SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Integrin beta tail domain domains in all genomes


Integrin beta tail domain superfamily domain assignments
in
all genomes

Assignment details

(show help)

25 selected genomes have 217 significant domains in 217 proteins.

Showing genomes 1 to 25 of 207
  1 2 3 4 5 6 7 8 9   Next Last

Homo sapiens 76_38 has 25 significant domains in 25 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSP00000200181   1.83e-18   624-709   Integrin beta tail domain  
ENSP00000267082   0.00000000000366   644-715   Integrin beta tail domain  
ENSP00000283249   1.22e-18   622-705   Integrin beta tail domain  
ENSP00000296181   9.15e-19   633-715   Integrin beta tail domain  
ENSP00000303242   6.93e-18   621-697   Integrin beta tail domain  
ENSP00000303351   4.05e-22   638-726   Integrin beta tail domain  
ENSP00000347279   6.93e-18   621-697   Integrin beta tail domain  
ENSP00000379350   4.05e-22   638-726   Integrin beta tail domain  
ENSP00000380948   6.93e-18   621-697   Integrin beta tail domain  
ENSP00000380950   6.93e-18   621-697   Integrin beta tail domain  
ENSP00000380952   6.28e-18   564-640   Integrin beta tail domain  
ENSP00000380955   6.93e-18   621-697   Integrin beta tail domain  
ENSP00000386367   1.22e-18   622-705   Integrin beta tail domain  
ENSP00000386828   0.00000000432   511-598   Integrin beta tail domain  
ENSP00000388694   4.05e-22   638-726   Integrin beta tail domain  
ENSP00000400217   1.83e-18   624-709   Integrin beta tail domain  
ENSP00000405536   1.7e-18   624-709   Integrin beta tail domain  
ENSP00000408024   1.12e-18   580-663   Integrin beta tail domain  
ENSP00000408741   0.00000000000366   644-715   Integrin beta tail domain  
ENSP00000420814   3.79e-17   323-400   Integrin beta tail domain  
ENSP00000452786   9.15e-24   632-716   Integrin beta tail domain  
ENSP00000455374   0.000000000106   497-567   Integrin beta tail domain  
ENSP00000456711   9.15e-24   621-705   Integrin beta tail domain  
ENSP00000463651   1.7e-18   624-709   Integrin beta tail domain  
ENSP00000481183   1.02e-18   527-610   Integrin beta tail domain  
 
Weak hits:
ENSP00000456446   0.0209   3-51   Integrin beta tail domain  

Pan troglodytes 76_2.1.4 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000004110   4.05e-22   638-726   Integrin beta tail domain  
ENSPTRP00000008519   0.0000000000017   644-715   Integrin beta tail domain  
ENSPTRP00000016404   1.83e-18   624-709   Integrin beta tail domain  
ENSPTRP00000021483   1.44e-18   622-705   Integrin beta tail domain  
ENSPTRP00000051108   9.15e-19   633-715   Integrin beta tail domain  
ENSPTRP00000055015   6.93e-18   621-697   Integrin beta tail domain  

Gorilla gorilla 76_3.1 has 10 significant domains in 10 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGGOP00000005989   4.05e-22   638-726   Integrin beta tail domain  
ENSGGOP00000006652   0.0000000000017   644-715   Integrin beta tail domain  
ENSGGOP00000007587   9.15e-24   632-716   Integrin beta tail domain  
ENSGGOP00000009194   1.22e-18   622-705   Integrin beta tail domain  
ENSGGOP00000009308   1.83e-18   624-709   Integrin beta tail domain  
ENSGGOP00000011589   8.89e-19   619-701   Integrin beta tail domain  
ENSGGOP00000014106   9.42e-18   621-697   Integrin beta tail domain  
ENSGGOP00000023681   9.02e-19   629-711   Integrin beta tail domain  
ENSGGOP00000023967   1.7e-18   624-709   Integrin beta tail domain  
ENSGGOP00000024170   9.15e-24   628-712   Integrin beta tail domain  

Pongo abelii 76_2 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPPYP00000002560   4.71e-22   727-815   Integrin beta tail domain  
ENSPPYP00000005214   0.00000000000119   643-715   Integrin beta tail domain  
ENSPPYP00000009696   1.83e-18   658-743   Integrin beta tail domain  
ENSPPYP00000010043   9.15e-24   632-716   Integrin beta tail domain  
ENSPPYP00000012844   3.27e-17   621-697   Integrin beta tail domain  
ENSPPYP00000014370   6.15e-19   548-631   Integrin beta tail domain  
ENSPPYP00000015061   8.11e-19   525-607   Integrin beta tail domain  
ENSPPYP00000023765   3.27e-17   621-697   Integrin beta tail domain  

