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  Home > Genomes > Nuclear receptor coactivator interlocking domain domains in all eukaryotic genomes


Nuclear receptor coactivator interlocking domain superfamily domain assignments
in
all eukaryotic genomes

Assignment details

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25 selected genomes have 155 significant domains in 155 proteins.

Showing genomes 1 to 25 of 160
  1 2 3 4 5 6 7   Next Last

Homo sapiens 76_38 has 14 significant domains in 14 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSP00000262367   2.71e-26   2059-2115   Nuclear receptor coactivator interlocking domain  
ENSP00000263253   6.28e-25   2043-2098   Nuclear receptor coactivator interlocking domain  
ENSP00000288599   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSP00000320940   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSP00000361065   2.16e-17   1037-1085   Nuclear receptor coactivator interlocking domain  
ENSP00000361066   2.16e-17   1042-1090   Nuclear receptor coactivator interlocking domain  
ENSP00000361073   2.16e-17   1042-1090   Nuclear receptor coactivator interlocking domain  
ENSP00000371502   2.67e-26   2021-2077   Nuclear receptor coactivator interlocking domain  
ENSP00000379197   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSP00000385097   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSP00000385195   0.00000000000000196   769-815   Nuclear receptor coactivator interlocking domain  
ENSP00000385216   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSP00000399968   0.00000000000000353   1069-1114   Nuclear receptor coactivator interlocking domain  
ENSP00000429132   0.00000000000000114   195-240   Nuclear receptor coactivator interlocking domain  

Pan troglodytes 76_2.1.4 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000013169   2.75e-26   2089-2145   Nuclear receptor coactivator interlocking domain  
ENSPTRP00000020127   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSPTRP00000023375   2.16e-17   1045-1093   Nuclear receptor coactivator interlocking domain  
ENSPTRP00000024841   6.28e-25   2043-2098   Nuclear receptor coactivator interlocking domain  
ENSPTRP00000034801   0.00000000000000353   1069-1114   Nuclear receptor coactivator interlocking domain  

Gorilla gorilla 76_3.1 has 9 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGGOP00000005177   0.00000000000000353   1069-1114   Nuclear receptor coactivator interlocking domain  
ENSGGOP00000005899   2.71e-26   2059-2115   Nuclear receptor coactivator interlocking domain  
ENSGGOP00000008032   6.28e-25   2043-2098   Nuclear receptor coactivator interlocking domain  
ENSGGOP00000011007   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSGGOP00000019561   2.16e-17   1045-1093   Nuclear receptor coactivator interlocking domain  
ENSGGOP00000019674   0.00000000000000235   921-967   Nuclear receptor coactivator interlocking domain  
ENSGGOP00000022368   2.16e-17   1048-1096   Nuclear receptor coactivator interlocking domain  
ENSGGOP00000023600   2.71e-26   2067-2123   Nuclear receptor coactivator interlocking domain  
ENSGGOP00000023853   0.00000000000000353   1069-1114   Nuclear receptor coactivator interlocking domain  
 
Weak hits:
ENSGGOP00000026398   0.0667   9-50   Nuclear receptor coactivator interlocking domain  

Pongo abelii 76_2 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPPYP00000007974   2.59e-26   1948-2004   Nuclear receptor coactivator interlocking domain  
ENSPPYP00000012407   2.16e-17   1045-1093   Nuclear receptor coactivator interlocking domain  
ENSPPYP00000013236   7.45e-25   2015-2070   Nuclear receptor coactivator interlocking domain  
ENSPPYP00000014068   0.00000000000000216   920-966   Nuclear receptor coactivator interlocking domain  
ENSPPYP00000024008   0.00000000000000353   1069-1114   Nuclear receptor coactivator interlocking domain  

Nomascus leucogenys 76_1.0 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSNLEP00000001151   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSNLEP00000008440   2.16e-17   1045-1093   Nuclear receptor coactivator interlocking domain  
ENSNLEP00000011912   2.71e-26   2059-2115   Nuclear receptor coactivator interlocking domain  
ENSNLEP00000013823   0.00000000000000353   1069-1114   Nuclear receptor coactivator interlocking domain  
ENSNLEP00000018748   5.49e-25   2043-2098   Nuclear receptor coactivator interlocking domain  

