SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


IolI-like family domain assignments
in
all bacterial and archaeal genomes

Assignment details

(show help)

25 selected genomes have 26 significant domains in 26 proteins.

Showing genomes 1 to 25 of 230
  1 2 3 4 5 6 7 8 9 10   Next Last

Nakamurella multipartita DSM 44233 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|258654216|ref|YP_003203372.1|   6.22e-56   0.000000177   22-286   2g0w A:10-284  
 
Weak hits:
gi|258651038|ref|YP_003200194.1|   5.8e-50   0.00098   18-287   2g0w A:10-284  
gi|258651765|ref|YP_003200921.1|   2.21e-53   0.032   7-282   1i60 A:  
gi|258653539|ref|YP_003202695.1|   0.00000000348   0.024   1-156   1i60 A:  
gi|258653940|ref|YP_003203096.1|   1.19e-52   0.001   5-269   2g0w A:10-284  
gi|258654213|ref|YP_003203369.1|   1.13e-72   0.0035   10-275   1i60 A:  
gi|258655035|ref|YP_003204191.1|   7.88e-43   0.024   3-257   1i60 A:  

Frankia sp. EAN1pec has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|158318538|ref|YP_001511046.1|   2.63e-59   0.0000811   19-273   2g0w A:10-284  
 
Weak hits:
gi|158313334|ref|YP_001505842.1|   1.28e-48   0.0061   4-269   2g0w A:10-284  
gi|158315630|ref|YP_001508138.1|   4.83e-50   0.0012   12-277   2g0w A:10-284  
gi|158315699|ref|YP_001508207.1|   1.24e-45   0.00098   9-256   2g0w A:10-284  
gi|158316010|ref|YP_001508518.1|   4.56e-45   0.031   3-265   1i60 A:  
gi|158318869|ref|YP_001511377.1|   1.12e-47   0.019   13-277   2g0w A:10-284  

Caldilinea aerophila DSM 14535 = NBRC 104270 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|383763567|ref|YP_005442549.1|   5.25e-54   0.0000194   4-263   1i60 A:  
 
Weak hits:
gi|383762686|ref|YP_005441668.1|   3.04e-44   0.079   3-260   1i60 A:  
gi|383762802|ref|YP_005441784.1|   7.59e-58   0.021   4-315   1i60 A:  
gi|383763104|ref|YP_005442086.1|   2.63e-34   0.044   17-275   1i60 A:  
gi|383763106|ref|YP_005442088.1|   5.25e-47   0.049   1-273   1i60 A:  
gi|383763210|ref|YP_005442192.1|   4.58e-51   0.022   1-247   1i60 A:  
gi|383763569|ref|YP_005442551.1|   8.84e-57   0.055   6-300   1i60 A:  
gi|383764159|ref|YP_005443141.1|   2.23e-45   0.088   5-273   1i60 A:  
gi|383764413|ref|YP_005443395.1|   3.59e-41   0.085   13-286   2g0w A:10-284  

Ruminococcus sp. has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|479153752|ref|YP_007783527.1|   2.36e-54   0.00000159   1-266   1i60 A:  
gi|479155088|ref|YP_007784863.1|   1.66e-62   0.0000000788   5-277   2g0w A:10-284  
 
Weak hits:
gi|479152403|ref|YP_007782178.1|   6.5e-61   0.023   8-293   1i60 A:  
gi|479153754|ref|YP_007783529.1|   9.26e-38   0.047   10-259   1i60 A:  

Clostridium difficile 630 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|126700324|ref|YP_001089221.1|   9.67e-69   0.00000000475   8-280   2g0w A:10-284  
 
Weak hits:
gi|126701046|ref|YP_001089943.1|   0.00398   0.068   61-133   1i60 A:  

Clostridium ljungdahlii DSM 13528 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|300856039|ref|YP_003781023.1|   5.67e-64   0.000000102   12-286   2g0w A:10-284  
 