Nomascus leucogenys 76_1.0 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSNLEP00000000814   9.55e-19   610-692   Integrin beta tail domain  
ENSNLEP00000001765   3.53e-18   625-710   Integrin beta tail domain  
ENSNLEP00000001972   1.22e-18   622-705   Integrin beta tail domain  
ENSNLEP00000002952   3.4e-18   614-690   Integrin beta tail domain  
ENSNLEP00000005694   9.15e-24   632-716   Integrin beta tail domain  
ENSNLEP00000021501   0.00000000000222   644-716   Integrin beta tail domain  
ENSNLEP00000022034   4.05e-22   638-726   Integrin beta tail domain  
ENSNLEP00000023995   0.00000000000222   644-716   Integrin beta tail domain  

Papio anubis 76 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPANP00000001100   1.31e-18   622-705   Integrin beta tail domain  
ENSPANP00000004875   9.94e-19   633-715   Integrin beta tail domain  
ENSPANP00000008565   0.00000000379   628-696   Integrin beta tail domain  
ENSPANP00000011606   1.7e-16   625-709   Integrin beta tail domain  
ENSPANP00000012723   5.36e-18   771-847   Integrin beta tail domain  
ENSPANP00000016153   4.05e-18   580-664   Integrin beta tail domain  
ENSPANP00000020121   2.88e-22   639-727   Integrin beta tail domain  
ENSPANP00000020867   9.15e-24   632-716   Integrin beta tail domain  

Macaca mulatta 76_1 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMMUP00000001276   5.49e-18   623-699   Integrin beta tail domain  
ENSMMUP00000003607   1.31e-18   622-705   Integrin beta tail domain  
ENSMMUP00000004380   8.76e-24   608-692   Integrin beta tail domain  
ENSMMUP00000006941   0.0000000000222   569-641   Integrin beta tail domain  
ENSMMUP00000006942   0.000000000562   422-493   Integrin beta tail domain  
ENSMMUP00000019059   9.94e-19   633-715   Integrin beta tail domain  
ENSMMUP00000023374   0.0000012   638-670   Integrin beta tail domain  

Callithrix jacchus 76_3.2.1 has 18 significant domains in 18 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCJAP00000012245   2.62e-18   633-715   Integrin beta tail domain  
ENSCJAP00000019503   2.88e-16   625-701   Integrin beta tail domain  
ENSCJAP00000019509   4.58e-17   512-588   Integrin beta tail domain  
ENSCJAP00000025265   4.32e-22   638-726   Integrin beta tail domain  
ENSCJAP00000025273   4.32e-22   638-726   Integrin beta tail domain  
ENSCJAP00000025955   2.62e-18   625-710   Integrin beta tail domain  
ENSCJAP00000026007   2.75e-18   625-710   Integrin beta tail domain  
ENSCJAP00000026017   2.75e-18   625-710   Integrin beta tail domain  
ENSCJAP00000026019   2.75e-18   625-710   Integrin beta tail domain  
ENSCJAP00000027461   7.72e-19   580-663   Integrin beta tail domain  
ENSCJAP00000027468   8.24e-19   622-705   Integrin beta tail domain  
ENSCJAP00000034095   0.000000484   487-544   Integrin beta tail domain  
ENSCJAP00000034099   0.00000000000824   644-716   Integrin beta tail domain  
ENSCJAP00000036951   1.06e-23   632-716   Integrin beta tail domain  
ENSCJAP00000036958   4.32e-20   632-714   Integrin beta tail domain  
ENSCJAP00000044463   4.32e-22   638-726   Integrin beta tail domain  
ENSCJAP00000048999   1.14e-16   622-706   Integrin beta tail domain  
ENSCJAP00000051822   2.75e-18   625-710   Integrin beta tail domain  

