SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


DNA polymerase beta-like, second domain family domain assignments
in
all genomes

Assignment details

(show help)

25 selected genomes have 77 significant domains in 77 proteins.

Showing genomes 1 to 25 of 95
  1 2 3 4   Next Last

Homo sapiens 76_38 has 11 significant domains in 11 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSP00000265421   1.19e-16   0.0000934   92-147   1bpy A:92-148  
ENSP00000299206   1.41e-17   0.0000777   330-384   1rzt A:329-385  
ENSP00000343102   5.23e-18   0.0000777   53-107   1rzt A:329-385  
ENSP00000359181   1.41e-17   0.0000777   330-384   1rzt A:329-385  
ENSP00000359188   1.41e-17   0.0000777   330-384   1rzt A:329-385  
ENSP00000359191   1.11e-17   0.0000777   242-296   1rzt A:329-385  
ENSP00000360216   3.27e-18   0.000042   243-301   1jms A:243-302  
ENSP00000400676   1.05e-17   0.0000777   238-292   1rzt A:329-385  
ENSP00000406791   2.94e-18   0.0000777   53-107   1rzt A:329-385  
ENSP00000429436   4.58e-17   0.0000934   92-147   1bpy A:92-148  
ENSP00000429597   6.7e-17   0.0000496   23-78   1bpy A:92-148  
 
Weak hits:
ENSP00000242248   6.54e-18   0.00041   231-288   1jms A:243-302  
ENSP00000335141   0.000000000000126   0.00064   232-278   1jms A:243-302  
ENSP00000359187   0.000000149   0.0013   26-57   1rzt A:329-385  
ENSP00000395043   1.96e-18   0.00041   141-198   1jms A:243-302  
ENSP00000430784   0.00000000275   0.00027   92-128,163-183   1bpy A:92-148  
ENSP00000432084   0.00000392   0.00081   9-33   1bpy A:92-148  

Pan troglodytes 76_2.1.4 has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSPTRP00000004885   3.27e-18   0.000042   243-301   1jms A:243-302  
ENSPTRP00000034604   1.19e-16   0.0000934   92-147   1bpy A:92-148  
ENSPTRP00000040462   2.62e-17   0.0000836   330-384   1rzt A:329-385  
 
Weak hits:
ENSPTRP00000032685   6.54e-18   0.00041   231-288   1jms A:243-302  

Gorilla gorilla 76_3.1 has 4 significant domains in 4 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSGGOP00000001020   3.27e-18   0.000042   243-301   1jms A:243-302  
ENSGGOP00000004928   2.45e-17   0.0000836   330-384   1rzt A:329-385  
ENSGGOP00000009031   1.11e-16   0.0000934   75-130   1bpy A:92-148  
ENSGGOP00000027997   1.11e-16   0.0000934   75-130   1bpy A:92-148  
 
Weak hits:
ENSGGOP00000026396   6.54e-18   0.00041   231-288   1jms A:243-302  

Pongo abelii 76_2 has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSPPYP00000002922   1.11e-17   0.0000466   243-301   1jms A:243-302  
ENSPPYP00000003004   1.37e-17   0.0000777   323-377   1rzt A:329-385  
ENSPPYP00000020805   1.21e-16   0.0000934   92-147   1bpy A:92-148  
 
Weak hits:
ENSPPYP00000019724   0.000000000000196   0.00068   232-278   1jms A:243-302  

Nomascus leucogenys 76_1.0 has 4 significant domains in 4 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSNLEP00000015641   1.19e-16   0.0000934   92-147   1bpy A:92-148  
ENSNLEP00000016213   5.07e-18   0.0000392   243-301   1jms A:243-302  
ENSNLEP00000018097   1.47e-17   0.0000821   329-383   1rzt A:329-385  
ENSNLEP00000024075   1.47e-17   0.0000821   329-383   1rzt A:329-385  

Papio anubis 76 has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSPANP00000006223   1.21e-16   0.0000934   92-147   1bpy A:92-148  
ENSPANP00000020717   5.56e-18   0.0000474   243-301   1jms A:243-302  
ENSPANP00000020892   8.34e-18   0.0000883   330-384   1rzt A:329-385  
 
