8 Yes Clostridium acetobutylicum DSM 1731 6 6 Yes Clostridium acetobutylicum EA 2018 6 6 Yes Thermoanaerobacterium saccharolyticum JW/SL-YS485 3 3 Yes Thermoanaerobacterium thermosaccharolyticum M0795 3 3 Yes Thermacetogenium phaeum DSM 12270 3 3 Yes Thermoanaerobacter sp. X513 3 3 Yes Halobacteroides halobius DSM 5150 5 5 Yes Enterococcus casseliflavus EC20 3 3 Yes Exiguobacterium antarcticum B7 4 4 Yes Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 3 3 Yes Thermobacillus composti KWC4 3 3 Yes Paenibacillus sp. Y412MC10 3 3 Yes Paenibacillus mucilaginosus KNP414 6 6 Yes Paenibacillus mucilaginosus K02 9 9 Yes Paenibacillus larvae subsp. larvae DSM 25430 3 3 Yes Paenibacillus polymyxa CR1 3 3 Yes Paenibacillus polymyxa SC2 4 4 Yes Paenibacillus polymyxa E681 3 3 Yes Listeria monocytogenes EGD sequence 3 3 Yes Listeria monocytogenes N53-1 3 3 Yes Listeria monocytogenes La111 3 3 Yes Listeria monocytogenes serotype 4b str. LL195 3 3 Yes Listeria monocytogenes 07PF0776 3 3 Yes Listeria monocytogenes M7 3 3 Yes Listeria monocytogenes J1-220 3 3 Yes Listeria monocytogenes J1816 3 3 Yes Listeria monocytogenes SLCC2376 3 3 Yes Listeria monocytogenes SLCC5850 3 3 Yes Listeria monocytogenes ATCC 19117 3 3 Yes Listeria monocytogenes L312 3 3 Yes Listeria monocytogenes SLCC2479 3 3 Yes Listeria monocytogenes SLCC7179 3 3 Yes Listeria monocytogenes SLCC2540 3 3 Yes Listeria monocytogenes SLCC2378 3 3 Yes Listeria monocytogenes serotype 1/2b str. SLCC2755 3 3 Yes Listeria monocytogenes serotype 1/2c str. SLCC2372 3 3 Yes Listeria monocytogenes serotype 7 str. SLCC2482 3 3 Yes Listeria monocytogenes 08-5578 3 3 Yes Listeria monocytogenes 08-5923 3 3 Yes Listeria monocytogenes L99 3 3 Yes Listeria monocytogenes HCC23 3 3 Yes Listeria monocytogenes 10403S 3 3 Yes Listeria monocytogenes J0161 3 3 Yes Listeria monocytogenes Finland 1998 3 3 Yes Listeria monocytogenes FSL R2-561 3 3 Yes Listeria monocytogenes serotype 4b str. F2365 3 3 Yes Listeria monocytogenes EGD-e 3 3 Yes Geobacillus sp. C56-T3 4 4 Yes Geobacillus sp. Y4.1MC1 4 4 Yes Geobacillus sp. Y412MC52 4 4 Yes Geobacillus sp. Y412MC61 4 4 Yes Amphibacillus xylanus NBRC 15112 4 4 Yes Bacillus amyloliquefaciens subsp. plantarum sequencing 3 3 Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5033 3 3 Yes Bacillus amyloliquefaciens subsp. plantarum AS43.3 3 3 Yes Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2 3 3 Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5113 3 3 Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5036 3 3 Yes Bacillus amyloliquefaciens subsp. plantarum CAU B946 3 3 Yes Bacillus amyloliquefaciens LFB112 3 3 Yes Bacillus amyloliquefaciens CC178 3 3 Yes Bacillus amyloliquefaciens Y2 3 3 Yes Bacillus amyloliquefaciens IT-45 3 3 Yes Bacillus amyloliquefaciens XH7 3 3 Yes Bacillus amyloliquefaciens LL3 3 3 Yes Bacillus amyloliquefaciens TA208 3 3 Yes Bacillus amyloliquefaciens DSM 7 3 3 Yes Bacillus licheniformis 9945A 3 3 Yes Bacillus subtilis PY79 4 4 Yes Bacillus subtilis XF-1 3 3 Yes Bacillus subtilis QB928 4 4 Yes Bacillus subtilis BSn5 3 3 Yes Bacillus subtilis subsp. subtilis str. BAB-1 4 4 Yes Bacillus subtilis subsp. subtilis str. BSP1 4 4 Yes Bacillus subtilis subsp. subtilis str. RO-NN-1 4 4 Yes Bacillus subtilis subsp. subtilis 6051-HGW 4 4 Yes Bacillus subtilis subsp. spizizenii TU-B-10 4 4 Yes Bacillus subtilis subsp. spizizenii str. W23 3 3 Yes Bacillus subtilis subsp. natto BEST195 4 4 Yes Bacillus licheniformis DSM 13 = ATCC 14580 3 3 Yes Bacillus infantis NRRL B-14911 4 4 Yes Bacillus cereus subsp. cytotoxis NVH 391-98 4 4 Yes Bacillus toyonensis BCT-7112 4 4 Yes Bacillus thuringiensis HD-771 4 4 Yes Bacillus thuringiensis HD-789 3 3 Yes Bacillus thuringiensis MC28 4 4 Yes Bacillus thuringiensis serovar chinensis CT-43 4 4 Yes Bacillus thuringiensis YBT-1518 3 3 Yes Bacillus thuringiensis Bt407 4 4 Yes Bacillus thuringiensis serovar konkukian str. 97-27 4 4 Yes Bacillus thuringiensis serovar kurstaki str. HD73 4 4 Yes Bacillus thuringiensis BMB171 6 6 Yes Bacillus thuringiensis serovar finitimus YBT-020 4 4 Yes Bacillus thuringiensis serovar thuringiensis str. IS5056 4 4 Yes Bacillus cereus FRI-35 4 4 Yes Bacillus cereus biovar anthracis str. CI 4 4 Yes Bacillus cereus AH820 4 4 Yes Bacillus cereus AH187 4 4 Yes Bacillus cereus B4264 4 4 Yes Bacillus cereus G9842 3 3 Yes Bacillus cereus Q1 4 4 Yes Bacillus cereus F837/76 3 3 Yes Bacillus cereus NC7401 4 4 Yes Bacillus cereus E33L 4 4 Yes Bacillus cereus ATCC 14579 6 6 Yes Bacillus cereus ATCC 10987 4 4 Yes Bacillus anthracis str. H9401 4 4 Yes Bacillus anthracis str. CDC 684 4 4 Yes Bacillus anthracis str. 