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beta-lactamase inhibitor protein-II, BLIP-II family domain assignments
in
all bacterial genomes

Assignment details

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14 selected genomes have 16 significant domains in 15 proteins.


Nakamurella multipartita DSM 44233 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|258654586|ref|YP_003203742.1|   1.28e-55   0.000021   44-290   1jtd B:  

Streptomyces sp. PAMC26508 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|479319622|ref|YP_007859673.1|   3.4e-59   0.000000000992   43-285   1jtd B:  

Streptomyces flavogriseus ATCC 33331 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|357413210|ref|YP_004924946.1|   1.24e-59   0.000000000992   43-285   1jtd B:  

Amycolatopsis mediterranei U32 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|300783692|ref|YP_003763983.1|   3.49e-40   0.00000996   24-268   1jtd B:  
 
Weak hits:
gi|300789124|ref|YP_003769415.1|   6.02e-79   0.077   2-341   1jtd B:  

Deinococcus maricopensis DSM 21211 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|320332949|ref|YP_004169660.1|   2.35e-57   0.0000382   379-633   1jtd B:  

Desulfotomaculum acetoxidans DSM 771 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|258516613|ref|YP_003192835.1|   1.7e-44   0.0000643   166-347   1jtd B:  
  7.19e-44   0.00065   354-450,531-665   1jtd B:  
  0.00000000811   0.0092   678-781   1jtd B:  

Geobacter bemidjiensis Bem has 2 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|308535275|ref|YP_002138732.2|   9.42e-50   0.00000942   391-618   1jtd B:  
  3.31e-49   0.0000184   98-348   1jtd B:  
 
Weak hits:
gi|197117227|ref|YP_002137654.1|   3.84e-46   0.022   30-292   1jtd B:  
  0.0000000000000602   0.031   277-441   1jtd B:  

Myxococcus xanthus DK 1622 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|108757116|ref|YP_634484.1|   3.84e-34   0.0001   262-507   1jtd B:  
 
Weak hits:
gi|108756969|ref|YP_633591.1|   2.01e-77   0.013   400-668   1jtd B:  
gi|108757230|ref|YP_634134.1|   0.00034   0.094   120-179   1jtd B:  
gi|108761023|ref|YP_629150.1|   2.7e-97   0.0043   417-757   1jtd B:  
  3.2e-89   0.025   52-357   1jtd B:  
  8.5e-85   0.012   750-1046   1jtd B:  
gi|108761787|ref|YP_630383.1|   1.57e-17   0.0024   820-966   1jtd B:  

Thiocystis violascens DSM 198 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|390951777|ref|YP_006415536.1|   1.22e-49   0.0000594   47-319   1jtd B:  

Saccharothrix espanaensis DSM 44229 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|433605195|ref|YP_007037564.1|   1.05e-54   0.00000228   32-248   1jtd B:  

Amycolatopsis mediterranei RB has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|532458438|ref|YP_008458090.1|   3.49e-40   0.00000996   24-268   1jtd B:  
 
Weak hits:
gi|532463863|ref|YP_008463515.1|   6.02e-79   0.077   2-341   1jtd B:  

Amycolatopsis mediterranei S699 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|399535576|ref|YP_006548238.1|   3.49e-40   0.00000996   24-268   1jtd B:  
 
Weak hits:
gi|399541002|ref|YP_006553664.1|   6.02e-79   0.077   2-341   1jtd B:  

Amycolatopsis mediterranei S699 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|399535576|ref|YP_006548238.1|   3.49e-40   0.00000996   24-268   1jtd B:  
 
Weak hits:
gi|399541002|ref|YP_006553664.1|   6.02e-79   0.077   2-341   1jtd B:  

Amycolatopsis orientalis HCCB10007 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|506933109|ref|YP_008013547.1|   2.35e-51   0.0000879   608-885   1jtd B:  
gi|506934652|ref|YP_008015090.1|   1.22e-42   0.00000403   15-296   1jtd B:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   482 482
No Yes Nakamurella multipartita DSM 44233   1 1
No Yes Streptomyces sp. PAMC26508   1 1
No Yes Streptomyces flavogriseus ATCC 33331   1 1
No Yes Amycolatopsis mediterranei U32   1 1
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Desulfotomaculum acetoxidans DSM 771   1 1
No Yes Geobacter bemidjiensis Bem   2 1
No Yes Myxococcus xanthus DK 1622   1 1
No Yes Thiocystis violascens DSM 198   1 1
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Amycolatopsis mediterranei RB   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis mediterranei S699   1 1
No Yes Amycolatopsis orientalis HCCB10007   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 09(Y) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   8 8
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   5 5
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes NCBI 2017_08 genome   195 178
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   3 3
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   4 4
No Yes STRING v9.0.5 (STRING)   4 4
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   192 169
No Yes Global Ocean Sampling Expedition (GOS)   7 7
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   8 8
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   24 24
No Yes TargetDB (Targets)   1 1

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