SUPERFAMILY 1.75 HMM library and genome assignments server

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Filamin repeat (rod domain) family domain assignments


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Select to display   Genome       Domains   Proteins
No Yes ALL   57393 57393
No Yes Homo sapiens 76_38 Human 205 16
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 30 2
No Yes Gorilla gorilla 76_3.1 Western gorilla 80 6
No Yes Pongo abelii 76_2 Sumatran orangutan 74 5
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 44 4
No Yes Papio anubis 76 Olive baboon 77 6
No Yes Macaca mulatta 76_1 Rhesus monkey 138 13
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 120 10
No Yes Otolemur garnettii 76_3 Small-eared galago 47 4
No Yes Microcebus murinus 76_1 Gray mouse lemur 46 3
No Yes Rattus norvegicus 76_5.0 Norway rat 58 4
No Yes Mus musculus 76_38 House mouse 131 10
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 42 3
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 47 3
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 47 3
No Yes Cavia porcellus 76_3 Domestic guinea pig 45 3
No Yes Oryctolagus cuniculus 76_2 Rabbit 55 4
No Yes Ochotona princeps 76 American pika 36 3
No Yes Tupaia belangeri 76 Northern tree shrew 31 3
No Yes Sus scrofa 76_10.2 Pig 23 2
No Yes Bos taurus 76_3.1 Cattle 46 3
No Yes Ovis aries 76_3.1 Sheep 44 3
No Yes Vicugna pacos 76_1 Alpaca 14 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 36 3
No Yes Mustela putorius furo 76_1.0 Domestic ferret 45 3
No Yes Ailuropoda melanoleuca 76_1 Giant panda 45 3
No Yes Canis familiaris 76_3.1 Dog 60 4
No Yes Felis catus 76_6.2 Domestic cat 60 4
No Yes Equus caballus 76_2 Horse 64 4
No Yes Myotis lucifugus 76_2.0 Little brown bat 46 3
No Yes Pteropus vampyrus 76_1 Large flying fox 39 3
No Yes Sorex araneus 76_1 European shrew 25 2
No Yes Erinaceus europaeus 76 Western European hedgehog 42 3
No Yes Procavia capensis 76_1 Cape rock hyrax 38 3
No Yes Loxodonta africana 76_3 African savanna elephant 77 6
No Yes Echinops telfairi 76 Small Madagascar hedgehog 31 3
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 60 4
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 10 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 41 3
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 47 3
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 45 3
No Yes Ornithorhynchus anatinus 76_5 Platypus 45 4
No Yes Saccoglossus kowalevskii v3.0   10 2
No Yes Petromyzon marinus 76_7.0 Sea lamprey 28 6
No Yes Meleagris gallopavo 76_2 Turkey 29 2
No Yes Gallus gallus 76_4 Chicken 15 1
No Yes Anas platyrhynchos 76_1.0 Mallard 9 3
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 29 2
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 31 2
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 34 3
No Yes Anolis carolinensis 76_2.0 Green anole 39 3
No Yes Xenopus laevis African clawed frog 9 5
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 45 3
No Yes Latimeria chalumnae 76_1 Coelacanth 58 4
No Yes Lepisosteus oculatus 76 Spotted gar 104 7
No Yes Gadus morhua 76_1 Atlantic cod 49 5
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 113 9
No Yes Takifugu rubripes 76_4 Torafugu 222 15
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 81 7
No Yes Oryzias latipes 76_1 Japanese medaka 60 4
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 53 4
No Yes Poecilia formosa 76 Amazon molly 59 4
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 87 6
No Yes Astyanax mexicanus 76 Mexican tetra 55 8
No Yes Danio rerio 76_9 Zebrafish 87 8
No Yes Oikopleura dioica   8 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 79 9
No Yes Ciona intestinalis 76 Vase tunicate 8 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 14 2
No Yes Adineta vaga   22 4
No Yes Octopus bimaculoides 280   21 7
No Yes Crassostrea gigas 22 Pacific oyster 7 1
No Yes Lottia gigantea Owl limpet 6 2
No Yes Helobdella robusta   18 3
No Yes Capitella sp. I   8 3
No Yes Danaus plexippus OGS1.0 Monarch butterfly 6 1
No Yes Heliconius melpomene Postman butterfly 5 1
No Yes Bombyx mori Domestic silkworm 3 2
No Yes Nasonia vitripennis Jewel wasp 7 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 56 8
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 7 1
No Yes Linepithema humile v1.1 Argentine ant 6 2
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 6 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 7 1
No Yes Atta cephalotes v1.1   8 3
No Yes Camponotus floridanus v3.3 Florida carpenter ant 7 1
No Yes Lucilia cuprina Australian sheep blowfly 7 2
No Yes Drosophila grimshawi 1.3   7 2
No Yes Drosophila willistoni 1.3   7 2
No Yes Drosophila pseudoobscura 2.13   8 2
No Yes Drosophila persimilis 1.3   6 2
No Yes Drosophila suzukii   12 4
No Yes Drosophila yakuba 1.3   8 2
No Yes Drosophila simulans 1.3   8 2
No Yes Drosophila sechellia 1.3   8 2
No Yes Drosophila melanogaster 76_5 Fruit fly 46 9
No Yes Drosophila erecta 1.3   8 2
No Yes Drosophila ananassae 1.3   8 2