Otolemur garnettii 76_3 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOGAP00000001708   4.97e-16   632-721   Integrin beta tail domain  
ENSOGAP00000002595   2.35e-18   621-704   Integrin beta tail domain  
ENSOGAP00000006757   1.07e-22   638-726   Integrin beta tail domain  
ENSOGAP00000008621   9.29e-17   589-666   Integrin beta tail domain  
ENSOGAP00000013147   0.00000000000575   644-716   Integrin beta tail domain  
ENSOGAP00000013406   2.48e-18   620-702   Integrin beta tail domain  
ENSOGAP00000014187   4.45e-24   625-709   Integrin beta tail domain  

Microcebus murinus 76_1 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMICP00000001206   2.22e-17   609-688   Integrin beta tail domain  
ENSMICP00000002727   1.11e-16   591-667   Integrin beta tail domain  
ENSMICP00000006888   0.000000484   596-637   Integrin beta tail domain  
ENSMICP00000007568   1.96e-18   600-683   Integrin beta tail domain  
ENSMICP00000009814   1.26e-23   631-715   Integrin beta tail domain  
ENSMICP00000012948   0.00000000000445   644-716   Integrin beta tail domain  

Rattus norvegicus 76_5.0 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSRNOP00000001639   5.23e-18   621-697   Integrin beta tail domain  
ENSRNOP00000011030   3.27e-18   622-704   Integrin beta tail domain  
ENSRNOP00000014785   1.83e-21   638-726   Integrin beta tail domain  
ENSRNOP00000016642   0.0000000000693   645-710   Integrin beta tail domain  
ENSRNOP00000054350   1.57e-18   633-716   Integrin beta tail domain  
ENSRNOP00000059783   6.02e-17   626-710   Integrin beta tail domain  
ENSRNOP00000067271   0.0000000000051   632-715   Integrin beta tail domain  
 
Weak hits:
ENSRNOP00000034518   0.0017   639-701   Integrin beta tail domain  

Mus musculus 76_38 has 19 significant domains in 19 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000000161   0.0000719   593-665   Integrin beta tail domain  
ENSMUSP00000000299   0.00000000000000103   625-699   Integrin beta tail domain  
ENSMUSP00000001327   0.0000000000301   644-708   Integrin beta tail domain  
ENSMUSP00000021028   7.59e-23   631-715   Integrin beta tail domain  
ENSMUSP00000021107   3.79e-16   626-710   Integrin beta tail domain  
ENSMUSP00000028348   1.83e-18   622-704   Integrin beta tail domain  
ENSMUSP00000054944   1.83e-18   622-704   Integrin beta tail domain  
ENSMUSP00000069416   1.18e-18   633-716   Integrin beta tail domain  
ENSMUSP00000070811   1.57e-17   626-711   Integrin beta tail domain  
ENSMUSP00000087457   8.5e-22   638-726   Integrin beta tail domain  
ENSMUSP00000102066   1.57e-17   626-711   Integrin beta tail domain  
ENSMUSP00000102068   1.57e-17   626-711   Integrin beta tail domain  
ENSMUSP00000102069   1.57e-17   626-711   Integrin beta tail domain  
ENSMUSP00000108136   1.83e-18   622-704   Integrin beta tail domain  
ENSMUSP00000109403   0.0000785   593-665   Integrin beta tail domain  
ENSMUSP00000110680   1.14e-18   633-716   Integrin beta tail domain  
ENSMUSP00000117815   1.7e-18   622-704   Integrin beta tail domain  
ENSMUSP00000119699   0.0000000000889   2-37   Integrin beta tail domain  
ENSMUSP00000127604   3.79e-16   626-710   Integrin beta tail domain  

Dipodomys ordii 76_1 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSDORP00000002790   0.0000000000379   559-630   Integrin beta tail domain  
ENSDORP00000003778   0.0000314   631-668   Integrin beta tail domain  
ENSDORP00000005125   3.14e-16   627-704   Integrin beta tail domain  
ENSDORP00000006900   9.29e-17   374-449   Integrin beta tail domain  
ENSDORP00000007294   2.48e-21   638-726   Integrin beta tail domain  
ENSDORP00000007625   4.97e-18   625-710   Integrin beta tail domain  
ENSDORP00000011790   1.03e-16   621-698   Integrin beta tail domain  

Ictidomys tridecemlineatus 76_2 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSTOP00000001265   2.62e-16   621-698   Integrin beta tail domain  
ENSSTOP00000002538   1.01e-22   608-692   Integrin beta tail domain  
ENSSTOP00000007138   3.01e-18   633-715   Integrin beta tail domain  
ENSSTOP00000007370   6.93e-18   621-704   Integrin beta tail domain  
ENSSTOP00000010044   0.00000000000379   644-715   Integrin beta tail domain  
ENSSTOP00000012063   3.66e-22   638-726   Integrin beta tail domain  
ENSSTOP00000020709   4.05e-18   629-714   Integrin beta tail domain  