Papio anubis 76 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPANP00000001509   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSPANP00000006814   0.00000000000000353   1069-1114   Nuclear receptor coactivator interlocking domain  
ENSPANP00000011383   0.00000000000000353   1069-1114   Nuclear receptor coactivator interlocking domain  
ENSPANP00000013403   6.28e-25   2043-2098   Nuclear receptor coactivator interlocking domain  
ENSPANP00000013404   5.89e-25   2043-2098   Nuclear receptor coactivator interlocking domain  
ENSPANP00000013793   2.71e-26   2059-2115   Nuclear receptor coactivator interlocking domain  
ENSPANP00000013794   2.63e-26   2037-2093   Nuclear receptor coactivator interlocking domain  
ENSPANP00000015956   2.16e-17   1044-1092   Nuclear receptor coactivator interlocking domain  

Macaca mulatta 76_1 has 11 significant domains in 11 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMMUP00000001192   6.28e-25   2043-2098   Nuclear receptor coactivator interlocking domain  
ENSMMUP00000003058   2.71e-26   2059-2115   Nuclear receptor coactivator interlocking domain  
ENSMMUP00000003062   2.67e-26   2021-2077   Nuclear receptor coactivator interlocking domain  
ENSMMUP00000015772   1.96e-17   977-1025   Nuclear receptor coactivator interlocking domain  
ENSMMUP00000015773   2.16e-17   1047-1095   Nuclear receptor coactivator interlocking domain  
ENSMMUP00000015775   2.16e-17   1045-1093   Nuclear receptor coactivator interlocking domain  
ENSMMUP00000021016   0.00000000000000353   1069-1114   Nuclear receptor coactivator interlocking domain  
ENSMMUP00000027423   0.00000000000000235   921-967   Nuclear receptor coactivator interlocking domain  
ENSMMUP00000027425   0.00000000000000235   921-967   Nuclear receptor coactivator interlocking domain  
ENSMMUP00000032685   8.63e-27   540-596   Nuclear receptor coactivator interlocking domain  
ENSMMUP00000032686   2.75e-26   2074-2130   Nuclear receptor coactivator interlocking domain  

Callithrix jacchus 76_3.2.1 has 13 significant domains in 13 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCJAP00000008765   3.84e-25   997-1052   Nuclear receptor coactivator interlocking domain  
ENSCJAP00000008779   7.45e-25   2017-2072   Nuclear receptor coactivator interlocking domain  
ENSCJAP00000014700   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSCJAP00000014782   5.49e-16   156-202   Nuclear receptor coactivator interlocking domain  
ENSCJAP00000014783   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSCJAP00000014793   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSCJAP00000014855   0.00000000000000188   1068-1114   Nuclear receptor coactivator interlocking domain  
ENSCJAP00000030705   2.16e-17   1049-1097   Nuclear receptor coactivator interlocking domain  
ENSCJAP00000030711   2.16e-17   1044-1092   Nuclear receptor coactivator interlocking domain  
ENSCJAP00000036676   3.18e-25   1997-2050   Nuclear receptor coactivator interlocking domain  
ENSCJAP00000036680   2.31e-26   861-916   Nuclear receptor coactivator interlocking domain  
ENSCJAP00000036688   3.22e-25   2037-2090   Nuclear receptor coactivator interlocking domain  
ENSCJAP00000051086   0.00000000000000188   1068-1114   Nuclear receptor coactivator interlocking domain  

Otolemur garnettii 76_3 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOGAP00000000381   9.02e-25   2046-2101   Nuclear receptor coactivator interlocking domain  
ENSOGAP00000000674   0.00000000000000235   922-968   Nuclear receptor coactivator interlocking domain  
ENSOGAP00000002066   2.71e-26   2063-2119   Nuclear receptor coactivator interlocking domain  
ENSOGAP00000006440   2.16e-17   1048-1096   Nuclear receptor coactivator interlocking domain  
ENSOGAP00000011845   0.00000000000000216   629-674   Nuclear receptor coactivator interlocking domain  

Microcebus murinus 76_1 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMICP00000001429   0.00000000000000824   890-934   Nuclear receptor coactivator interlocking domain  
ENSMICP00000002239   0.00000000000000353   1068-1113   Nuclear receptor coactivator interlocking domain  
ENSMICP00000006203   5.69e-16   1041-1085   Nuclear receptor coactivator interlocking domain  
ENSMICP00000008341   1.06e-22   1989-2044   Nuclear receptor coactivator interlocking domain  
ENSMICP00000012659   7.45e-25   2013-2068   Nuclear receptor coactivator interlocking domain  