'Ames Ancestor' 2 2 Yes Bacillus anthracis str. Sterne 2 2 Yes Bacillus anthracis str. Ames 2 2 Yes Bacillus megaterium WSH-002 4 4 Yes Bacillus megaterium QM B1551 4 4 Yes Bacillus coagulans 36D1 3 3 Yes Salinibacter ruber DSM 13855 4 4 Yes Rhodothermus marinus SG0.5JP17-172 3 3 Yes Leptospira borgpetersenii serovar Hardjo-bovis str. JB197 7 7 Yes Leptospira interrogans serovar Lai str. 56601 6 6 Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 7 7 Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' 5 5 Yes Brachyspira pilosicoli WesB 5 5 Yes Brachyspira pilosicoli B2904 5 5 Yes Brachyspira pilosicoli P43/6/78 5 5 Yes Borrelia garinii NMJW1 3 3 Yes Borrelia garinii BgVir 3 3 Yes Borrelia afzelii HLJ01 3 3 Yes Borrelia afzelii PKo 3 3 Yes Borrelia burgdorferi CA382 3 3 Yes Borrelia burgdorferi JD1 3 3 Yes Borrelia burgdorferi N40 3 3 Yes Borrelia burgdorferi ZS7 3 3 Yes Borrelia miyamotoi LB-2001 3 3 Yes Treponema pedis str. T A4 5 5 Yes Treponema pallidum str. Fribourg-Blanc 5 5 Yes Treponema pallidum subsp. pertenue str. Gauthier 5 5 Yes Treponema pallidum subsp. pertenue str. CDC2 5 5 Yes Treponema pallidum subsp. pertenue str. SamoaD 5 5 Yes Treponema pallidum subsp. pallidum str. Mexico A 5 5 Yes Treponema pallidum subsp. pallidum str. Chicago 5 5 Yes Treponema pallidum subsp. pallidum DAL-1 5 5 Yes Treponema pallidum subsp. pallidum str. Nichols 5 5 Yes Spirochaeta thermophila DSM 6578 5 5 Yes Thermotoga maritima MSB8 4 4 Yes Leptospirillum ferriphilum ML-04 4 4 Yes Bdellovibrio exovorus JSS 7 7 Yes Bdellovibrio bacteriovorus str. Tiberius 8 8 Yes Arcobacter butzleri 7h1h 5 5 Yes Arcobacter butzleri ED-1 5 5 Yes Campylobacter jejuni Waterborne C.jejuni Outbreak 6 5 Yes Campylobacter jejuni RM1221 6 5 Yes Campylobacter jejuni subsp. jejuni 00-2544 3 3 Yes Campylobacter jejuni subsp. jejuni 00-2538 3 3 Yes Campylobacter jejuni subsp. jejuni 00-2426 3 3 Yes Campylobacter jejuni subsp. jejuni 00-2425 5 5 Yes Campylobacter jejuni subsp. jejuni PT14 5 5 Yes Campylobacter jejuni subsp. jejuni ICDCCJ07001 6 5 Yes Campylobacter jejuni subsp. jejuni S3 6 5 Yes Campylobacter jejuni subsp. jejuni M1 8 7 Yes Campylobacter jejuni subsp. jejuni IA3902 6 5 Yes Campylobacter jejuni subsp. jejuni 81116 6 5 Yes Campylobacter jejuni subsp. jejuni 81-176 5 5 Yes Campylobacter jejuni subsp. jejuni NCTC 11168-BN148 5 5 Yes Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 5 5 Yes Campylobacter coli 76339 6 6 Yes Campylobacter coli 15-537360 5 5 Yes Campylobacter coli CVM N29710 6 5 Yes Helicobacter cetorum MIT 99-5656 3 3 Yes Helicobacter pylori BM012S 4 4 Yes Helicobacter pylori BM012A 4 4 Yes Helicobacter pylori SouthAfrica20 5 5 Yes Helicobacter pylori UM298 4 4 Yes Helicobacter pylori UM066 4 4 Yes Helicobacter pylori UM037 4 4 Yes Helicobacter pylori UM299 4 4 Yes Helicobacter pylori UM032 4 4 Yes Helicobacter pylori OK310 4 4 Yes Helicobacter pylori OK113 4 4 Yes Helicobacter pylori Rif2 4 4 Yes Helicobacter pylori Rif1 4 4 Yes Helicobacter pylori HUP-B14 4 4 Yes Helicobacter pylori PeCan18 4 4 Yes Helicobacter pylori Shi169 4 4 Yes Helicobacter pylori Shi112 4 4 Yes Helicobacter pylori Shi417 4 4 Yes Helicobacter pylori XZ274 4 4 Yes Helicobacter pylori Aklavik86 4 4 Yes Helicobacter pylori Aklavik117 4 4 Yes Helicobacter pylori SNT49 4 4 Yes Helicobacter pylori Puno135 4 4 Yes Helicobacter pylori Puno120 4 4 Yes Helicobacter pylori ELS37 4 4 Yes Helicobacter pylori Gambia94/24 4 4 Yes Helicobacter pylori SouthAfrica7 4 4 Yes Helicobacter pylori India7 4 4 Yes Helicobacter pylori Lithuania75 3 3 Yes