Heterocephalus glaber v1.7-2 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
HGL_H00000200181   2.22e-17   643-727   Integrin beta tail domain  
HGL_H00000262017   3.4e-24   608-692   Integrin beta tail domain  
HGL_H00000296181   1.44e-17   620-702   Integrin beta tail domain  
HGL_H00000364094   3.01e-22   638-726   Integrin beta tail domain  
HGL_H00000380948   9.02e-16   911-988   Integrin beta tail domain  
HGL_H00000386367   2.75e-17   622-705   Integrin beta tail domain  
HGL_H00000408741   0.0000000000112   639-708   Integrin beta tail domain  

Cavia porcellus 76_3 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCPOP00000008089   8.76e-22   639-727   Integrin beta tail domain  
ENSCPOP00000008624   4.18e-18   626-708   Integrin beta tail domain  
ENSCPOP00000010138   7.98e-24   607-691   Integrin beta tail domain  
ENSCPOP00000011065   2.48e-18   622-705   Integrin beta tail domain  
ENSCPOP00000011385   2.22e-17   625-709   Integrin beta tail domain  
ENSCPOP00000013352   0.00000000000129   645-717   Integrin beta tail domain  
ENSCPOP00000014847   6.54e-16   618-694   Integrin beta tail domain  
ENSCPOP00000018590   1.57e-18   481-564   Integrin beta tail domain  

Oryctolagus cuniculus 76_2 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOCUP00000001228   0.000000000017   644-714   Integrin beta tail domain  
ENSOCUP00000003143   1.31e-22   638-726   Integrin beta tail domain  
ENSOCUP00000009929   0.0000000000000051   620-700   Integrin beta tail domain  
ENSOCUP00000012560   1.09e-18   633-715   Integrin beta tail domain  
ENSOCUP00000012771   1.44e-18   621-703   Integrin beta tail domain  
ENSOCUP00000020096   2.22e-23   605-689   Integrin beta tail domain  

Ochotona princeps 76 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOPRP00000003275   2.35e-20   555-640   Integrin beta tail domain  
ENSOPRP00000006279   0.00000000157   599-670   Integrin beta tail domain  
ENSOPRP00000009551   3.4e-19   632-714   Integrin beta tail domain  
ENSOPRP00000011325   7.85e-18   621-704   Integrin beta tail domain  
ENSOPRP00000011640   6.28e-17   624-708   Integrin beta tail domain  
ENSOPRP00000014223   0.000000000000157   642-713   Integrin beta tail domain  

Tupaia belangeri 76 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTBEP00000000201   4.97e-17   621-698   Integrin beta tail domain  
ENSTBEP00000000748   1.44e-18   632-714   Integrin beta tail domain  
ENSTBEP00000005515   0.0000000392   638-679   Integrin beta tail domain  
ENSTBEP00000013502   0.0000000000222   666-710   Integrin beta tail domain  
ENSTBEP00000013523   0.00000000000837   643-714   Integrin beta tail domain  
ENSTBEP00000013698   2.48e-18   622-705   Integrin beta tail domain  

Sus scrofa 76_10.2 has 10 significant domains in 10 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSSCP00000000272   0.00000000000863   646-716   Integrin beta tail domain  
ENSSSCP00000011838   1.01e-22   638-726   Integrin beta tail domain  
ENSSSCP00000016835   6.28e-19   430-513   Integrin beta tail domain  
ENSSSCP00000018227   1.03e-16   625-712   Integrin beta tail domain  
ENSSSCP00000018339   4.97e-24   628-712   Integrin beta tail domain  
ENSSSCP00000028146   2.62e-17   621-698   Integrin beta tail domain  
ENSSSCP00000029145   4.97e-24   628-712   Integrin beta tail domain  
ENSSSCP00000029678   3.53e-18   625-710   Integrin beta tail domain  
ENSSSCP00000029748   3.66e-18   625-710   Integrin beta tail domain  
ENSSSCP00000030775   1.02e-22   638-726   Integrin beta tail domain  

