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  Home > Genomes > a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) domains in all genomes


a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) family domain assignments
in
all genomes

Assignment details

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25 selected genomes have 25 significant domains in 25 proteins.

Showing genomes 1 to 25 of 585
  1 2 3 4 5 6 7 8 9 10 11   Next Last

Homo sapiens 76_38 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSP00000354554   5.89e-48   0.00000156   261-379   1be3 C:261-379  
 
Weak hits:
ENSP00000205636   0.0161   0.0081   80-158   1ezv C:262-385  
ENSP00000322181   0.00507   0.011   17-72   1bcc C:262-380  
ENSP00000362202   0.00425   0.011   18-71   1bcc C:262-380  
ENSP00000368700   0.0654   0.014   35-86   1ezv C:262-385  
ENSP00000441365   0.0414   0.0082   31-85   1bcc C:262-380  

Pan troglodytes 76_2.1.4 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSPTRP00000061405   2.4e-48   0.00000152   261-379   1be3 C:261-379  
 
Weak hits:
ENSPTRP00000004939   0.0414   0.0082   31-85   1bcc C:262-380  
ENSPTRP00000025388   0.0327   0.0084   79-158   1ezv C:262-385  
ENSPTRP00000036589   0.0036   0.011   18-71   1bcc C:262-380  
ENSPTRP00000059907   0.00621   0.011   17-72   1bcc C:262-380  

Gorilla gorilla 76_3.1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSGGOP00000022734   1.83e-48   0.00000154   261-379   1be3 C:261-379  
 
Weak hits:
ENSGGOP00000012314   0.024   0.0087   80-159   1ezv C:262-385  
ENSGGOP00000014328   0.00425   0.011   18-71   1bcc C:262-380  
ENSGGOP00000019452   0.00621   0.011   17-72   1bcc C:262-380  
ENSGGOP00000027902   0.0314   0.0082   30-84   1bcc C:262-380  

Pongo abelii 76_2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSPPYP00000023451   2.4e-47   0.00000229   261-379   1be3 C:261-379  
 
Weak hits:
ENSPPYP00000022008   0.018   0.011   17-71   1bcc C:262-380  

Papio anubis 76 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSPANP00000000013   3.71e-46   0.00000213   261-379   1be3 C:261-379  
 
Weak hits:
ENSPANP00000012296   0.0371   0.0081   79-158   1ezv C:262-385  
ENSPANP00000019365   0.00441   0.011   17-72   1bcc C:262-380  
ENSPANP00000020796   0.0249   0.0082   30-84   1bcc C:262-380  

Macaca mulatta 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSMMUP00000031372   1.44e-46   0.00000213   261-379   1be3 C:261-379  
 
Weak hits:
ENSMMUP00000018880   0.00425   0.011   16-71   1bcc C:262-380  
ENSMMUP00000018881   0.00899   0.011   17-68   1bcc C:262-380  
ENSMMUP00000026179   0.0414   0.0082   31-85   1bcc C:262-380  
ENSMMUP00000039832   0.0687   0.014   4-55   1ezv C:262-385  

Rattus norvegicus 76_5.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSRNOP00000047954   1.4e-51   0.00000154   261-380   1be3 C:261-379  
 
Weak hits:
ENSRNOP00000065111   0.00785   0.01   16-71   1bcc C:262-380  

Mus musculus 76_38 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSMUSP00000081003   5.45e-51   0.0000015   261-378   1be3 C:261-379  
 
Weak hits:
ENSMUSP00000028151   0.00572   0.01   17-72   1bcc C:262-380  
ENSMUSP00000035007   0.0196   0.011   81-158   1ezv C:262-385  
ENSMUSP00000124665   0.00621   0.0082   18-69   1bcc C:262-380  

Cavia porcellus 76_3 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSCPOP00000014220   1.5e-50   0.00000112   261-379   1be3 C:261-379  
 
Weak hits:
ENSCPOP00000014512   0.0177   0.013   16-71   1bcc C:262-380  

Oryctolagus cuniculus 76_2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSOCUP00000026191   3.71e-51   0.000000931   261-379   1be3 C:261-379  
 
Weak hits:
ENSOCUP00000000662   0.0183   0.01   80-157   1bcc C:262-380  
ENSOCUP00000023843   0.00131   0.011   17-72   1bcc C:262-380  

Ochotona princeps 76 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSOPRP00000016383   7.85e-51   0.000000859   261-379   1be3 C:261-379  
 