Helicobacter pylori 2017 4 4 Yes Helicobacter pylori 2018 5 5 Yes Helicobacter pylori 908 4 4 Yes Helicobacter pylori F57 4 4 Yes Helicobacter pylori F30 4 4 Yes Helicobacter pylori F16 4 4 Yes Helicobacter pylori Sat464 4 4 Yes Helicobacter pylori Cuz20 4 4 Yes Helicobacter pylori PeCan4 4 4 Yes Helicobacter pylori SJM180 4 4 Yes Helicobacter pylori B8 4 4 Yes Helicobacter pylori 52 4 4 Yes Helicobacter pylori v225d 4 4 Yes Helicobacter pylori 83 4 4 Yes Helicobacter pylori 35A 4 4 Yes Helicobacter pylori P12 4 4 Yes Helicobacter pylori G27 4 4 Yes Helicobacter pylori Shi470 4 4 Yes Helicobacter pylori HPAG1 4 4 Yes Helicobacter pylori 51 4 4 Yes Helicobacter pylori F32 4 4 Yes Helicobacter pylori J99 4 4 Yes Helicobacter pylori 26695 4 4 Yes Helicobacter pylori 26695 4 4 Yes Desulfocapsa sulfexigens DSM 10523 5 4 Yes Desulfobacula toluolica Tol2 4 3 Yes Lawsonia intracellularis N343 4 4 Yes Desulfovibrio hydrothermalis AM13 = DSM 14728 10 10 Yes Desulfovibrio vulgaris RCH1 6 6 Yes Desulfovibrio vulgaris str. 'Miyazaki F' 9 9 Yes Desulfovibrio vulgaris str. Hildenborough 6 6 Yes Desulfovibrio gigas DSM 1382 = ATCC 19364 7 7 Yes Desulfovibrio desulfuricans ND132 8 8 Yes Geobacter sp. M18 5 5 Yes Geobacter sulfurreducens PCA 3 3 Yes Anaeromyxobacter sp. K 4 4 Yes Anaeromyxobacter dehalogenans 2CP-C 4 4 Yes Burkholderia phenoliruptrix BR3459a 4 3 Yes Pandoraea pnomenusa 3kgm 4 3 Yes Ralstonia pickettii 12J 3 3 Yes Ralstonia solanacearum FQY_4 4 3 Yes Ralstonia solanacearum Po82 4 3 Yes Ralstonia solanacearum PSI07 4 3 Yes Ralstonia solanacearum CMR15 4 3 Yes Ralstonia solanacearum GMI1000 4 3 Yes Burkholderia sp. YI23 4 3 Yes Burkholderia sp. CCGE1003 4 3 Yes Burkholderia sp. CCGE1001 4 3 Yes Burkholderia sp. KJ006 4 3 Yes Burkholderia thailandensis MSMB121 4 3 Yes Burkholderia pseudomallei MSHR305 7 6 Yes Burkholderia pseudomallei NCTC 13179 7 6 Yes Burkholderia pseudomallei BPC006 4 3 Yes Burkholderia pseudomallei 1026b 4 3 Yes Burkholderia pseudomallei MSHR346 4 3 Yes Burkholderia pseudomallei 668 7 6 Yes Burkholderia pseudomallei 1710b 4 3 Yes Burkholderia pseudomallei K96243 4 3 Yes Burkholderia mallei NCTC 10229 4 3 Yes Burkholderia mallei NCTC 10247 4 3 Yes Burkholderia mallei ATCC 23344 4 3 Yes Burkholderia lata 4 3 Yes Burkholderia ambifaria MC40-6 4 3 Yes Burkholderia cenocepacia MC0-3 7 6 Yes Burkholderia cenocepacia AU 1054 4 3 Yes Burkholderia cenocepacia J2315 4 3 Yes Burkholderia multivorans ATCC 17616 4 3 Yes Burkholderia cepacia GG4 4 3 Yes Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR 4 4 Yes Alicycliphilus denitrificans BC 4 4 Yes Variovorax paradoxus B4 4 3 Yes Bordetella pertussis CS 4 3 Yes Bordetella parapertussis 18323 4 3 Yes Bordetella parapertussis Bpp5 1 1 Yes Bordetella bronchiseptica MO149 4 3 Yes Bordetella bronchiseptica 253 4 3 Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061 6 5 Yes Nitrosomonas sp. AL212 4 2 Yes Sulfuricella denitrificans skB26 5 3 Yes Caulobacter crescentus CB15 8 8 Yes Zymomonas mobilis subsp. mobilis ATCC 29191 3 3 Yes Zymomonas mobilis subsp. mobilis CP4 3 3 Yes Zymomonas mobilis subsp. mobilis ATCC 10988 3 3 Yes Zymomonas mobilis subsp. mobilis ZM4 3 3 Yes Zymomonas mobilis subsp. pomaceae ATCC 29192 3 3 Yes Phaeobacter gallaeciensis DSM 17395 3 3 Yes Phaeobacter gallaeciensis DSM 26640 3 3 Yes Leisingera methylohalidivorans DSM 14336 4 4 Yes Octadecabacter antarcticus 307 3 3 Yes Octadecabacter arcticus 238 4 4 Yes Rhodobacter sphaeroides KD131 6 5 Yes Rhodobacter sphaeroides ATCC 17025 6 5 Yes Rhodobacter sphaeroides 2.4.1 6 5 Yes Paracoccus aminophilus JCM 7686 1 1 Yes Magnetospirillum gryphiswaldense MSR-1 v2 9 9 Yes Rhodospirillum rubrum ATCC 11170 6 6 Yes Gluconacetobacter diazotrophicus PAl 5 3 3 Yes Gluconobacter oxydans H24 3 3 Yes Micavibrio aeruginosavorus EPB 6 5 Yes Methylobacterium extorquens DM4 7 7 Yes Methylobacterium extorquens PA1 10 8 Yes Brucella ceti TE10759-12 3 3 Yes Brucella ceti TE28753-12 3 3 Yes Brucella canis HSK A52141 3 3 Yes Brucella suis VBI22 3 3 Yes Brucella suis 1330 3 3 Yes Brucella suis 1330 3 3 Yes Brucella melitensis NI 