Bos taurus 76_3.1 has 8 significant domains in 8 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSBTAP00000011972   1.96e-18   622-705   Integrin beta tail domain  
ENSBTAP00000013173   2.09e-23   628-712   Integrin beta tail domain  
ENSBTAP00000018278   4.45e-20   582-665   Integrin beta tail domain  
ENSBTAP00000021156   1.01e-22   638-726   Integrin beta tail domain  
ENSBTAP00000022687   6.28e-17   621-698   Integrin beta tail domain  
ENSBTAP00000025279   0.0000000000000392   646-717   Integrin beta tail domain  
ENSBTAP00000040201   1.83e-18   625-710   Integrin beta tail domain  
ENSBTAP00000052015   1.02e-22   638-726   Integrin beta tail domain  

Ovis aries 76_3.1 has 6 significant domains in 6 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOARP00000007475   4.58e-16   622-704   Integrin beta tail domain  
ENSOARP00000010482   2.62e-17   627-714   Integrin beta tail domain  
ENSOARP00000012710   1.96e-23   622-706   Integrin beta tail domain  
ENSOARP00000017878   0.000000000000628   644-715   Integrin beta tail domain  
ENSOARP00000018925   1.01e-22   638-726   Integrin beta tail domain  
ENSOARP00000021715   4.97e-20   635-718   Integrin beta tail domain  

Vicugna pacos 76_1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSVPAP00000002512   1.11e-17   622-705   Integrin beta tail domain  
ENSVPAP00000003830   0.00000000000575   622-692   Integrin beta tail domain  
ENSVPAP00000007280   1.16e-19   586-674   Integrin beta tail domain  

Tursiops truncatus 76_1 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTTRP00000000898   0.00000000000667   625-681   Integrin beta tail domain  
ENSTTRP00000002605   0.0000000000248   635-705   Integrin beta tail domain  
ENSTTRP00000009434   1.44e-22   638-726   Integrin beta tail domain  
ENSTTRP00000010467   5.1e-18   622-705   Integrin beta tail domain  
ENSTTRP00000012871   0.000000000034   667-711   Integrin beta tail domain  
ENSTTRP00000014173   0.000000000000667   616-698   Integrin beta tail domain  
ENSTTRP00000015053   0.0000000000000144   625-692   Integrin beta tail domain  

Mustela putorius furo 76_1.0 has 7 significant domains in 7 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMPUP00000000529   2.75e-18   642-725   Integrin beta tail domain  
ENSMPUP00000004253   1.7e-18   633-716   Integrin beta tail domain  
ENSMPUP00000005859   6.67e-23   638-726   Integrin beta tail domain  
ENSMPUP00000006070   0.0000000000183   644-716   Integrin beta tail domain  
ENSMPUP00000008016   3.79e-24   489-573   Integrin beta tail domain  
ENSMPUP00000010194   0.00000000000000248   633-710   Integrin beta tail domain  
ENSMPUP00000013718   1.96e-16   626-709   Integrin beta tail domain  

  1 2 3 4 5 6 7 8 9   Next Last
Showing genomes 1 to 25 of 207

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]

Add assignments from groups of genomes

View all assignments containing a Integrin beta tail domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]

Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   7637 7637
No Yes Homo sapiens 76_38 Human 25 25
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 6 6
No Yes Gorilla gorilla 76_3.1 Western gorilla 10 10
No Yes Pongo abelii 76_2 Sumatran orangutan 8 8
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 8 8
No Yes Papio anubis 76 Olive baboon 8 8
No Yes Macaca mulatta 76_1 Rhesus monkey 7 7
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 18 18
No Yes Otolemur garnettii 76_3 Small-eared galago 7 7
No Yes Microcebus murinus 76_1 Gray mouse lemur 6 6
No Yes Rattus norvegicus 76_5.0 Norway rat 7 7
No Yes Mus musculus 76_38 House mouse 19 19
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 7 7
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 7 7
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 7 7
No Yes Cavia porcellus 76_3 Domestic guinea pig 8 8
No Yes Oryctolagus cuniculus 76_2 Rabbit 6 6
No Yes Ochotona princeps 76 American pika 6 6
No Yes Tupaia belangeri 76 Northern tree shrew 6 6
No Yes Sus scrofa 76_10.2 Pig 10 10
No Yes Bos taurus 76_3.1 Cattle 8 8
No Yes Ovis aries 76_3.1 Sheep 6 6
No Yes Vicugna pacos 76_1 Alpaca 3 3
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 7 7
No Yes Mustela putorius furo 76_1.0 Domestic ferret 7 7
No Yes Ailuropoda melanoleuca 76_1 Giant panda 7 7
No Yes Canis familiaris 76_3.1 Dog 9 9
No Yes Felis catus 76_6.2 Domestic cat 7 7
No Yes Equus caballus 76_2 Horse 8 8
No Yes Myotis lucifugus 76_2.0 Little brown bat 7 7
No Yes Pteropus vampyrus 76_1 Large flying fox 6 6
No Yes Sorex araneus 76_1 European shrew 4 4
No Yes Erinaceus europaeus 76 Western European hedgehog 5 5
No Yes Procavia capensis 76_1 Cape rock hyrax 7 7
No Yes Loxodonta africana 76_3 African savanna elephant 9 9
No Yes Echinops telfairi 76 Small Madagascar hedgehog 5 5
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 9 9
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 4 4
No Yes Macropus eugenii 76_1.0 Tammar wallaby 7 7
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 8 8
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 7 7
No Yes Ornithorhynchus anatinus 76_5 Platypus 5 5
No Yes Saccoglossus kowalevskii v3.0   3 3
No Yes Petromyzon marinus 76_7.0 Sea lamprey 6 6
No Yes Meleagris gallopavo 76_2 Turkey 6 6
No Yes Gallus gallus 76_4 Chicken 6 6
No Yes Anas platyrhynchos 76_1.0 Mallard 6 6
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 7 7
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 6 6
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 9 9
No Yes Anolis carolinensis 76_2.0 Green anole 7 7
No Yes Xenopus laevis African clawed frog 17 17
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 6 6
No Yes Latimeria chalumnae 76_1 Coelacanth 8 8
No Yes Lepisosteus oculatus 76 Spotted gar 11 11
No Yes Gadus morhua 76_1 Atlantic cod 3 3
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 15 15
No Yes Takifugu rubripes 76_4 Torafugu 54 54
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 15 15
No Yes Oryzias latipes 76_1 Japanese medaka 12 12
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 9 9
No Yes Poecilia formosa 76 Amazon molly 9 9
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 15 15
No Yes Astyanax mexicanus 76 Mexican tetra 10 10
No Yes Danio rerio 76_9 Zebrafish 15 15
No Yes Oikopleura dioica   1 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 3 3
No Yes Ciona intestinalis 76 Vase tunicate 2 2
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 3 3
No Yes Adineta vaga   2 2
No Yes Octopus bimaculoides 280   4 4
No Yes Crassostrea gigas 22 Pacific oyster 6 5
No Yes Lottia gigantea Owl limpet 4 4
No Yes Helobdella robusta   2 2
No Yes Capitella sp. I   3 3
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Heliconius melpomene Postman butterfly 1 1
No Yes Nasonia vitripennis Jewel wasp 3 3
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 5 5
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 2
No Yes Linepithema humile v1.1 Argentine ant 2 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 2 2
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 2
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 2
No Yes Atta cephalotes v1.1   2 2
No Yes Camponotus floridanus v3.3 Florida carpenter ant 2 2
No Yes Lucilia cuprina Australian sheep blowfly 2 1
No Yes Drosophila grimshawi 1.3   1 1
No Yes Drosophila willistoni 1.3   1 1
No Yes Drosophila pseudoobscura 2.13   1 1
No Yes Drosophila suzukii   1 1
No Yes Drosophila yakuba 1.3   1 1
No Yes Drosophila simulans 1.3   1 1
No Yes Drosophila sechellia 1.3   1 1
No Yes Drosophila melanogaster 76_5 Fruit fly 1 1
No Yes Drosophila erecta 1.3   1 1
No Yes Drosophila ananassae 1.3   1 1
No Yes Drosophila virilis 1.2   1 1
No Yes Drosophila mojavensis 1.3   1 1
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 1 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 2 2