Rattus norvegicus 76_5.0 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSRNOP00000007079   2.71e-26   2060-2116   Nuclear receptor coactivator interlocking domain  
ENSRNOP00000007768   1.18e-17   1048-1096   Nuclear receptor coactivator interlocking domain  
ENSRNOP00000011026   0.00000000000000353   1069-1114   Nuclear receptor coactivator interlocking domain  
ENSRNOP00000040986   1.16e-17   1046-1094   Nuclear receptor coactivator interlocking domain  
ENSRNOP00000059144   1.18e-17   1055-1103   Nuclear receptor coactivator interlocking domain  
ENSRNOP00000061906   0.00000000000000235   861-907   Nuclear receptor coactivator interlocking domain  

Mus musculus 76_38 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000006037   0.00000000000000785   1069-1113   Nuclear receptor coactivator interlocking domain  
ENSMUSP00000023165   2.71e-26   2060-2116   Nuclear receptor coactivator interlocking domain  
ENSMUSP00000066789   1.77e-24   2044-2099   Nuclear receptor coactivator interlocking domain  
ENSMUSP00000069509   0.00000000000000746   1000-1044   Nuclear receptor coactivator interlocking domain  
ENSMUSP00000080413   0.00000000000000746   1000-1044   Nuclear receptor coactivator interlocking domain  
ENSMUSP00000082971   0.00000000000000235   926-972   Nuclear receptor coactivator interlocking domain  
ENSMUSP00000085416   3.14e-17   1053-1100   Nuclear receptor coactivator interlocking domain  
ENSMUSP00000104875   3.14e-17   1053-1100   Nuclear receptor coactivator interlocking domain  

Dipodomys ordii 76_1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSDORP00000002198   1.92e-17   1045-1093   Nuclear receptor coactivator interlocking domain  
ENSDORP00000010246   0.0000000000000019   1063-1109   Nuclear receptor coactivator interlocking domain  
ENSDORP00000013130   2.59e-26   1949-2005   Nuclear receptor coactivator interlocking domain  

Ictidomys tridecemlineatus 76_2 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSTOP00000000650   3.92e-25   1063-1118   Nuclear receptor coactivator interlocking domain  
ENSSTOP00000004511   1.22e-26   867-923   Nuclear receptor coactivator interlocking domain  
ENSSTOP00000013915   4.51e-16   1056-1099   Nuclear receptor coactivator interlocking domain  
ENSSTOP00000021326   9.81e-16   131-176   Nuclear receptor coactivator interlocking domain  
 
Weak hits:
ENSSTOP00000006347   0.051   434-457   Nuclear receptor coactivator interlocking domain  
ENSSTOP00000022413   0.051   437-460   Nuclear receptor coactivator interlocking domain  

Heterocephalus glaber v1.7-2 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
HGL_H00000263253   7.06e-25   2046-2101   Nuclear receptor coactivator interlocking domain  
HGL_H00000267974   0.00000000000000275   1068-1114   Nuclear receptor coactivator interlocking domain  
HGL_H00000320940   0.00000000000000235   921-967   Nuclear receptor coactivator interlocking domain  
HGL_H00000361066   1.92e-17   954-1002   Nuclear receptor coactivator interlocking domain  

Cavia porcellus 76_3 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCPOP00000000434   0.00000000000000353   1040-1085   Nuclear receptor coactivator interlocking domain  
ENSCPOP00000001011   0.00000000000000235   921-967   Nuclear receptor coactivator interlocking domain  
ENSCPOP00000004489   4.71e-25   2000-2053   Nuclear receptor coactivator interlocking domain  
ENSCPOP00000004894   7.06e-25   2009-2064   Nuclear receptor coactivator interlocking domain  
ENSCPOP00000007263   3.14e-17   1054-1102   Nuclear receptor coactivator interlocking domain  