Weak hits:
ENSOPRP00000014934   0.000497   0.0092   17-76   1bcc C:262-380  

Tupaia belangeri 76 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSTBEP00000015476   1.61e-52   0.00000101   261-379   1be3 C:261-379  
 
Weak hits:
ENSTBEP00000008633   0.00371   0.013   34-112   1ezv C:262-385  

Sus scrofa 76_10.2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSSSCP00000019147   4.88e-111   0.00000585   203-344   1be3 C:261-379  
 
Weak hits:
ENSSSCP00000006034   0.00801   0.011   18-72   1bcc C:262-380  
ENSSSCP00000028478   0.0218   0.014   21-67   1bcc C:262-380  

Bos taurus 76_3.1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSBTAP00000053148   8.79e-110   0.0000038   203-344   1be3 C:261-379  
 
Weak hits:
ENSBTAP00000004393   0.00981   0.011   17-72   1bcc C:262-380  
ENSBTAP00000017923   0.0785   0.009   31-85   1be3 C:261-379  

Ovis aries 76_3.1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSOARP00000000013   2.18e-51   0.000000771   261-379   1be3 C:261-379  
 
Weak hits:
ENSOARP00000011938   0.00768   0.011   17-72   1bcc C:262-380  
ENSOARP00000016224   0.00501   0.0065   33-112   1ezv C:262-385  

Vicugna pacos 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSVPAP00000011821   1.37e-49   0.000000657   261-379   1be3 C:261-379  

Tursiops truncatus 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSTTRP00000016626   5.67e-50   0.000000983   261-379   1be3 C:261-379  
 
Weak hits:
ENSTTRP00000003303   0.0654   0.0069   80-157   1bcc C:262-380  
ENSTTRP00000015614   0.00278   0.009   18-70   1bcc C:262-380  

Ailuropoda melanoleuca 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSAMEP00000021365   2.18e-49   0.00000108   261-378   1be3 C:261-379  
 
Weak hits:
ENSAMEP00000014142   0.085   0.011   28-101   1ezv C:262-385  
ENSAMEP00000016013   0.0121   0.011   18-72   1bcc C:262-380  
ENSAMEP00000020150   0.00000024   0.0013   1-33   1be3 C:261-379  

Canis familiaris 76_3.1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSCAFP00000030321   4.8e-51   0.000000693   261-379   1be3 C:261-379  
 
Weak hits:
ENSCAFP00000029785   0.00719   0.011   17-67   1bcc C:262-380  
ENSCAFP00000039693   0.00425   0.012   145-213   2e74 B:1-160  

Felis catus 76_6.2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSFCAP00000025721   6.1e-51   0.000000731   261-379   1be3 C:261-379  
 
Weak hits:
ENSFCAP00000007329   0.00872   0.011   33-111   1bcc C:262-380  
ENSFCAP00000016945   0.00491   0.011   17-72   1bcc C:262-380  

Equus caballus 76_2 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSECAP00000023113   1.59e-50   0.000000836   261-379   1be3 C:261-379  
 
Weak hits:
ENSECAP00000005108   0.00392   0.011   17-67   1bcc C:262-380  
ENSECAP00000013003   0.0501   0.012   35-111   1bcc C:262-380  
ENSECAP00000019253   0.0068   0.011   17-71   1bcc C:262-380  
ENSECAP00000022864   0.024   0.013   3-74   1bcc C:262-380  

Erinaceus europaeus 76 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSEEUP00000014606   3.27e-50   0.00000156   261-379   1be3 C:261-379  
 
Weak hits:
ENSEEUP00000012120   0.0113   0.011   18-68   1bcc C:262-380  

Procavia capensis 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSPCAP00000016144   1.7e-52   0.000000931   261-378   1be3 C:261-379  
 
Weak hits:
ENSPCAP00000006530   0.0371   0.013   80-160   1bcc C:262-380  

Loxodonta africana 76_3 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSLAFP00000029503   3.05e-48   0.00000213   261-377   1be3 C:261-379  
 
Weak hits:
ENSLAFP00000010547   0.0414   0.011   80-162   1bcc C:262-380  
ENSLAFP00000019982   0.0349   0.011   71-153   1bcc C:262-380  
ENSLAFP00000027848   0.018   0.014   17-69   1bcc C:262-380  

Echinops telfairi 76 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSETEP00000016595   2.4e-49   0.00000125   261-379   1be3 C:261-379  
 