No Yes Anopheles gambiae 49_3j African malaria mosquito 2 2
No Yes Tribolium castaneum 3.0 Red flour beetle 2 2
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 2
No Yes Acyrthosiphon pisum Pea aphid 2 2
No Yes Rhodnius prolixus 22   1 1
No Yes Daphnia pulex Common water flea 3 3
No Yes Strigamia maritima 22   2 2
No Yes Sarcoptes scabiei   1 1
No Yes Tetranychus urticae Two-spotted spider mite 1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 2 2
No Yes Pristionchus pacificus   1 1
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Meloidogyne hapla   1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 1 1
No Yes Caenorhabditis japonica   1 1
No Yes Caenorhabditis brenneri   2 2
No Yes Caenorhabditis remanei   1 1
No Yes Caenorhabditis elegans 76_235 Roundworm 1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   1 1
No Yes Mnemiopsis leidyi Sea walnut 1 1
No Yes Thelohanellus kitauei   1 1
No Yes Acropora digitifera v1.0   1 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 3 3
No Yes Hydra vulgaris   2 2
No Yes Amphimedon queenslandica   1 1
No Yes Trichoplax adhaerens   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 10 10
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 1 1
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 2
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 28 28
No Yes Homo sapiens (NCBI version) Human 12 12
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 8 8
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 1 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 2 2
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Homo sapiens 69_37 Human 8 8
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 6 6
No Yes Gorilla gorilla 69_3.1 Western gorilla 7 7
No Yes Pongo abelii 69_2 Sumatran orangutan 7 7
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 7 7
No Yes Macaca mulatta 69_1 Rhesus monkey 6 6
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 8 8
No Yes Otolemur garnettii 69_3 Small-eared galago 7 7
No Yes Microcebus murinus 69_1 Gray mouse lemur 6 6
No Yes Rattus norvegicus 69_3.4 Norway rat 6 6
No Yes Mus musculus 69_38 House mouse 8 8
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 7 7
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 7 7
No Yes Cavia porcellus 69_3 Domestic guinea pig 7 7
No Yes Oryctolagus cuniculus 69_2 Rabbit 6 6
No Yes Ochotona princeps 69 American pika 6 6
No Yes Tupaia belangeri 69 Northern tree shrew 6 6
No Yes Sus scrofa 69_10.2 Pig 6 6
No Yes Bos taurus 69_3.1 Cattle 7 7
No Yes Vicugna pacos 69_1 Alpaca 3 3
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 7 7
No Yes Mustela putorius furo 69_1.0 Domestic ferret 7 7
No Yes Ailuropoda melanoleuca 69_1 Giant panda 7 7
No Yes Canis familiaris 69_3.1 Dog 7 7
No Yes Felis catus 69 Domestic cat 4 4
No Yes Equus caballus 69_2 Horse 7 7
No Yes Myotis lucifugus 69_2.0 Little brown bat 7 7
No Yes Pteropus vampyrus 69_1 Large flying fox 6 6
No Yes Sorex araneus 69_1 European shrew 4 4
No Yes Erinaceus europaeus 69 Western European hedgehog 5 5
No Yes Procavia capensis 69_1 Cape rock hyrax 7 7
No Yes Loxodonta africana 69_3 African savanna elephant 7 7
No Yes Echinops telfairi 69 Small Madagascar hedgehog 5 5
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 5 5
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 4 4
No Yes Macropus eugenii 69_1.0 Tammar wallaby 7 7
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 7 7
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 6 6
No Yes Ornithorhynchus anatinus 69_5 Platypus 4 4
No Yes Petromyzon marinus 69_7.0 Sea lamprey 5 5
No Yes Meleagris gallopavo 69_2 Turkey 6 6
No Yes Gallus gallus 69_2 Chicken 6 6
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 7 7
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 6 6
No Yes Anolis carolinensis 69_2.0 Green anole 7 7
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 6 6
No Yes Latimeria chalumnae 69_1 Coelacanth 7 7
No Yes Gadus morhua 69_1 Atlantic cod 3 3
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 9 9
No Yes Takifugu rubripes 69_4 Torafugu 11 11
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 9 9
No Yes Oryzias latipes 69_1 Japanese medaka 8 8
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 9 9
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 10 10
No Yes Danio rerio 69_9 Zebrafish 9 9
No Yes Ciona intestinalis 69 Vase tunicate 2 2
No Yes Drosophila melanogaster 69_5 Fruit fly 1 1
No Yes Caenorhabditis elegans 69_215 Roundworm 1 1
No Yes NCBI 2017_08 genome   3576 3572
No Yes STRING v9.0.5 (STRING)   209 208
No Yes Uniprot 2018_03 genome   2087 2081
No Yes PDB chains (SCOP 1.75) (PDB)   1 1
No Yes Protein Data Bank (all PDB sequenc)   36 36
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   33 33
No Yes TargetDB (Targets)   4 4

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.