Oryctolagus cuniculus 76_2 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOCUP00000003854   4.71e-26   2037-2092   Nuclear receptor coactivator interlocking domain  
ENSOCUP00000005169   0.00000000000000353   1069-1114   Nuclear receptor coactivator interlocking domain  
ENSOCUP00000005186   2.35e-17   1048-1096   Nuclear receptor coactivator interlocking domain  
ENSOCUP00000009840   1.18e-24   2044-2099   Nuclear receptor coactivator interlocking domain  
ENSOCUP00000013252   0.00000000000000235   919-965   Nuclear receptor coactivator interlocking domain  
ENSOCUP00000026554   0.00000000000000235   919-965   Nuclear receptor coactivator interlocking domain  

Ochotona princeps 76 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOPRP00000005776   2.63e-26   1993-2049   Nuclear receptor coactivator interlocking domain  
ENSOPRP00000007854   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSOPRP00000013751   0.00000000000000353   1067-1112   Nuclear receptor coactivator interlocking domain  
ENSOPRP00000015559   2.35e-17   1037-1085   Nuclear receptor coactivator interlocking domain  

Tupaia belangeri 76 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTBEP00000002681   7.45e-25   2035-2090   Nuclear receptor coactivator interlocking domain  
ENSTBEP00000006594   0.0000000000000981   1063-1104   Nuclear receptor coactivator interlocking domain  
ENSTBEP00000012190   2.94e-17   1044-1092   Nuclear receptor coactivator interlocking domain  

Sus scrofa 76_10.2 has 9 significant domains in 9 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSSCP00000000074   7.06e-25   1987-2042   Nuclear receptor coactivator interlocking domain  
ENSSSCP00000006604   0.00000000000000334   982-1027   Nuclear receptor coactivator interlocking domain  
ENSSSCP00000006605   0.00000000000000314   913-958   Nuclear receptor coactivator interlocking domain  
ENSSSCP00000007946   1.96e-17   1029-1077   Nuclear receptor coactivator interlocking domain  
ENSSSCP00000008490   9.02e-26   2066-2121   Nuclear receptor coactivator interlocking domain  
ENSSSCP00000009150   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSSSCP00000009151   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSSSCP00000020812   7.45e-25   2048-2103   Nuclear receptor coactivator interlocking domain  
ENSSSCP00000025750   0.00000000000000353   1051-1096   Nuclear receptor coactivator interlocking domain  

Bos taurus 76_3.1 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSBTAP00000005092   9.02e-26   2062-2117   Nuclear receptor coactivator interlocking domain  
ENSBTAP00000009850   2.16e-17   1050-1098   Nuclear receptor coactivator interlocking domain  
ENSBTAP00000019983   0.00000000000000196   920-966   Nuclear receptor coactivator interlocking domain  
ENSBTAP00000021556   7.45e-25   2045-2100   Nuclear receptor coactivator interlocking domain  
ENSBTAP00000027071   0.00000000000000255   1069-1114   Nuclear receptor coactivator interlocking domain  
ENSBTAP00000055281   7.06e-16   1060-1106   Nuclear receptor coactivator interlocking domain  

Ovis aries 76_3.1 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOARP00000002661   8.63e-26   1993-2048   Nuclear receptor coactivator interlocking domain  
ENSOARP00000004037   0.00000000000000804   1069-1114   Nuclear receptor coactivator interlocking domain  
ENSOARP00000010530   2.16e-17   1051-1099   Nuclear receptor coactivator interlocking domain  
ENSOARP00000019268   3.84e-25   2050-2105   Nuclear receptor coactivator interlocking domain  
ENSOARP00000019367   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSOARP00000019369   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  

Vicugna pacos 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSVPAP00000005162   0.00000000000000235   914-960   Nuclear receptor coactivator interlocking domain  
 
Weak hits:
ENSVPAP00000009998   0.000186   1064-1090   Nuclear receptor coactivator interlocking domain  

Tursiops truncatus 76_1 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTTRP00000000019   4.12e-17   1043-1090   Nuclear receptor coactivator interlocking domain  
ENSTTRP00000003136   0.00000000000000785   2045-2083   Nuclear receptor coactivator interlocking domain  
ENSTTRP00000012347   0.00000000000000353   1068-1113   Nuclear receptor coactivator interlocking domain  
ENSTTRP00000014337   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSTTRP00000016110   9.02e-26   2021-2076   Nuclear receptor coactivator interlocking domain  

