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  Home > Genomes > Cloacin translocation domain domains in all bacterial genomes


Cloacin translocation domain superfamily domain assignments
in
all bacterial genomes

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25 selected genomes have 39 significant domains in 39 proteins.

Showing genomes 1 to 25 of 111
  1 2 3 4 5   Next Last

Candidatus Saccharimonas aalborgensis has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|501436407|ref|YP_007985201.1|   0.0000191   10-124   Cloacin translocation domain  
 
Weak hits:
gi|501436410|ref|YP_007985204.1|   0.00128   19-130   Cloacin translocation domain  

Vibrio harveyi ATCC BAA-1116 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|156972866|ref|YP_001443773.1|   7.72e-32   551-753   Cloacin translocation domain  

Vibrio parahaemolyticus RIMD 2210633 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|28901118|ref|NP_800773.1|   1.57e-33   561-765   Cloacin translocation domain  

Vibrio anguillarum 775 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|336122665|ref|YP_004564713.1|   0.00000000759   548-703   Cloacin translocation domain  

Marinobacter aquaeolei VT8 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|120552976|ref|YP_957327.1|   0.00000000497   232-404   Cloacin translocation domain  

Photorhabdus asymbiotica has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|253988296|ref|YP_003039652.1|   1.57e-39   219-427   Cloacin translocation domain  
gi|253988695|ref|YP_003040051.1|   1.07e-38   219-426   Cloacin translocation domain  
gi|253989995|ref|YP_003041351.1|   4.58e-39   219-426   Cloacin translocation domain  
gi|253989999|ref|YP_003041355.1|   3.01e-39   208-416   Cloacin translocation domain  
gi|253990146|ref|YP_003041502.1|   5.23e-41   221-428   Cloacin translocation domain  
gi|253990300|ref|YP_003041656.1|   1.18e-25   1-166   Cloacin translocation domain  
gi|253991269|ref|YP_003042625.1|   0.0000146   2-28   Cloacin translocation domain  
gi|253991377|ref|YP_003042733.1|   2.22e-50   219-442   Cloacin translocation domain  

Photorhabdus luminescens subsp. laumondii TTO1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|37524878|ref|NP_928222.1|   9.16e-43   217-425   Cloacin translocation domain  
gi|37525817|ref|NP_929161.1|   9.42e-61   220-454   Cloacin translocation domain  
gi|37528015|ref|NP_931360.1|   3.4e-43   215-422   Cloacin translocation domain  

Xenorhabdus bovienii SS-2004 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|290474137|ref|YP_003467014.1|   2.35e-23   298-436   Cloacin translocation domain  

Providencia stuartii MRSN 2154 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|386742654|ref|YP_006215833.1|   0.0000000497   303-503   Cloacin translocation domain  
gi|386743273|ref|YP_006216452.1|   0.0000000654   288-504   Cloacin translocation domain  

Proteus mirabilis HI4320 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|197285763|ref|YP_002151635.1|   0.0000000000000288   206-372   Cloacin translocation domain  
gi|197285766|ref|YP_002151638.1|   0.00000562   198-345   Cloacin translocation domain  

Rahnella sp. Y9602 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|322831695|ref|YP_004211722.1|   1.02e-19   227-462   Cloacin translocation domain  

Rahnella aquatilis CIP 78.65 = ATCC 33071 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|383188950|ref|YP_005199078.1|   4.97e-23   219-423,453-474   Cloacin translocation domain  
gi|383191462|ref|YP_005201590.1|   1.29e-47   407-702   Cloacin translocation domain  

Yersinia pseudotuberculosis IP 31758 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|153948097|ref|YP_001399161.1|   4.32e-54   239-496   Cloacin translocation domain  
gi|153950882|ref|YP_001399881.1|   4.45e-25   206-421   Cloacin translocation domain  

Yersinia pestis Pestoides F has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|145597948|ref|YP_001162024.1|   1.1e-24   210-416   Cloacin translocation domain  

Serratia proteamaculans 568 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|157368779|ref|YP_001476768.1|   7.72e-49   298-574   Cloacin translocation domain  

Pectobacterium wasabiae WPP163 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|261821049|ref|YP_003259155.1|   2.62e-21   321-472   Cloacin translocation domain  

Pectobacterium sp. SCC3193 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|470154056|ref|YP_006282558.1|   4.71e-20   322-475   Cloacin translocation domain  

Pectobacterium atrosepticum SCRI1043 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|50120601|ref|YP_049768.1|   1.03e-20   310-484   Cloacin translocation domain  

Pantoea sp. At-9b has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|317053876|ref|YP_004117901.1|   4.53e-37   363-663   Cloacin translocation domain  

Erwinia tasmaniensis Et1/99 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|188535867|ref|YP_001905927.1|   1.02e-36   266-532   Cloacin translocation domain  

Enterobacteriaceae bacterium strain FGI 57 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|440288502|ref|YP_007341267.1|   1.57e-36   286-467   Cloacin translocation domain  

Enterobacter aerogenes KCTC 2190 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|336250948|ref|YP_004594658.1|   4.32e-45   322-582   Cloacin translocation domain  

Enterobacter asburiae LF7a has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|345297674|ref|YP_004827032.1|   9.42e-22   261-447   Cloacin translocation domain  

Enterobacter cloacae subsp. dissolvens SDM has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|392978859|ref|YP_006477447.1|   7.46e-17   110-271   Cloacin translocation domain  

Citrobacter koseri ATCC BAA-895 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
gi|157146674|ref|YP_001453993.1|   6.28e-34   276-472   Cloacin translocation domain  
gi|157149309|ref|YP_001456627.1|   2.88e-71   1-225   Cloacin translocation domain  