Weak hits:
gi|300855402|ref|YP_003780386.1|   2.9e-20   0.019   72-242   1i60 A:  
gi|300856725|ref|YP_003781709.1|   2.07e-33   0.024   2-260   1i60 A:  

Clostridium kluyveri DSM 555 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|153953641|ref|YP_001394406.1|   9.81e-67   0.00000000377   12-284   2g0w A:10-284  
 
Weak hits:
gi|153955962|ref|YP_001396727.1|   1.3e-36   0.0097   10-259   1i60 A:  

Tetragenococcus halophilus NBRC 12172 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|352516521|ref|YP_004885838.1|   1.7e-59   0.000000726   5-273   2g0w A:10-284  
 
Weak hits:
gi|352517398|ref|YP_004886715.1|   4.45e-48   0.019   1-308   1i60 A:  

Lactobacillus casei ATCC 334 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|116494033|ref|YP_805767.1|   1.52e-60   0.000000365   4-278   2g0w A:10-284  

Lactobacillus rhamnosus Lc 705 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|258538453|ref|YP_003172952.1|   8.98e-45   0.00000861   6-281   2q02 A:1-271  
 
Weak hits:
gi|258538450|ref|YP_003172949.1|   9.3e-63   0.078   8-296   2g0w A:10-284  

Lactobacillus salivarius CECT 5713 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|385839695|ref|YP_005877442.1|   5.53e-68   0.000000157   4-275   2g0w A:10-284  

Lactobacillus plantarum JDM1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|254557958|ref|YP_003064375.1|   2.07e-66   0.00000022   22-292   2g0w A:10-284  

Streptococcus uberis 0140J has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|222153487|ref|YP_002562664.1|   2.36e-59   0.000000199   6-274   2g0w A:10-284  

Streptococcus parauberis KCTC 11537 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|333905453|ref|YP_004479324.1|   1.96e-59   0.00000027   6-274   2g0w A:10-284  

Paenibacillus terrae HPL-003 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|374322413|ref|YP_005075542.1|   1.23e-65   0.0000000171   4-273   1i60 A:  
 
Weak hits:
gi|374320694|ref|YP_005073823.1|   5.67e-35   0.04   3-255   1i60 A:  
gi|374321106|ref|YP_005074235.1|   3.54e-48   0.042   16-250   1i60 A:  
gi|374322410|ref|YP_005075539.1|   1.31e-52   0.054   7-290   1i60 A:  
gi|374322421|ref|YP_005075550.1|   1.83e-48   0.033   1-285   1i60 A:  
gi|374323118|ref|YP_005076247.1|   2.07e-32   0.036   5-250   1i60 A:  
gi|374324291|ref|YP_005077420.1|   1.23e-41   0.006   1-280   1i60 A:  
gi|374324664|ref|YP_005077793.1|   1.15e-50   0.022   1-311   1i60 A:  

Paenibacillus mucilaginosus 3016 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|379720135|ref|YP_005312266.1|   4.84e-67   0.00000000565   4-274   1i60 A:  
 
Weak hits:
gi|379718142|ref|YP_005310273.1|   1.27e-51   0.022   1-311   1i60 A:  
gi|379719062|ref|YP_005311193.1|   1.96e-50   0.00075   14-271   1i60 A:  
gi|379719951|ref|YP_005312082.1|   0.000000000000174   0.047   16-184   2g0w A:10-284  
gi|379720132|ref|YP_005312263.1|   1.3e-54   0.011   7-291   1i60 A:  
gi|379720146|ref|YP_005312277.1|   1.96e-51   0.033   1-285   1i60 A:  
gi|379720555|ref|YP_005312686.1|   0.00000000000000221   0.028   17-181   1i60 A:  
gi|379721680|ref|YP_005313811.1|   2.63e-36   0.021   5-283   1i60 A:  
gi|379721939|ref|YP_005314070.1|   4.28e-36   0.035   1-269   1i60 A:  
gi|379722794|ref|YP_005314925.1|   6.68e-53   0.046   10-268   1i60 A:  
gi|379723433|ref|YP_005315564.1|   3.73e-56   0.039   12-298   1i60 A:  
gi|379724174|ref|YP_005316305.1|   5.37e-50   0.032   17-260   1i60 A:  
gi|379724273|ref|YP_005316404.1|   1.23e-47   0.031   1-270   1i60 A:  
gi|379724291|ref|YP_005316422.1|   2.09e-51   0.053   7-266   2q02 A:1-271  