Mustela putorius furo 76_1.0 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMPUP00000010544   0.00000000000000294   831-876   Nuclear receptor coactivator interlocking domain  
ENSMPUP00000013907   0.00000000000000235   920-966   Nuclear receptor coactivator interlocking domain  
ENSMPUP00000014925   9.02e-26   2062-2117   Nuclear receptor coactivator interlocking domain  
ENSMPUP00000016323   1.22e-24   2047-2102   Nuclear receptor coactivator interlocking domain  
ENSMPUP00000017480   4.32e-17   1049-1096   Nuclear receptor coactivator interlocking domain  

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Select to display   Genome       Domains   Proteins
No Yes ALL   6955 6955
No Yes Homo sapiens 76_38 Human 14 14
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 5 5
No Yes Gorilla gorilla 76_3.1 Western gorilla 9 9
No Yes Pongo abelii 76_2 Sumatran orangutan 5 5
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 5 5
No Yes Papio anubis 76 Olive baboon 8 8
No Yes Macaca mulatta 76_1 Rhesus monkey 11 11
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 13 13
No Yes Otolemur garnettii 76_3 Small-eared galago 5 5
No Yes Microcebus murinus 76_1 Gray mouse lemur 5 5
No Yes Rattus norvegicus 76_5.0 Norway rat 6 6
No Yes Mus musculus 76_38 House mouse 8 8
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 3 3
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 4 4
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 4 4
No Yes Cavia porcellus 76_3 Domestic guinea pig 5 5
No Yes Oryctolagus cuniculus 76_2 Rabbit 6 6
No Yes Ochotona princeps 76 American pika 4 4
No Yes Tupaia belangeri 76 Northern tree shrew 3 3
No Yes Sus scrofa 76_10.2 Pig 9 9
No Yes Bos taurus 76_3.1 Cattle 6 6
No Yes Ovis aries 76_3.1 Sheep 6 6
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 5 5
No Yes Mustela putorius furo 76_1.0 Domestic ferret 5 5
No Yes Ailuropoda melanoleuca 76_1 Giant panda 6 6
No Yes Canis familiaris 76_3.1 Dog 8 8
No Yes Felis catus 76_6.2 Domestic cat 4 4
No Yes Equus caballus 76_2 Horse 6 6
No Yes Myotis lucifugus 76_2.0 Little brown bat 7 7
No Yes Pteropus vampyrus 76_1 Large flying fox 5 5
No Yes Sorex araneus 76_1 European shrew 4 4
No Yes Erinaceus europaeus 76 Western European hedgehog 4 4
No Yes Procavia capensis 76_1 Cape rock hyrax 3 3
No Yes Loxodonta africana 76_3 African savanna elephant 7 7
No Yes Echinops telfairi 76 Small Madagascar hedgehog 5 5
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 6 6
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 3 3
No Yes Macropus eugenii 76_1.0 Tammar wallaby 4 4
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 7 7
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 4 4
No Yes Ornithorhynchus anatinus 76_5 Platypus 6 6
No Yes Saccoglossus kowalevskii v3.0   2 2
No Yes Petromyzon marinus 76_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 76_2 Turkey 6 6
No Yes Gallus gallus 76_4 Chicken 5 5
No Yes Anas platyrhynchos 76_1.0 Mallard 4 4
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 4 4
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 5 5
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 5 5
No Yes Anolis carolinensis 76_2.0 Green anole 5 5
No Yes Xenopus laevis African clawed frog 10 10
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 5 5
No Yes Latimeria chalumnae 76_1 Coelacanth 7 7
No Yes Lepisosteus oculatus 76 Spotted gar 8 8
No Yes Gadus morhua 76_1 Atlantic cod 4 4
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 10 10
No Yes Takifugu rubripes 76_4 Torafugu 40 40
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 8 8
No Yes Oryzias latipes 76_1 Japanese medaka 7 7
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 9 9
No Yes Poecilia formosa 76 Amazon molly 8 8
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 13 13
No Yes Astyanax mexicanus 76 Mexican tetra 6 6
No Yes Danio rerio 76_9 Zebrafish 13 13
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 3 3
No Yes Octopus bimaculoides 280   2 2
No Yes Crassostrea gigas 22 Pacific oyster 1 1
No Yes Capitella sp. I   1 1
No Yes Danaus plexippus OGS1.0 Monarch butterfly 2 2
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Nasonia vitripennis Jewel wasp 1 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 1 1
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 1 1