Weak hits:
ENSPANP00000009812   1.37e-17   0.00046   231-288   1jms A:243-302  

Macaca mulatta 76_1 has 6 significant domains in 6 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSMMUP00000008876   8.67e-18   0.0000821   330-384   1rzt A:329-385  
ENSMMUP00000008877   3.27e-18   0.0000821   53-107   1rzt A:329-385  
ENSMMUP00000008879   7.36e-18   0.0000821   330-384   1rzt A:329-385  
ENSMMUP00000027366   1.21e-16   0.0000934   92-147   1bpy A:92-148  
ENSMMUP00000029592   5.56e-18   0.0000474   243-301   1jms A:243-302  
ENSMMUP00000032124   1.05e-16   0.0000934   92-147   1bpy A:92-148  

Callithrix jacchus 76_3.2.1 has 5 significant domains in 5 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSCJAP00000014753   1.21e-16   0.0000934   92-147   1bpy A:92-148  
ENSCJAP00000030097   6.05e-18   0.00005   243-301   1jms A:243-302  
ENSCJAP00000032443   2.62e-17   0.0000951   330-384   1rzt A:329-385  
ENSCJAP00000049952   6.21e-18   0.0000951   53-107   1rzt A:329-385  
ENSCJAP00000051009   8.01e-18   0.0000951   22-76   1rzt A:329-385  
 
Weak hits:
ENSCJAP00000025361   0.00018   0.0025   230-255   1jms A:243-302  

Otolemur garnettii 76_3 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSOGAP00000013496   2.94e-18   0.000042   243-301   1jms A:243-302  
ENSOGAP00000014463   3.76e-17   0.0000662   92-147   1jn3 A:91-148  
 
Weak hits:
ENSOGAP00000006010   3.11e-18   0.0004   231-288   1jms A:243-302  
ENSOGAP00000010773   8.99e-17   0.00011   326-380   1rzt A:329-385  

Microcebus murinus 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSMICP00000009775   5.23e-18   0.0000518   243-300   1jms A:243-302  
 
Weak hits:
ENSMICP00000006017   0.0000000000262   0.00021   59-97   1jn3 A:91-148  
ENSMICP00000006710   2.78e-17   0.00012   329-383   1rzt A:329-385  
ENSMICP00000012205   1.34e-17   0.00047   228-285   1jms A:243-302  

Rattus norvegicus 76_5.0 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSRNOP00000026039   1.28e-16   0.0000638   92-147   1jn3 A:91-148  
ENSRNOP00000051355   1.11e-18   0.0000353   243-301   1jms A:243-302  
 
Weak hits:
ENSRNOP00000018320   7.36e-18   0.00038   232-288   1jms A:243-302  
ENSRNOP00000023137   1.96e-17   0.00014   328-382   1rzt A:329-385  

Mus musculus 76_38 has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSMUSP00000033938   3.76e-17   0.0000662   92-147   1jn3 A:91-148  
ENSMUSP00000062078   3.11e-18   0.0000303   243-301   1jms A:243-302  
ENSMUSP00000107819   2.94e-18   0.0000303   243-301   1jms A:243-302  
 
Weak hits:
ENSMUSP00000020767   1.23e-18   0.00033   231-288   1jms A:243-302  
ENSMUSP00000026239   8.5e-17   0.00015   328-382   1rzt A:329-385  
ENSMUSP00000105463   1.28e-18   0.00033   231-288   1jms A:243-302  

Dipodomys ordii 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSDORP00000007550   3.43e-18   0.0000483   243-300   1jms A:243-302  
 
Weak hits:
ENSDORP00000002277   0.0000000000262   0.0002   109-147   1jn3 A:91-148  
ENSDORP00000013356   0.00000196   0.0025   352-382   1rzt A:329-385  

Ictidomys tridecemlineatus 76_2 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSSTOP00000005240   4.91e-17   0.0000711   92-147   1jn3 A:91-148  
ENSSTOP00000011414   5.56e-19   0.0000435   80-138   1jms A:243-302  
 
Weak hits:
ENSSTOP00000002384   1.64e-17   0.00055   239-293   1jms A:243-302  
ENSSTOP00000010303   3.11e-17   0.00013   330-384   1rzt A:329-385  

Heterocephalus glaber v1.7-2 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
HGL_H00000265421   4.91e-17   0.0000793   92-147   1jn3 A:91-148  
HGL_H00000360216   1.55e-17   0.0000474   242-300   1jms A:243-302  
 
Weak hits:
HGL_H00000299206   1.46e-17   0.00011   327-381   1rzt A:329-385  
HGL_H00000379174   1.44e-17   0.00049   230-287   1jms A:243-302  