Listeria welshimeri serovar 6b str. SLCC5334 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|116873667|ref|YP_850448.1|   7.74e-74   0.000000000244   10-282   2g0w A:10-284  
 
Weak hits:
gi|116873592|ref|YP_850373.1|   2.49e-52   0.035   1-311   1i60 A:  

Listeria innocua Clip11262 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|16801399|ref|NP_471667.1|   2.9e-74   0.000000000173   10-282   2g0w A:10-284  
 
Weak hits:
gi|16800232|ref|NP_470500.1|   0.0109   0.036   62-127   1i60 A:  
gi|16801327|ref|NP_471595.1|   2.75e-53   0.03   1-311   1i60 A:  
gi|16802026|ref|NP_472294.1|   1.35e-49   0.075   1-260   1i60 A:  

Listeria seeligeri serovar 1/2b str. SLCC3954 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|289435575|ref|YP_003465447.1|   9.67e-75   0.000000000193   10-282   2g0w A:10-284  
 
Weak hits:
gi|289434147|ref|YP_003464019.1|   7e-27   0.027   4-242   2q02 A:1-271  
gi|289434965|ref|YP_003464837.1|   0.00373   0.035   288-435   2q02 A:1-271  
gi|289435507|ref|YP_003465379.1|   1.87e-51   0.026   1-310   1i60 A:  

Listeria monocytogenes serotype 4b str. CLIP 80459 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|226224842|ref|YP_002758949.1|   7.75e-74   0.000000000113   10-282   2g0w A:10-284  
 
Weak hits:
gi|226223498|ref|YP_002757605.1|   6.63e-30   0.018   4-237   1i60 A:  
gi|226224767|ref|YP_002758874.1|   2.75e-53   0.03   1-311   1i60 A:  

Listeria ivanovii subsp. ivanovii PAM 55 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|347549625|ref|YP_004855953.1|   4.15e-73   0.000000000222   10-282   2g0w A:10-284  
 
Weak hits:
gi|347548040|ref|YP_004854368.1|   6.77e-33   0.0056   2-255   1i60 A:  
gi|347548285|ref|YP_004854613.1|   4.01e-29   0.026   5-240   1i60 A:  
gi|347549556|ref|YP_004855884.1|   1.2e-51   0.029   1-311   1i60 A:  
gi|347550146|ref|YP_004856474.1|   1.93e-48   0.033   1-260   1i60 A:  

Geobacillus kaustophilus HTA426 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|56420427|ref|YP_147745.1|   5.39e-63   0.000000393   1-268   1i60 A:  
 
Weak hits:
gi|56420425|ref|YP_147743.1|   7.07e-63   0.03   9-299   1i60 A:  
gi|56420646|ref|YP_147964.1|   1.52e-52   0.029   1-311   1i60 A:  
gi|56421729|ref|YP_149047.1|   0.00104   0.058   37-127   2g0w A:10-284  

Bacillus sp. JS has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|386760670|ref|YP_006233887.1|   2.09e-69   0.000000000381   5-275   1i60 A:  
 
Weak hits:
gi|386760375|ref|YP_006233592.1|   1.1e-17   0.088   76-276   1i60 A:  
gi|386760671|ref|YP_006233888.1|   4.19e-54   0.023   1-286   1i60 A:  
gi|386760674|ref|YP_006233891.1|   6.08e-52   0.049   7-291   1i60 A:  

Bacillus amyloliquefaciens FZB42 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|154688069|ref|YP_001423230.1|   6.28e-68   0.000000000761   5-272   1i60 A:  
 