3 3 Yes Brucella melitensis M5-90 3 3 Yes Brucella melitensis M28 3 3 Yes Brucella melitensis bv. 1 str. 16M 3 3 Yes Brucella abortus A13334 3 3 Yes Brucella melitensis biovar Abortus 2308 3 3 Yes Brucella abortus bv. 1 str. 9-941 3 3 Yes Sinorhizobium fredii USDA 257 7 7 Yes Sinorhizobium fredii HH103 6 6 Yes Sinorhizobium meliloti 2011 6 6 Yes Sinorhizobium meliloti GR4 6 6 Yes Sinorhizobium meliloti Rm41 6 6 Yes Sinorhizobium meliloti SM11 7 7 Yes Sinorhizobium meliloti BL225C 6 6 Yes Sinorhizobium meliloti 1021 6 6 Yes Rhizobium etli CFN 42 9 9 Yes Rhizobium etli bv. mimosae str. Mim1 8 8 Yes Rhizobium tropici CIAT 899 7 7 Yes Rhizobium leguminosarum bv. trifolii WSM2304 11 11 Yes Rhizobium leguminosarum bv. trifolii WSM1325 11 11 Yes Liberibacter crescens BT-1 3 3 Yes Candidatus Liberibacter solanacearum CLso-ZC1 2 2 Yes Candidatus Liberibacter americanus str. Sao Paulo 2 2 Yes Candidatus Liberibacter asiaticus str. gxpsy 3 3 Yes Mesorhizobium australicum WSM2073 4 4 Yes Hyphomicrobium nitrativorans NL23 5 5 Yes Hyphomicrobium denitrificans 1NES1 3 3 Yes Oligotropha carboxidovorans OM5 3 3 Yes Oligotropha carboxidovorans OM5 3 3 Yes Rhodopseudomonas palustris DX-1 10 7 Yes Rhodopseudomonas palustris TIE-1 11 8 Yes Rhodopseudomonas palustris HaA2 9 7 Yes Rhodopseudomonas palustris BisB5 6 4 Yes Rhodopseudomonas palustris BisB18 17 14 Yes Rhodopseudomonas palustris CGA009 11 8 Yes Bradyrhizobium sp. S23321 14 12 Yes Bradyrhizobium sp. BTAi1 13 12 Yes Bradyrhizobium oligotrophicum S58 11 9 Yes Bradyrhizobium japonicum USDA 6 10 9 Yes Simiduia agarivorans SA1 = DSM 21679 8 4 Yes Aeromonas hydrophila ML09-119 6 5 Yes Vibrio fischeri ES114 8 8 Yes Vibrio sp. EJY3 7 7 Yes Vibrio parahaemolyticus BB22OP 12 12 Yes Vibrio alginolyticus NBRC 15630 = ATCC 17749 12 12 Yes Vibrio anguillarum Listonella anguillarum M3 7 7 Yes Vibrio nigripulchritudo VibrioScope 10 10 Yes Vibrio vulnificus CMCP6 8 8 Yes Vibrio vulnificus YJ016 8 8 Yes Vibrio cholerae LMA3984-4 5 5 Yes Vibrio cholerae M66-2 7 7 Yes Vibrio cholerae O395 7 7 Yes Vibrio cholerae IEC224 7 7 Yes Vibrio cholerae O1 str. 2010EL-1786 7 7 Yes Vibrio cholerae MJ-1236 7 7 Yes Vibrio cholerae O1 biovar El Tor str. N16961 7 7 Yes Idiomarina loihiensis GSL 199 4 3 Yes Shewanella sp. W3-18-1 9 8 Yes Shewanella sp. ANA-3 5 4 Yes Shewanella baltica BA175 11 10 Yes Shewanella baltica OS678 7 6 Yes Shewanella baltica OS117 11 10 Yes Shewanella baltica OS223 5 4 Yes Shewanella baltica OS195 7 6 Yes Shewanella baltica OS155 11 10 Yes Shewanella sp. MR-7 5 4 Yes Shewanella putrefaciens 200 5 4 Yes Glaciecola psychrophila 170 8 8 Yes Alteromonas macleodii str. 'Ionian Sea UM4b' 7 7 Yes Alteromonas macleodii str. 'Ionian Sea UM7' 9 9 Yes Alteromonas macleodii str. 'Ionian Sea U8' 9 8 Yes Alteromonas macleodii str. 'Ionian Sea U7' 9 8 Yes Alteromonas macleodii str. 'Ionian Sea U4' 9 8 Yes Alteromonas macleodii str. 'Aegean Sea MED64' 9 8 Yes Alteromonas macleodii str. 'English Channel 615' 9 8 Yes Alteromonas macleodii AltDE1 9 9 Yes Alteromonas macleodii str. 'English Channel 673' 7 6 Yes Alteromonas macleodii str. 'Balearic Sea AD45' 8 7 Yes Alteromonas macleodii str. 'Black Sea 11' 8 7 Yes Alteromonas macleodii ATCC 27126 7 6 Yes Alcanivorax dieselolei B5 3 3 Yes Thalassolituus oleivorans MIL-1 5 3 Yes Stenotrophomonas maltophilia D457 6 5 Yes Stenotrophomonas maltophilia JV3 6 5 Yes Stenotrophomonas maltophilia R551-3 6 5 Yes Xanthomonas citri subsp. citri Aw12879 4 3 Yes Xanthomonas campestris pv. vesicatoria str. 85-10 4 3 Yes Xanthomonas axonopodis pv. citrumelo F1 4 3 Yes Xanthomonas axonopodis Xac29-1 4 3 Yes Xanthomonas oryzae pv. oryzicola BLS256 4 3 Yes Xanthomonas oryzae pv. oryzae MAFF 311018 4 3 Yes Xanthomonas oryzae pv. oryzae KACC 10331 4 3 Yes Xanthomonas campestris pv. raphani 756C 4 3 Yes Xanthomonas campestris pv. campestris str. 8004 4 3 Yes Xanthomonas campestris pv. campestris str. ATCC 33913 4 3 Yes Thioflavicoccus mobilis 8321 4 3 Yes Legionella pneumophila str. Paris 3 3 Yes Legionella pneumophila str. Lens 4 3 Yes Legionella pneumophila subsp. pneumophila LPE509 4 3 Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay 4 3 Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1 4 3 Yes Legionella pneumophila subsp. pneumophila 4 3 Yes Legionella pneumophila subsp. pneumophila 4 3 Yes Legionella pneumophila subsp. pneumophila ATCC 43290 4 3 Yes Legionella pneumophila 2300/99 Alcoy 4 3 Yes Proteus mirabilis BB2000 4 4 Yes Morganella morganii subsp. morganii KT 4 4 Yes Edwardsiella tarda C07-087 4 4 Yes Edwardsiella tarda FL6-60 4 4 Yes Rahnella aquatilis HX2 3 3 Yes Yersinia pseudotuberculosis PB1/+ 7 7 Yes Yersinia pseudotuberculosis YPIII 5 5 Yes Yersinia pseudotuberculosis IP 32953 6 6 Yes Yersinia pestis biovar Microtus str. 91001 4 4 Yes Yersinia pestis A1122 8 8 Yes Yersinia pestis Z176003 8 8 Yes Yersinia pestis D182038 8 8 Yes Yersinia pestis D106004 8 8 Yes Yersinia pestis biovar Medievalis str. Harbin 35 6 6 Yes Yersinia pestis Nepal516 6 6 Yes Yersinia pestis Antiqua 8 8 Yes Yersinia pestis Angola 10 10 Yes Yersinia pestis CO92 8 8 Yes Yersinia pestis KIM10+ 6 6 Yes Yersinia enterocolitica subsp. palearctica 105.5R(r) 8 8 Yes Yersinia enterocolitica subsp. palearctica Y11 8 8 Yes Serratia sp. AS13 3 3 Yes Serratia plymuthica S13 3 3 Yes Serratia plymuthica 4Rx13 3 3 Yes Serratia marcescens FGI94 3 3 Yes Serratia marcescens WW4 3 3 Yes Serratia liquefaciens ATCC 27592 3 3 Yes Dickeya dadantii Ech586 4 3 Yes Dickeya dadantii 3937 4 3 Yes Pectobacterium carotovorum subsp. carotovorum PCC21 3 3 Yes Pantoea ananatis LMG 5342 8 8 Yes Pantoea ananatis PA13 9 9 Yes Pantoea ananatis AJ13355 9 9 Yes Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony) 3 3 Yes Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) 1 1 Yes Buchnera aphidicola str. Ua (Uroleucon ambrosiae) 1 1 Yes Buchnera aphidicola str. LL01 (Acyrthosiphon pisum) 1 1 Yes Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum) 1 1 Yes Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) 1 1 Yes Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum) 1 1 Yes Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 1 1 Yes Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1 1 Yes Buchnera aphidicola str. Sg (Schizaphis graminum) 2 2 Yes Erwinia pyrifoliae DSM 12163 6 6 Yes Erwinia amylovora CFBP1430 6 6 Yes Cronobacter sakazakii CMCC 45402 4 4 Yes Cronobacter sakazakii SP291 4 4 Yes Cronobacter sakazakii ATCC BAA-894 4 4 Yes Shigella sonnei 53G 3 3 Yes Shigella flexneri 2002017 1 1 Yes Shigella flexneri 2a str. 2457T 1 1 Yes Shigella flexneri 2a str. 301 1 1 Yes Shigella dysenteriae 1617 5 5 Yes Shigella boydii Sb227 3 3 Yes Salmonella bongori N268-08 3 3 Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980 3 3 Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736 3 3 Yes Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 4 4 Yes Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 4 4 Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050 3 3 Yes Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 3 3 Yes Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 3 3 Yes Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1 4 4 Yes Salmonella enterica subsp. enterica serovar Newport str. SL254 4 4 Yes Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3 3 Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921 4 4 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288 4 4 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798 4 4 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 4 4 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 4 4 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 5 5 Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2 4 4 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 4 4 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 4 4 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4 4 Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4 4 Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104 4 4 Yes Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 3 3 Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty21a 3 3 Yes Salmonella enterica subsp. enterica serovar