Weak hits:
ENSETEP00000004867   0.00262   0.0083   79-157   1bcc C:262-380  

  1 2 3 4 5 6 7 8 9 10 11   Next Last
Showing genomes 1 to 25 of 585

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Select to display   Genome       Domains   Proteins
No Yes ALL   131135 131135
No Yes Homo sapiens 76_38 Human 1 1
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 1 1
No Yes Pongo abelii 76_2 Sumatran orangutan 1 1
No Yes Papio anubis 76 Olive baboon 1 1
No Yes Macaca mulatta 76_1 Rhesus monkey 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 1 1
No Yes Mus musculus 76_38 House mouse 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 76_2 Rabbit 1 1
No Yes Ochotona princeps 76 American pika 1 1
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 1 1
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 1 1
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 1 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 1 1
No Yes Canis familiaris 76_3.1 Dog 1 1
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Equus caballus 76_2 Horse 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 1 1
No Yes Procavia capensis 76_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 1 1
No Yes Echinops telfairi 76 Small Madagascar hedgehog 1 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 1 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 1 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 1 1
No Yes Ornithorhynchus anatinus 76_5 Platypus 1 1
No Yes Petromyzon marinus 76_7.0 Sea lamprey 1 1
No Yes Meleagris gallopavo 76_2 Turkey 1 1
No Yes Gallus gallus 76_4 Chicken 1 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 1 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 1 1
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 1 1
No Yes Anolis carolinensis 76_2.0 Green anole 1 1
No Yes Xenopus laevis African clawed frog 5 5
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 1 1
No Yes Latimeria chalumnae 76_1 Coelacanth 1 1
No Yes Lepisosteus oculatus 76 Spotted gar 1 1
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 76_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 1 1
No Yes Oryzias latipes 76_1 Japanese medaka 1 1
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 1 1
No Yes Danio rerio 76_9 Zebrafish 1 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 1 1
No Yes Ciona intestinalis 76 Vase tunicate 1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Drosophila melanogaster 76_5 Fruit fly 1 1
No Yes Sarcoptes scabiei   1 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 1 1
No Yes Hydra vulgaris   1 1
No Yes Sporisorium reilianum 22   1 1
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Scleroderma citrinum Foug A v1.0   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Podospora anserina   1 1
No Yes Glomerella graminicola 22   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Didymella exigua CBS 183.55 v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   1 1
No Yes Candida guilliermondii ATCC 6260   1 1
No Yes Vanderwaltozyma polyspora DSM 70294   1 1
No Yes Ashbya gossypii ATCC 10895   1 1
No Yes Saccharomyces mikatae MIT   1 1
No Yes Saccharomyces cerevisiae 76 Baker's yeast 1 1
No Yes Schizosaccharomyces pombe Fission yeast 1 1
No Yes Catenaria anguillulae PL171 v1.0   1 1
No Yes Dictyostelium discoideum   1 1
No Yes Selaginella moellendorffii   1 1
No Yes Eucalyptus grandis v201 Rose gum 1 1
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   4 4
No Yes Citrus clementina v165   1 1
No Yes Thellungiella halophila v173   1 1
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 2 2
No Yes Arabidopsis thaliana 10 Thale cress 3 3
No Yes Medicago truncatula Barrel medic 2 2
No Yes Glycine max v109 Soybean 2 2
No Yes Cucumis sativus v122 Cucumber 2 2
No Yes Solanum lycopersicum v.2.3 Tomato 4 4
No Yes Triticum urartu 22   5 5
No Yes Triticum aestivum 22 Bread wheat 64 64
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Oryza glaberrima African rice 7 7
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 4 4