Weak hits:
gi|154684808|ref|YP_001419969.1|   5.24e-45   0.06   1-248   1i60 A:  
gi|154687834|ref|YP_001422995.1|   2.94e-16   0.077   56-253   1i60 A:  
gi|154688070|ref|YP_001423231.1|   1.96e-54   0.029   1-281   1i60 A:  
gi|154688073|ref|YP_001423234.1|   2.9e-55   0.037   7-290   2g0w A:10-284  

Bacillus atrophaeus 1942 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
gi|311070495|ref|YP_003975418.1|   4.45e-68   0.000000000624   5-273   1i60 A:  
 
Weak hits:
gi|311067574|ref|YP_003972497.1|   0.000000133   0.072   2-52   2g0w A:10-284  
gi|311070496|ref|YP_003975419.1|   7.86e-54   0.016   1-284   1i60 A:  
gi|311070499|ref|YP_003975422.1|   1.35e-52   0.052   7-293   2g0w A:10-284  
gi|311070966|ref|YP_003975889.1|   9.95e-43   0.012   1-255   1i60 A:  

  1 2 3 4 5 6 7 8 9 10   Next Last
Showing genomes 1 to 25 of 230

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a IolI-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   17118 17118
No Yes Nakamurella multipartita DSM 44233   1 1
No Yes Frankia sp. EAN1pec   1 1
No Yes Caldilinea aerophila DSM 14535 = NBRC 104270   1 1
No Yes Ruminococcus sp.   2 2
No Yes Clostridium difficile 630   1 1
No Yes Clostridium ljungdahlii DSM 13528   1 1
No Yes Clostridium kluyveri DSM 555   1 1
No Yes Tetragenococcus halophilus NBRC 12172   1 1
No Yes Lactobacillus casei ATCC 334   1 1
No Yes Lactobacillus rhamnosus Lc 705   1 1
No Yes Lactobacillus salivarius CECT 5713   1 1
No Yes Lactobacillus plantarum JDM1   1 1
No Yes Streptococcus uberis 0140J   1 1
No Yes Streptococcus parauberis KCTC 11537   1 1
No Yes Paenibacillus terrae HPL-003   1 1
No Yes Paenibacillus mucilaginosus 3016   1 1
No Yes Listeria welshimeri serovar 6b str. SLCC5334   1 1
No Yes Listeria innocua Clip11262   1 1
No Yes Listeria seeligeri serovar 1/2b str. SLCC3954   1 1
No Yes Listeria monocytogenes serotype 4b str. CLIP 80459   1 1
No Yes Listeria ivanovii subsp. ivanovii PAM 55   1 1
No Yes Geobacillus kaustophilus HTA426   1 1
No Yes Bacillus sp. JS   1 1
No Yes Bacillus amyloliquefaciens FZB42   1 1
No Yes Bacillus atrophaeus 1942   1 1
No Yes Bacillus subtilis subsp. subtilis str. 168   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus halodurans C-125   1 1
No Yes Bacillus megaterium DSM 319   1 1
No Yes Spirochaeta smaragdinae DSM 11293   2 2
No Yes Sphaerochaeta globus str. Buddy   1 1
No Yes Treponema primitia ZAS-2   1 1
No Yes Thermotoga thermarum DSM 5069   1 1
No Yes Leptothrix cholodnii SP-6   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Delftia acidovorans SPH-1   1 1
No Yes Pseudovibrio sp. FO-BEG1   1 1
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Acidiphilium multivorum AIU301   2 2
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   2 2
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium radiobacter K84   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Hahella chejuensis KCTC 2396   1 1
No Yes Serratia sp. AS12   1 1
No Yes Serratia plymuthica AS9   1 1
No Yes Serratia proteamaculans 568   1 1
No Yes Pantoea sp. At-9b   1 1
No Yes Pantoea vagans C9-1   2 2
No Yes Pantoea ananatis LMG 20103   1 1
No Yes Erwinia tasmaniensis Et1/99   1 1
No Yes Erwinia billingiae Eb661   1 1
No Yes Cronobacter turicensis z3032   1 1
No Yes Cronobacter sakazakii ES15   1 1
No Yes Klebsiella oxytoca E718   1 1
No Yes Klebsiella variicola At-22   1 1
No Yes Klebsiella pneumoniae NTUH-K2044   1 1
No Yes Enterobacter aerogenes KCTC 2190   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Faecalibacterium prausnitzii L2-6   1 1