Typhi str. CT18 3 3 Yes Salmonella enterica subsp. enterica serovar Typhi str. Ty2 3 3 Yes Salmonella enterica serovar Bovismorbificans genomics 2 2 Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 4 4 Yes Salmonella enterica subsp. enterica serovar Agona str. 24249 3 3 Yes Salmonella enterica subsp. enterica serovar Agona str. SL483 3 3 Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1 4 4 Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 4 4 Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 4 4 Yes Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 4 4 Yes Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069 4 4 Yes Salmonella enterica subsp. enterica serovar Heidelberg str. B182 3 3 Yes Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 4 4 Yes Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 4 4 Yes Salmonella enterica subsp. enterica serovar Pullorum str. S06004 2 2 Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67 2 2 Yes Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078 2 2 Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836 4 4 Yes Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 2 2 Yes Enterobacter aerogenes EA1509E 3 3 Yes Escherichia coli E24377A 3 3 Yes Escherichia coli E. coli PMV-1 4 3 Yes Escherichia coli JJ1886 6 6 Yes Escherichia coli LY180 7 6 Yes Escherichia coli APEC O78 3 3 Yes Escherichia coli O7:K1 str. CE10 4 3 Yes Escherichia coli O104:H4 str. 2009EL-2050 3 3 Yes Escherichia coli O104:H4 str. 2009EL-2071 3 3 Yes Escherichia coli O104:H4 str. 2011C-3493 3 3 Yes Escherichia coli NA114 6 6 Yes Escherichia coli P12b 7 7 Yes Escherichia coli str. 'clone D i2' 3 3 Yes Escherichia coli str. 'clone D i14' 3 3 Yes Escherichia coli UM146 4 3 Yes Escherichia coli 042 6 6 Yes Escherichia coli Xuzhou21 4 3 Yes Escherichia coli IHE3034 4 3 Yes Escherichia coli UMNK88 3 3 Yes Escherichia coli O83:H1 str. NRG 857C 3 3 Yes Escherichia coli ABU 83972 3 3 Yes Escherichia coli KO11FL 7 6 Yes Escherichia coli KO11FL 7 6 Yes Escherichia coli LF82 3 3 Yes Escherichia coli ED1a 3 3 Yes Escherichia coli IAI39 4 3 Yes Escherichia coli UMN026 6 6 Yes Escherichia coli 55989 3 3 Yes Escherichia coli S88 4 3 Yes Escherichia coli IAI1 4 3 Yes Escherichia coli W 7 6 Yes Escherichia coli W 7 6 Yes Escherichia coli DH1 3 3 Yes Escherichia coli DH1 3 3 Yes Escherichia coli ATCC 8739 6 6 Yes Escherichia coli BL21(DE3) 2 2 Yes Escherichia coli BL21(DE3) 2 2 Yes Escherichia coli SMS-3-5 6 6 Yes Escherichia coli SE15 3 3 Yes Escherichia coli SE11 3 3 Yes Escherichia coli APEC O1 4 3 Yes Escherichia coli O103:H2 str. 12009 3 3 Yes Escherichia coli UTI89 4 3 Yes Escherichia coli 536 3 3 Yes Escherichia coli HS 3 3 Yes Escherichia coli ETEC H10407 3 3 Yes Escherichia coli O55:H7 str. RM12579 4 3 Yes Escherichia coli O55:H7 str. CB9615 4 3 Yes Escherichia coli O26:H11 str. 11368 6 6 Yes Escherichia coli CFT073 3 3 Yes Escherichia coli O111:H- str. 11128 5 5 Yes Escherichia coli O127:H6 str. E2348/69 3 3 Yes Escherichia coli O157:H7 str. TW14359 4 3 Yes Escherichia coli O157:H7 str. EC4115 4 3 Yes Escherichia coli O157:H7 str. Sakai 4 3 Yes Escherichia coli O157:H7 str. EDL933 4 3 Yes Escherichia coli BW2952 3 3 Yes Escherichia coli str. K-12 substr. MG1655 3 3 Yes Escherichia coli str. K-12 substr. W3110 3 3 Yes Escherichia coli str. K-12 substr. DH10B 2 2 Yes Escherichia coli B str. REL606 2 2 Yes Enterobacter cloacae SCF1 3 3 Yes Enterobacter cloacae EcWSU1 3 3 Yes Enterobacter cloacae subsp. cloacae ENHKU01 3 3 Yes Enterobacter cloacae subsp. cloacae NCTC 9394 4 4 Yes Enterobacter cloacae subsp. cloacae ATCC 13047 6 6 Yes Azotobacter vinelandii CA6 3 3 Yes Azotobacter vinelandii CA 3 3 Yes Pseudomonas denitrificans ATCC 13867 4 3 Yes Pseudomonas syringae pv. phaseolicola 1448A 4 3 Yes Pseudomonas syringae pv. syringae B728a 4 3 Yes Pseudomonas stutzeri CCUG 29243 4 3 Yes Pseudomonas stutzeri DSM 10701 6 6 Yes Pseudomonas stutzeri DSM 4166 7 6 Yes Pseudomonas stutzeri RCH2 6 6 Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199 3 3 Yes Pseudomonas monteilii SB3101 5 3 Yes Pseudomonas