No Yes Oryza sativa v193 Rice 4 4
No Yes Panicum virgatum v202 Switchgrass 1 1
No Yes Setaria italica v164 Foxtail millet 2 2
No Yes Zea mays subsp. mays Maize 5 5
No Yes Zea mays v181 Maize 7 7
No Yes Sorghum bicolor Sorghum 2 2
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   2 2
No Yes Chlorella vulgaris   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Ostreococcus sp. RCC809   1 1
No Yes Ostreococcus lucimarinus CCE9901   1 1
No Yes Ostreococcus tauri   1 1
No Yes Bathycoccus prasinos   3 3
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Cyanidioschyzon merolae strain 10D 22   2 2
No Yes Cyanidioschyzon merolae   2 2
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Leptolyngbya sp. PCC 7376   1 1
No Yes Pseudanabaena sp. PCC 7367   1 1
No Yes Acaryochloris marina MBIC11017   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Thermosynechococcus sp. NK55   1 1
No Yes Thermosynechococcus elongatus BP-1   1 1
No Yes Synechococcus sp. PCC 7502   1 1
No Yes Synechococcus sp. PCC 6312   1 1
No Yes Synechococcus sp. CC9311   1 1
No Yes Synechococcus elongatus PCC 7942   1 1
No Yes Prochlorococcus marinus str. MIT 9515   1 1
No Yes Microcoleus sp. PCC 7113   1 1
No Yes Trichodesmium erythraeum IMS101   1 1
No Yes Geitlerinema sp. PCC 7407   1 1
No Yes Cyanothece sp. PCC 8802   1 1
No Yes Gloeocapsa sp. PCC 7428   1 1
No Yes cyanobacterium UCYN-A   1 1
No Yes Halothece sp. PCC 7418   1 1
No Yes Microcystis aeruginosa NIES-843   1 1
No Yes Gloeobacter violaceus PCC 7421   1 1
No Yes Rivularia sp. PCC 7116   1 1
No Yes Calothrix sp. PCC 7507   1 1
No Yes Anabaena variabilis ATCC 29413   1 1
No Yes 'Nostoc azollae' 0708   1 1
No Yes Nostoc sp. PCC 7107   1 1
No Yes Nostoc punctiforme PCC 73102   1 1
No Yes Nostoc sp. PCC 7120   1 1
No Yes Nostoc sp. PCC 7524   1 1
No Yes Anabaena sp. 90   1 1
No Yes Magnetococcus marinus MC-1   1 1
No Yes Parvularcula bermudensis HTCC2503   1 1
No Yes Asticcacaulis excentricus CB 48   1 1
No Yes Brevundimonas subvibrioides ATCC 15264   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Caulobacter crescentus NA1000   1 1
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Phenylobacterium zucineum HLK1   1 1
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   1 1
No Yes Sphingobium sp. SYK-6   1 1
No Yes Sphingobium japonicum UT26S   1 1
No Yes Sphingobium chlorophenolicum L-1   1 1
No Yes Sphingomonas sp. MM-1   1 1
No Yes Sphingomonas wittichii RW1   1 1
No Yes Zymomonas mobilis subsp. mobilis NCIMB 11163   1 1
No Yes Maricaulis maris MCS10   1 1
No Yes Dinoroseobacter shibae DFL 12   1 1
No Yes Phaeobacter gallaeciensis 2.10   1 1
No Yes Pseudovibrio sp. FO-BEG1   1 1
No Yes Jannaschia sp. CCS1   1 1
No Yes Ruegeria sp. TM1040   1 1
No Yes Ruegeria pomeroyi DSS-3   1 1
No Yes Roseobacter litoralis Och 149   1 1
No Yes Roseobacter denitrificans OCh 114   1 1
No Yes Rhodobacter sphaeroides ATCC 17029   1 1
No Yes Rhodobacter capsulatus SB 1003   1 1
No Yes Paracoccus denitrificans PD1222   1 1
No Yes Rhodospirillum photometricum DSM 122   1 1
No Yes Tistrella mobilis KA081020-065   1 1
No Yes Magnetospirillum magneticum AMB-1   1 1
No Yes Rhodospirillum centenum SW   1 1
No Yes Rhodospirillum rubrum F11   1 1
No Yes Azospirillum lipoferum 4B   1 1
No Yes Azospirillum sp. B510   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Polymorphum gilvum SL003B-26A1   1 1
No Yes Micavibrio aeruginosavorus ARL-13   1 1
No Yes Candidatus Puniceispirillum marinum IMCC1322   1 1
No Yes alpha proteobacterium HIMB5   1 1
No Yes alpha proteobacterium HIMB59   1 1
No Yes Candidatus Pelagibacter sp. IMCC9063   1 1
No Yes Candidatus Midichloria mitochondrii IricVA   1 1
No Yes Neorickettsia sennetsu str. Miyayama   1 1
No Yes Neorickettsia risticii str. Illinois   1 1
No Yes Wolbachia endosymbiont of Culex quinquefasciatus Pel   1 1
No Yes Wolbachia sp. wRi   1 1
No Yes Ehrlichia chaffeensis str. Arkansas   1 1
No Yes Ehrlichia canis str. Jake   1 1
No Yes Ehrlichia ruminantium str. Gardel   1 1