No Yes Clostridium difficile BI1   1 1
No Yes Clostridium difficile R20291   1 1
No Yes Clostridium difficile CD196   1 1
No Yes Clostridium autoethanogenum DSM 10061   1 1
No Yes Clostridium saccharoperbutylacetonicum N1-4(HMT)   1 1
No Yes Clostridium kluyveri NBRC 12016   1 1
No Yes Enterococcus casseliflavus EC20   1 1
No Yes Lactobacillus paracasei subsp. paracasei 8700:2   1 1
No Yes Lactobacillus casei LOCK919   1 1
No Yes Lactobacillus casei W56   1 1
No Yes Lactobacillus casei LC2W   1 1
No Yes Lactobacillus casei BD-II   1 1
No Yes Lactobacillus casei BL23   1 1
No Yes Lactobacillus casei str. Zhang   1 1
No Yes Lactobacillus rhamnosus LOCK908   1 1
No Yes Lactobacillus rhamnosus LOCK900   1 1
No Yes Lactobacillus rhamnosus ATCC 8530   1 1
No Yes Lactobacillus rhamnosus GG   2 2
No Yes Lactobacillus rhamnosus GG   2 2
No Yes Lactobacillus salivarius UCC118   1 1
No Yes Lactobacillus plantarum ZJ316   1 1
No Yes Lactobacillus plantarum WCFS1   1 1
No Yes Listeria monocytogenes EGD sequence   1 1
No Yes Listeria monocytogenes N53-1   1 1
No Yes Listeria monocytogenes La111   1 1
No Yes Listeria monocytogenes serotype 4b str. LL195   1 1
No Yes Listeria monocytogenes 07PF0776   1 1
No Yes Listeria monocytogenes M7   1 1
No Yes Listeria monocytogenes J1-220   1 1
No Yes Listeria monocytogenes J1816   1 1
No Yes Listeria monocytogenes SLCC2376   1 1
No Yes Listeria monocytogenes SLCC5850   1 1
No Yes Listeria monocytogenes ATCC 19117   1 1
No Yes Listeria monocytogenes L312   1 1
No Yes Listeria monocytogenes SLCC2479   1 1
No Yes Listeria monocytogenes SLCC7179   1 1
No Yes Listeria monocytogenes SLCC2540   1 1
No Yes Listeria monocytogenes SLCC2378   1 1
No Yes Listeria monocytogenes serotype 1/2b str. SLCC2755   1 1
No Yes Listeria monocytogenes serotype 1/2c str. SLCC2372   1 1
No Yes Listeria monocytogenes serotype 7 str. SLCC2482   1 1
No Yes Listeria monocytogenes 08-5578   1 1
No Yes Listeria monocytogenes 08-5923   1 1
No Yes Listeria monocytogenes L99   1 1
No Yes Listeria monocytogenes HCC23   1 1
No Yes Listeria monocytogenes 10403S   1 1
No Yes Listeria monocytogenes J0161   1 1
No Yes Listeria monocytogenes Finland 1998   1 1
No Yes Listeria monocytogenes FSL R2-561   1 1
No Yes Listeria monocytogenes serotype 4b str. F2365   1 1
No Yes Listeria monocytogenes EGD-e   1 1
No Yes Geobacillus sp. Y4.1MC1   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum sequencing   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5033   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum AS43.3   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5113   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum UCMB5036   1 1
No Yes Bacillus amyloliquefaciens subsp. plantarum CAU B946   1 1
No Yes Bacillus amyloliquefaciens LFB112   1 1
No Yes Bacillus amyloliquefaciens CC178   1 1
No Yes Bacillus amyloliquefaciens Y2   1 1
No Yes Bacillus amyloliquefaciens IT-45   1 1
No Yes Bacillus amyloliquefaciens XH7   1 1
No Yes Bacillus amyloliquefaciens LL3   1 1
No Yes Bacillus amyloliquefaciens TA208   1 1
No Yes Bacillus amyloliquefaciens DSM 7   1 1
No Yes Bacillus licheniformis 9945A   1 1
No Yes Bacillus subtilis PY79   1 1
No Yes Bacillus subtilis XF-1   1 1
No Yes Bacillus subtilis QB928   1 1
No Yes Bacillus subtilis BSn5   1 1
No Yes Bacillus subtilis subsp. subtilis str. BAB-1   1 1
No Yes Bacillus subtilis subsp. subtilis str. BSP1   1 1
No Yes Bacillus subtilis subsp. subtilis str. RO-NN-1   1 1