monteilii SB3078 5 3 Yes Pseudomonas putida H8234 4 3 Yes Pseudomonas putida HB3267 4 3 Yes Pseudomonas putida NBRC 14164 4 3 Yes Pseudomonas putida DOT-T1E 4 3 Yes Pseudomonas putida S16 4 3 Yes Pseudomonas putida BIRD-1 4 3 Yes Pseudomonas putida W619 4 3 Yes Pseudomonas putida ND6 4 3 Yes Pseudomonas putida KT2440 5 3 Yes Pseudomonas putida GB-1 4 3 Yes Pseudomonas protegens CHA0 4 3 Yes Pseudomonas poae RE*1-1-14 4 3 Yes Pseudomonas fluorescens F113 7 6 Yes Pseudomonas fluorescens A506 4 3 Yes Pseudomonas fluorescens R124 4 3 Yes Pseudomonas fluorescens Pf0-1 4 3 Yes Pseudomonas resinovorans NBRC 106553 8 8 Yes Pseudomonas mendocina NK-01 7 6 Yes Pseudomonas aeruginosa SCV20265 4 3 Yes Pseudomonas aeruginosa MTB-1 4 3 Yes Pseudomonas aeruginosa LES431 4 3 Yes Pseudomonas aeruginosa RP73 4 3 Yes Pseudomonas aeruginosa B136-33 4 3 Yes Pseudomonas aeruginosa PA1R 4 3 Yes Pseudomonas aeruginosa PA1 4 3 Yes Pseudomonas aeruginosa DK2 4 3 Yes Pseudomonas aeruginosa NCGM2.S1 3 2 Yes Pseudomonas aeruginosa M18 4 3 Yes Pseudomonas aeruginosa LESB58 4 3 Yes Pseudomonas aeruginosa PA7 4 3 Yes Pseudomonas aeruginosa PAO1 4 3 Yes Methylophaga sp. JAM7 5 4 Yes Cycloclasticus zancles 7-ME 5 3 Yes Ricinus communis Castor bean 7 7 Yes Nicotiana benthamiana 0.4.4 (Early draft) 1 1 Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC) 12 12 Yes Oreochromis niloticus 69_1.0 Nile tilapia 1 1 Yes 1_050719N (meta-genome) 26 26 Yes 1_Upper_euphotic (meta-genome) 7 7 Yes 2_050719S (meta-genome) 12 12 Yes 2_Base_of_chrolophyll_max (meta-genome) 5 5 Yes 3_050719R (meta-genome) 34 34 Yes 3_Below_base_of_euphotic (meta-genome) 6 6 Yes 4_050719Q (meta-genome) 41 41 Yes 4_Deep_abyss (meta-genome) 10 10 Yes 5_050719P (meta-genome) 54 54 Yes 5_Below_upper_mesopelagic (meta-genome) 7 7 Yes 6_Upper_euphotic (meta-genome) 12 12 Yes 7_Oxygen_minimum_layer (meta-genome) 10 10 Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome) 9 9 Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome) 2 2 Yes Air microbial communities Singapore indoor air filters 1 (meta-genome) 39 39 Yes Air microbial communities Singapore indoor air filters 2 (meta-genome) 40 39 Yes Atta cephalotes fungus garden (ACEF) (meta-genome) 75 74 Yes Bath Hot Springs, filamentous community (meta-genome) 6 6 Yes Bath Hot Springs, planktonic community (meta-genome) 12 12 Yes Combined (meta-genome) 166 165 Yes Cyphomyrmex longiscapus fungus garden (meta-genome) 195 193 Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome) 44 44 Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome) 37 36 Yes Dump bottom (Dump bottom) (meta-genome) 211 211 Yes Dump top (Dump top) (meta-genome) 198 198 Yes Endophytic microbiome from Rice (meta-genome) 54 53 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome) 52 52 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome) 25 25 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome) 18 17 Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome) 35 33 Yes Fungus garden combined (combined) (meta-genome) 79 78 Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome) 223 223 Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome) 263 263 Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes 13 13 Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome) 3 3 Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome) 9 9 Yes Guerrero Negro salt ponds hypersaline mat 03(I) (meta-genome) 7 7 Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome) 6 6 Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome) 9 9 Yes Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome) 2 2 Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome) 6 6 Yes Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome) 8 8 Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome) 7 7 Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome) 3 3 Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica), fosmids (meta-genome) 2 2 Yes Hindgut microbiome of Nasutitermes sp. (Costa Rica) (meta-genome) 229 229 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome) 1 1 