Cavia porcellus 76_3 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSCPOP00000002155   8.18e-18   0.0000435   245-303   1jms A:243-302  
ENSCPOP00000009487   4.91e-17   0.0000711   92-147   1jn3 A:91-148  
 
Weak hits:
ENSCPOP00000004947   2.94e-17   0.00015   330-384   1rzt A:329-385  
ENSCPOP00000013323   9.32e-17   0.00052   229-286   1jms A:243-302  

Oryctolagus cuniculus 76_2 has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSOCUP00000001117   4.91e-17   0.0000711   92-147   1jn3 A:91-148  
ENSOCUP00000002494   1.8e-18   0.0000607   225-283   1jms A:243-302  
ENSOCUP00000013197   6.87e-18   0.0000836   347-401   1rzt A:329-385  
 
Weak hits:
ENSOCUP00000020115   3.76e-17   0.00053   234-290   1jms A:243-302  
ENSOCUP00000026484   3.11e-17   0.00053   172-228   1jms A:243-302  

Ochotona princeps 76 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSOPRP00000006555   1.47e-17   0.0001   329-383   1rzt A:329-385  
ENSOPRP00000011121   4.91e-17   0.0000711   92-147   1jn3 A:91-148  
 
Weak hits:
ENSOPRP00000007168   0.00000000000000572   0.00011   249-301   1jms A:243-302  

Tupaia belangeri 76 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSTBEP00000004028   8.01e-18   0.0000491   243-301   1jms A:243-302  
 
Weak hits:
ENSTBEP00000002325   4.41e-17   0.00011   328-382   1rzt A:329-385  
ENSTBEP00000005382   0.00000164   0.00052   32-85   1jn3 A:91-148  

Sus scrofa 76_10.2 has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSSSCP00000007493   2.78e-17   0.0000779   92-147   1jn3 A:91-148  
ENSSSCP00000011193   1.18e-17   0.0000491   243-301   1jms A:243-302  
ENSSSCP00000029906   5.72e-18   0.0000491   52-110   1jms A:243-302  
 
Weak hits:
ENSSSCP00000011254   1.11e-17   0.00012   330-384   1rzt A:329-385  
ENSSSCP00000017745   1.59e-18   0.00045   227-283   1jms A:243-302  

Bos taurus 76_3.1 has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSBTAP00000000276   4.91e-17   0.0000711   92-147   1jn3 A:91-148  
ENSBTAP00000027223   1.29e-17   0.0000474   243-301   1jms A:243-302  
ENSBTAP00000051460   1.34e-17   0.0000474   254-312   1jms A:243-302  
 
Weak hits:
ENSBTAP00000004653   1.41e-17   0.00011   330-384   1rzt A:329-385  
ENSBTAP00000010260   1.64e-17   0.00038   212-268   1jms A:243-302  

Ovis aries 76_3.1 has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSOARP00000003533   4.41e-17   0.0000711   73-128   1jn3 A:91-148  
ENSOARP00000008125   9.16e-18   0.00005   246-304   1jms A:243-302  
 
Weak hits:
ENSOARP00000017778   7.03e-17   0.00012   330-384   1rzt A:329-385  
ENSOARP00000018109   1.03e-17   0.00036   227-283   1jms A:243-302  

Vicugna pacos 76_1 has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSVPAP00000002881   1.06e-17   0.0001   327-381   1rzt A:329-385  
ENSVPAP00000004540   4.74e-18   0.0000466   243-301   1jms A:243-302  
ENSVPAP00000010359   4.91e-17   0.0000854   92-147   1jn3 A:91-148  

Tursiops truncatus 76_1 has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSTTRP00000009128   4.91e-17   0.0000711   92-147   1jn3 A:91-148  
ENSTTRP00000014143   1.1e-17   0.0001   330-384   1rzt A:329-385  
ENSTTRP00000015102   7.03e-18   0.0000466   243-301   1jms A:243-302  

Mustela putorius furo 76_1.0 has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSMPUP00000012614   4.91e-17   0.0000711   92-147   1jn3 A:91-148  
ENSMPUP00000016816   3.43e-18   0.0000987   350-404   1rzt A:329-385  
ENSMPUP00000016976   1.6e-17   0.0000556   246-304   1jms A:243-302  
 