No Yes Bacillus subtilis subsp. subtilis 6051-HGW   1 1
No Yes Bacillus subtilis subsp. spizizenii TU-B-10   1 1
No Yes Bacillus subtilis subsp. spizizenii str. W23   1 1
No Yes Bacillus subtilis subsp. natto BEST195   1 1
No Yes Bacillus licheniformis DSM 13 = ATCC 14580   1 1
No Yes Bacillus megaterium QM B1551   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Burkholderia lata   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Vibrio sp. EJY3   1 1
No Yes Serratia sp. AS13   1 1
No Yes Serratia plymuthica S13   1 1
No Yes Serratia plymuthica 4Rx13   1 1
No Yes Serratia marcescens FGI94   2 2
No Yes Serratia marcescens WW4   1 1
No Yes Serratia liquefaciens ATCC 27592   1 1
No Yes Pantoea ananatis LMG 5342   1 1
No Yes Pantoea ananatis PA13   1 1
No Yes Pantoea ananatis AJ13355   1 1
No Yes Cronobacter sakazakii SP291   1 1
No Yes Raoultella ornithinolytica B6   1 1
No Yes Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736   2 2
No Yes Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. U288   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 798   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. T000240   2 2
No Yes Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   2 2
No Yes Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104   2 2
No Yes Salmonella enterica serovar Bovismorbificans genomics   2 2
No Yes Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189   2 2
No Yes Salmonella enterica subsp. enterica serovar Agona str. 24249   2 2
No Yes Salmonella enterica subsp. enterica serovar Agona str. SL483   2 2
No Yes Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1   2 2
No Yes Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7   2 2
No Yes Salmonella enterica subsp. enterica serovar Thompson str. RM6836   2 2
No Yes Klebsiella oxytoca KCTC 1686   1 1
No Yes Klebsiella pneumoniae JM45   1 1
No Yes Klebsiella pneumoniae CG43   1 1
No Yes Klebsiella pneumoniae KCTC 2242   1 1
No Yes Klebsiella pneumoniae 342   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae 1084   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae HS11286   1 1
No Yes Klebsiella pneumoniae subsp. pneumoniae MGH 78578   1 1
No Yes Klebsiella pneumoniae subsp. rhinoscleromatis SB3432   1 1
No Yes Enterobacter aerogenes EA1509E   1 1
No Yes Escherichia coli ED1a   1 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Atta cephalotes fungus garden (ACEF) (meta-genome)   4 4
No Yes Combined (meta-genome)   9 9
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   9 9
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   6 6
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   5 5
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   5 5
No Yes Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Human Gut Community Subject 8 (meta-genome)   3 3
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   14790 14790
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   1 1
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)   2 2
No Yes STRING v9.0.5 (STRING)   70 70
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   1750 1750
No Yes Global Ocean Sampling Expedition (GOS)   13 13
No Yes NCBI plasmid sequences (Plasmids)   23 23
No Yes PDB chains (SCOP 1.75) (PDB)   3 3
No Yes Protein Data Bank (all PDB sequenc)   10 10
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   30 30
No Yes TargetDB (Targets)   4 4
No Yes The Salmonella enterica Pan-genome (meta-genome)   24 24

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]