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP10 from Narrow Gauge (meta-genome) 1 1 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome) 12 12 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome) 30 30 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome) 8 8 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome) 22 21 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome) 44 44 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome) 26 26 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome) 30 30 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome) 20 20 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome) 2 2 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome) 40 40 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome) 2 2 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome) 25 25 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome) 5 5 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome) 25 25 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome) 15 13 Yes Human Gut Community Subject 7 (meta-genome) 2 2 Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome) 38 38 Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome) 10 10 Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome) 15 15 Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome) 8 8 Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) 135 132 Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome) 35 35 Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome) 10 10 Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) 26 26 Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome) 30 29 Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome) 39 37 Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome) 16 16 Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome) 7 7 Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome) 25 23 Yes Mouse Gut Community lean1 (meta-genome) 4 4 Yes Mouse Gut Community lean2 (meta-genome) 5 5 Yes Mouse Gut Community lean3 (meta-genome) 6 6 Yes Mouse Gut Community ob1 (meta-genome) 15 15 Yes Mouse Gut Community ob2 (meta-genome) 5 5 Yes NCBI 2017_08 genome 193615 179964 Yes Nymph Lake Bulk Water (meta-genome) 1 1 Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) 65 64 Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome) 3 3 Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome) 4 3 Yes simHC - Simulated High Complexity Metagenome (meta-genome) 114 114 Yes simLC - Simulated Low Complexity Metagenome (meta-genome) 76 74 Yes simMC - Simulated Medium Complexity Metagenome (meta-genome) 116 113 Yes Sludge/Australian, Phrap Assembly (meta-genome) 18 16 Yes Sludge/US, Jazz Assembly (meta-genome) 9 8 Yes Sludge/US, Phrap Assembly (meta-genome) 19 17 Yes Soil microbial communities from Minnesota Farm (meta-genome) 33 32 Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) 141 141 Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) 183 183 Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome) 114 114 Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome) 104 104 Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) 55 55 Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome) 71 71 Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome) 34 34 Yes STRING v9.0.5 (STRING) 2460 2274 Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome) 8 8 Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) 77 77 Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome) 18 18 Yes Termite Protist Endosymbiont Community (meta-genome) 12 12 Yes Uniprot 2018_03 genome 53281 49585 Yes Uranium Contaminated Groundwater FW106 (meta-genome) 9 8 Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome) 51 51 Yes Global Ocean Sampling Expedition (GOS) 4409 4393 Yes NCBI plasmid sequences (Plasmids) 108 95 Yes NCBI viral sequences (Viral) 3 3 Yes PDB chains (SCOP 1.75 ) (PDB) 2 2 Yes Protein Data Bank (all PDB sequenc) 429 427 Yes SCOP2 SCOPe CATH ECOD (all domain sequ) 46 46 Yes TargetDB 82 78 Yes The Salmonella enterica Pan-genome (meta-genome) 112 112