No Yes Linepithema humile v1.1 Argentine ant 1 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 1 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   1 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila yakuba 1.3   1 1
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   1 1
No Yes Drosophila erecta 1.3   1 1
No Yes Drosophila ananassae 1.3   1 1
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Megaselia scalaris 22   1 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 1 1
No Yes Anopheles darlingi 22 American malaria mosquito 1 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 1 1
No Yes Tribolium castaneum 3.0 Red flour beetle 1 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 1 1
No Yes Acyrthosiphon pisum Pea aphid 1 1
No Yes Daphnia pulex Common water flea 3 3
No Yes Tetranychus urticae Two-spotted spider mite 2 2
No Yes Acropora digitifera v1.0   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 8 8
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 1 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 17 17
No Yes Homo sapiens (NCBI version) Human 11 11
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 5 5
No Yes Homo sapiens 69_37 Human 5 5
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 5 5
No Yes Gorilla gorilla 69_3.1 Western gorilla 6 6
No Yes Pongo abelii 69_2 Sumatran orangutan 5 5
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 6 6
No Yes Macaca mulatta 69_1 Rhesus monkey 5 5
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 6 6
No Yes Otolemur garnettii 69_3 Small-eared galago 5 5
No Yes Microcebus murinus 69_1 Gray mouse lemur 5 5
No Yes Rattus norvegicus 69_3.4 Norway rat 6 6
No Yes Mus musculus 69_38 House mouse 5 5
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 3 3
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 4 4
No Yes Cavia porcellus 69_3 Domestic guinea pig 5 5
No Yes Oryctolagus cuniculus 69_2 Rabbit 5 5
No Yes Ochotona princeps 69 American pika 4 4
No Yes Tupaia belangeri 69 Northern tree shrew 3 3
No Yes Sus scrofa 69_10.2 Pig 6 6
No Yes Bos taurus 69_3.1 Cattle 5 5
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 5 5
No Yes Mustela putorius furo 69_1.0 Domestic ferret 5 5
No Yes Ailuropoda melanoleuca 69_1 Giant panda 5 5
No Yes Canis familiaris 69_3.1 Dog 6 6
No Yes Felis catus 69 Domestic cat 3 3
No Yes Equus caballus 69_2 Horse 5 5
No Yes Myotis lucifugus 69_2.0 Little brown bat 7 7
No Yes Pteropus vampyrus 69_1 Large flying fox 5 5
No Yes Sorex araneus 69_1 European shrew 4 4
No Yes Erinaceus europaeus 69 Western European hedgehog 4 4
No Yes Procavia capensis 69_1 Cape rock hyrax 3 3
No Yes Loxodonta africana 69_3 African savanna elephant 5 5
No Yes Echinops telfairi 69 Small Madagascar hedgehog 5 5
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 4 4
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 3 3
No Yes Macropus eugenii 69_1.0 Tammar wallaby 4 4
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 5 5
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 4 4
No Yes Ornithorhynchus anatinus 69_5 Platypus 6 6
No Yes Petromyzon marinus 69_7.0 Sea lamprey 3 3
No Yes Meleagris gallopavo 69_2 Turkey 5 5
No Yes Gallus gallus 69_2 Chicken 5 5
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 4 4
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 4 4
No Yes Anolis carolinensis 69_2.0 Green anole 5 5
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 5 5
No Yes Latimeria chalumnae 69_1 Coelacanth 4 4
No Yes Gadus morhua 69_1 Atlantic cod 4 4
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 9 9
No Yes Takifugu rubripes 69_4 Torafugu 9 9
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 8 8
No Yes Oryzias latipes 69_1 Japanese medaka 7 7
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 9 9
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 9 9
No Yes Danio rerio 69_9 Zebrafish 8 8
No Yes NCBI 2017_08 genome   4131 4128
No Yes STRING v9.0.5 (STRING)   144 144
No Yes Uniprot 2018_03 genome   1438 1433
No Yes PDB chains (SCOP 1.75) (PDB)   5 5
No Yes Protein Data Bank (all PDB sequenc)   13 13
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   29 29
No Yes TargetDB (Targets)   9 9

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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