No Yes Drosophila virilis 1.2   7 2
No Yes Drosophila mojavensis 1.3   7 2
No Yes Megaselia scalaris 22   4 2
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 4 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 7 2
No Yes Anopheles darlingi 22 American malaria mosquito 5 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 7 1
No Yes Tribolium castaneum 3.0 Red flour beetle 6 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 8 2
No Yes Acyrthosiphon pisum Pea aphid 5 2
No Yes Daphnia pulex Common water flea 9 3
No Yes Strigamia maritima 22   9 2
No Yes Sarcoptes scabiei   3 1
No Yes Tetranychus urticae Two-spotted spider mite 8 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 5 1
No Yes Pristionchus pacificus   1 1
No Yes Caenorhabditis brenneri   1 1
No Yes Caenorhabditis briggsae 2   1 1
No Yes Trichinella spiralis 22   3 3
No Yes Hymenolepis microstoma   7 2
No Yes Echinococcus multilocularis   8 2
No Yes Echinococcus granulosus   7 2
No Yes Taenia solium Pork tapeworm 3 2
No Yes Schistosoma mansoni   10 2
No Yes Acropora digitifera v1.0   4 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 6 1
No Yes Hydra vulgaris   3 1
No Yes Trichoplax adhaerens   2 1
No Yes Dictyostelium discoideum   3 1
No Yes Dictyostelium purpureum   3 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 92 8
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 34 7
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 17 3
No Yes Ascaris suum Victoria/Ghent Pig roundworm 1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 295 23
No Yes Homo sapiens (NCBI version) Human 123 8
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 47 3
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 1 1
No Yes Homo sapiens 69_37 Human 47 3
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 30 2
No Yes Gorilla gorilla 69_3.1 Western gorilla 50 4
No Yes Pongo abelii 69_2 Sumatran orangutan 46 3
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 41 4
No Yes Macaca mulatta 69_1 Rhesus monkey 46 4
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 38 4
No Yes Otolemur garnettii 69_3 Small-eared galago 47 4
No Yes Microcebus murinus 69_1 Gray mouse lemur 46 3
No Yes Rattus norvegicus 69_3.4 Norway rat 48 3
No Yes Mus musculus 69_38 House mouse 47 3
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 42 3
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 47 3
No Yes Cavia porcellus 69_3 Domestic guinea pig 45 3
No Yes Oryctolagus cuniculus 69_2 Rabbit 55 4
No Yes Ochotona princeps 69 American pika 36 3
No Yes Tupaia belangeri 69 Northern tree shrew 31 3
No Yes Sus scrofa 69_10.2 Pig 23 2
No Yes Bos taurus 69_3.1 Cattle 46 3
No Yes Vicugna pacos 69_1 Alpaca 14 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 36 3
No Yes Mustela putorius furo 69_1.0 Domestic ferret 45 3
No Yes Ailuropoda melanoleuca 69_1 Giant panda 45 3
No Yes Canis familiaris 69_3.1 Dog 45 3
No Yes Felis catus 69 Domestic cat 42 3
No Yes Equus caballus 69_2 Horse 48 3
No Yes Myotis lucifugus 69_2.0 Little brown bat 46 3
No Yes Pteropus vampyrus 69_1 Large flying fox 39 3
No Yes Sorex araneus 69_1 European shrew 25 2
No Yes Erinaceus europaeus 69 Western European hedgehog 42 3
No Yes Procavia capensis 69_1 Cape rock hyrax 38 3
No Yes Loxodonta africana 69_3 African savanna elephant 45 3
No Yes Echinops telfairi 69 Small Madagascar hedgehog 31 3
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 29 2
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 10 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 41 3
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 47 3
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 45 3
No Yes Ornithorhynchus anatinus 69_5 Platypus 45 4
No Yes Petromyzon marinus 69_7.0 Sea lamprey 14 4
No Yes Meleagris gallopavo 69_2 Turkey 15 1
No Yes Gallus gallus 69_2 Chicken 15 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 29 2
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 18 2
No Yes Anolis carolinensis 69_2.0 Green anole 39 3
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 45 3
No Yes Latimeria chalumnae 69_1 Coelacanth 43 3
No Yes Gadus morhua 69_1 Atlantic cod 49 5
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 58 5
No Yes Takifugu rubripes 69_4 Torafugu 71 5
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 53 5
No Yes Oryzias latipes 69_1 Japanese medaka 60 4
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 53 4
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 59 4
No Yes Danio rerio 69_9 Zebrafish 46 4
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 8 1
No Yes Ciona intestinalis 69 Vase tunicate 8 1
No Yes Drosophila melanogaster 69_5 Fruit fly 8 2
No Yes NCBI 2017_08 genome   30054 2600
No Yes STRING v9.0.5 (STRING)   1282 115
No Yes Uniprot 2018_03 genome   14608 1722
No Yes PDB chains (SCOP 1.75) (PDB)   30 25
No Yes Protein Data Bank (all PDB sequenc)   39 32
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   193 193
No Yes TargetDB (Targets)   191 41

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