Weak hits:
ENSMPUP00000018094   2.62e-16   0.00039   162-216   1jms A:243-302  

  1 2 3 4   Next Last
Showing genomes 1 to 25 of 95

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a DNA polymerase beta-like, second domain domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   2869 2869
No Yes Homo sapiens 76_38 Human 11 11
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 3 3
No Yes Gorilla gorilla 76_3.1 Western gorilla 4 4
No Yes Pongo abelii 76_2 Sumatran orangutan 3 3
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 4 4
No Yes Papio anubis 76 Olive baboon 3 3
No Yes Macaca mulatta 76_1 Rhesus monkey 6 6
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 5 5
No Yes Otolemur garnettii 76_3 Small-eared galago 2 2
No Yes Microcebus murinus 76_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 2 2
No Yes Mus musculus 76_38 House mouse 3 3
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 2 2
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 2 2
No Yes Cavia porcellus 76_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 76_2 Rabbit 3 3
No Yes Ochotona princeps 76 American pika 2 2
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 3 3
No Yes Bos taurus 76_3.1 Cattle 3 3
No Yes Ovis aries 76_3.1 Sheep 2 2
No Yes Vicugna pacos 76_1 Alpaca 3 3
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 3 3
No Yes Mustela putorius furo 76_1.0 Domestic ferret 3 3
No Yes Ailuropoda melanoleuca 76_1 Giant panda 3 3
No Yes Canis familiaris 76_3.1 Dog 2 2
No Yes Felis catus 76_6.2 Domestic cat 4 4
No Yes Equus caballus 76_2 Horse 3 3
No Yes Myotis lucifugus 76_2.0 Little brown bat 3 3
No Yes Pteropus vampyrus 76_1 Large flying fox 2 2
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 1 1
No Yes Procavia capensis 76_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 4 4
No Yes Echinops telfairi 76 Small Madagascar hedgehog 2 2
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 4 4
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 3 3
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 2 2
No Yes Meleagris gallopavo 76_2 Turkey 2 2
No Yes Gallus gallus 76_4 Chicken 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1 1
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 1 1
No Yes Xenopus laevis African clawed frog 4 4
No Yes Homo sapiens 75_37 (old version GRC) Human 14 14
No Yes Homo sapiens (NCBI version) Human 6 6
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 2 2
No Yes Homo sapiens 69_37 Human 3 3
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 3 3
No Yes Gorilla gorilla 69_3.1 Western gorilla 4 4
No Yes Pongo abelii 69_2 Sumatran orangutan 3 3
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 3 3
No Yes Macaca mulatta 69_1 Rhesus monkey 3 3
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 3 3
No Yes Otolemur garnettii 69_3 Small-eared galago 2 2
No Yes Microcebus murinus 69_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 69_3.4 Norway rat 2 2
No Yes Mus musculus 69_38 House mouse 2 2
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 2 2
No Yes Cavia porcellus 69_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 69_2 Rabbit 3 3
No Yes Ochotona princeps 69 American pika 2 2
No Yes Tupaia belangeri 69 Northern tree shrew 1 1
No Yes Sus scrofa 69_10.2 Pig 2 2
No Yes Bos taurus 69_3.1 Cattle 2 2
No Yes Vicugna pacos 69_1 Alpaca 3 3
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 3 3
No Yes Mustela putorius furo 69_1.0 Domestic ferret 3 3
No Yes Ailuropoda melanoleuca 69_1 Giant panda 3 3
No Yes Canis familiaris 69_3.1 Dog 2 2
No Yes Felis catus 69 Domestic cat 2 2
No Yes Equus caballus 69_2 Horse 3 3
No Yes Myotis lucifugus 69_2.0 Little brown bat 3 3
No Yes Pteropus vampyrus 69_1 Large flying fox 2 2
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 1 1
No Yes Procavia capensis 69_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 3 3
No Yes Echinops telfairi 69 Small Madagascar hedgehog 2 2
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 3 3
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 2 2
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 2 2
No Yes Meleagris gallopavo 69_2 Turkey 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 1 1
No Yes NCBI 2017_08 genome   709 709
No Yes STRING v9.0.5 (STRING)   38 38
No Yes Uniprot 2018_03 genome   285 285
No Yes PDB chains (SCOP 1.75) (PDB)   14 14
No Yes Protein Data Bank (all PDB sequenc)   502 502
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   983 983
No Yes TargetDB (Targets)   2 2

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]