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Showing genomes 1 to 25 of 111

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View all assignments containing a Cloacin translocation domain domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   14224 14224
No Yes Candidatus Saccharimonas aalborgensis   1 1
No Yes Vibrio harveyi ATCC BAA-1116   1 1
No Yes Vibrio parahaemolyticus RIMD 2210633   1 1
No Yes Vibrio anguillarum 775   1 1
No Yes Marinobacter aquaeolei VT8   1 1
No Yes Photorhabdus asymbiotica   8 8
No Yes Photorhabdus luminescens subsp. laumondii TTO1   3 3
No Yes Xenorhabdus bovienii SS-2004   1 1
No Yes Providencia stuartii MRSN 2154   2 2
No Yes Proteus mirabilis HI4320   2 2
No Yes Rahnella sp. Y9602   1 1
No Yes Rahnella aquatilis CIP 78.65 = ATCC 33071   2 2
No Yes Yersinia pseudotuberculosis IP 31758   2 2
No Yes Yersinia pestis Pestoides F   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Pectobacterium wasabiae WPP163   1 1
No Yes Pectobacterium sp. SCC3193   1 1
No Yes Pectobacterium atrosepticum SCRI1043   1 1
No Yes Pantoea sp. At-9b   1 1
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Enterobacteriaceae bacterium strain FGI 57   1 1
No Yes Enterobacter aerogenes KCTC 2190   1 1
No Yes Enterobacter asburiae LF7a   1 1
No Yes Enterobacter cloacae subsp. dissolvens SDM   1 1
No Yes Citrobacter koseri ATCC BAA-895   2 2
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   2 2
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   2 2
No Yes Vibrio anguillarum Listonella anguillarum M3   1 1
No Yes Rahnella aquatilis HX2   2 2
No Yes Yersinia pseudotuberculosis PB1/+   2 2
No Yes Yersinia pseudotuberculosis YPIII   2 2
No Yes Yersinia pseudotuberculosis IP 32953   1 1
No Yes Yersinia pestis biovar Microtus str. 91001   1 1
No Yes Yersinia pestis A1122   1 1
No Yes Yersinia pestis Z176003   2 2
No Yes Yersinia pestis D182038   2 2
No Yes Yersinia pestis D106004   2 2
No Yes Yersinia pestis biovar Medievalis str. Harbin 35   2 2
No Yes Yersinia pestis Nepal516   2 2
No Yes Yersinia pestis Antiqua   2 2
No Yes Yersinia pestis Angola   2 2
No Yes Yersinia pestis CO92   1 1
No Yes Yersinia pestis KIM10+   2 2
No Yes Yersinia enterocolitica subsp. palearctica 105.5R(r)   2 1
No Yes Yersinia enterocolitica subsp. palearctica Y11   2 1
No Yes Serratia plymuthica S13   3 3
No Yes Serratia plymuthica 4Rx13   3 3
No Yes Serratia marcescens WW4   4 4
No Yes Serratia liquefaciens ATCC 27592   1 1
No Yes Pectobacterium carotovorum subsp. carotovorum PCC21   3 2
No Yes Shigella flexneri 2002017   1 1
No Yes Salmonella bongori N268-08   1 1
No Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980   1 1
No Yes Klebsiella pneumoniae JM45   3 3
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   3 3
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli E. coli PMV-1   1 1
No Yes Escherichia coli JJ1886   1 1
No Yes Escherichia coli NA114   1 1
No Yes Escherichia coli str. 'clone D i2'   1 1
No Yes Escherichia coli str. 'clone D i14'   1 1
No Yes Escherichia coli UM146   1 1
No Yes Escherichia coli IHE3034   1 1
No Yes Escherichia coli O83:H1 str. NRG 857C   1 1
No Yes Escherichia coli ABU 83972   1 1
No Yes Escherichia coli LF82   1 1
No Yes Escherichia coli ED1a   1 1
No Yes Escherichia coli S88   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli SE15   1 1
No Yes Escherichia coli APEC O1   1 1
No Yes Escherichia coli UTI89   1 1
No Yes Escherichia coli 536   1 1
No Yes Escherichia coli O111:H- str. 11128   3 2
No Yes Enterobacter cloacae subsp. cloacae ENHKU01   1 1
No Yes Enterobacter cloacae subsp. cloacae NCTC 9394   1 1
No Yes Enterobacter cloacae subsp. cloacae ATCC 13047   3 3
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas syringae pv. syringae B728a   3 3
No Yes Pseudomonas monteilii SB3101   1 1
No Yes Pseudomonas monteilii SB3078   1 1
No Yes Pseudomonas putida HB3267   2 2
No Yes Pseudomonas putida S16   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida ND6   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas putida GB-1   3 3
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Pseudomonas fluorescens F113   3 3
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas fluorescens R124   3 3
No Yes Pseudomonas fluorescens Pf0-1   6 6
No Yes Pseudomonas aeruginosa SCV20265   2 2
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   1 1
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Pseudomonas aeruginosa PAO1   2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   3 3
No Yes Combined (meta-genome)   8 8
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   7 7
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   2 2
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   4 4
No Yes Endophytic microbiome from Rice (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   4 4
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   13 13
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   11 11
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   6 6
No Yes NCBI 2017_08 genome   12084 11516
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   7 7
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   1 1
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   76 75
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   16 16
No Yes Uniprot 2018_03 genome   1638 1582
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes NCBI plasmid sequences (Plasmids)   35 33
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   16 16
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   19 19
No Yes TargetDB (Targets)   18 18
No Yes The Salmonella enterica Pan-genome (meta-genome)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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