No Yes Anaplasma phagocytophilum HZ   1 1
No Yes Anaplasma marginale str. Florida   1 1
No Yes Anaplasma centrale str. Israel   1 1
No Yes Orientia tsutsugamushi str. Boryong   1 1
No Yes Rickettsia bellii OSU 85-389   1 1
No Yes Rickettsia canadensis str. McKiel   1 1
No Yes Rickettsia typhi str. Wilmington   1 1
No Yes Rickettsia prowazekii str. BuV67-CWPP   1 1
No Yes Rickettsia philipii str. 364D   1 1
No Yes Rickettsia heilongjiangensis 054   1 1
No Yes Rickettsia peacockii str. Rustic   1 1
No Yes Rickettsia felis URRWXCal2   1 1
No Yes Rickettsia slovaca 13-B   1 1
No Yes Rickettsia parkeri str. Portsmouth   1 1
No Yes Rickettsia massiliae MTU5   1 1
No Yes Rickettsia japonica YH   1 1
No Yes Rickettsia africae ESF-5   1 1
No Yes Rickettsia rhipicephali str. 3-7-female6-CWPP   1 1
No Yes Rickettsia montanensis str. OSU 85-930   1 1
No Yes Candidatus Rickettsia amblyommii str. GAT-30V   1 1
No Yes Rickettsia australis str. Cutlack   1 1
No Yes Rickettsia akari str. Hartford   1 1
No Yes Rickettsia rickettsii str. 'Sheila Smith'   1 1
No Yes Rickettsia conorii str. Malish 7   1 1
No Yes Starkeya novella DSM 506   1 1
No Yes Xanthobacter autotrophicus Py2   1 1
No Yes Azorhizobium caulinodans ORS 571   1 1
No Yes Methylobacterium chloromethanicum CM4   1 1
No Yes Methylobacterium extorquens AM1   1 1
No Yes Methylobacterium sp. 4-46   1 1
No Yes Methylobacterium populi BJ001   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Methylobacterium radiotolerans JCM 2831   1 1
No Yes Parvibaculum lavamentivorans DS-1   1 1
No Yes Ochrobactrum anthropi ATCC 49188   1 1
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   1 1
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella suis ATCC 23445   1 1
No Yes Brucella melitensis ATCC 23457   1 1
No Yes Brucella ovis ATCC 25840   1 1
No Yes Brucella abortus S19   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Sinorhizobium meliloti AK83   1 1
No Yes Genome sequence of Rhizobium sp. strain IRBG74   1 1
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   1 1
No Yes Agrobacterium tumefaciens str. C58   1 1
No Yes Agrobacterium radiobacter K84   1 1
No Yes Agrobacterium sp. H13-3   1 1
No Yes Agrobacterium vitis S4   1 1
No Yes Mesorhizobium sp. BNC1   1 1
No Yes Mesorhizobium opportunistum WSM2075   2 2
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   1 1
No Yes Mesorhizobium loti MAFF303099   2 2
No Yes Methylocella silvestris BL2   1 1
No Yes Beijerinckia indica subsp. indica ATCC 9039   1 1
No Yes Pelagibacterium halotolerans B2   2 2
No Yes Rhodomicrobium vannielii ATCC 17100   1 1
No Yes Hyphomicrobium sp. MC1   1 1
No Yes Hyphomicrobium denitrificans ATCC 51888   1 1
No Yes Oligotropha carboxidovorans OM4   1 1
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Nitrobacter winogradskyi Nb-255   1 1
No Yes Nitrobacter hamburgensis X14   1 1
No Yes Bradyrhizobium japonicum USDA 110   1 1
No Yes Bradyrhizobium sp. ORS 278   1 1
No Yes Methylocystis sp. SC2   1 1
No Yes Vibrio fischeri MJ11   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Idiomarina loihiensis L2TR   1 1
No Yes Glaciecola nitratireducens FR1064   1 1
No Yes Alteromonas macleodii str. 'Deep ecotype'   1 1
No Yes Alkalilimnicola ehrlichii MLHE-1   1 1
No Yes Allochromatium vinosum DSM 180   1 1
No Yes Thiocystis violascens DSM 198   1 1
No Yes Nitrosococcus halophilus Nc4   1 1
No Yes Legionella longbeachae NSW150   1 1
No Yes Legionella pneumophila str. Corby   1 1
No Yes gamma proteobacterium HdN1   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   1 1
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas entomophila L48   1 1
No Yes Pseudomonas stutzeri A1501   1 1
No Yes Pseudomonas fulva 12-X   1 1
No Yes Pseudomonas putida F1   1 1
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Pseudomonas sp. VLB120   1 1
No Yes Psychrobacter sp. G   1 1
No Yes Psychrobacter arcticus 273-4   1 1
No Yes Psychrobacter cryohalolentis K5   1 1
No Yes Methylophaga sp. JAM1   1 1
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 2 2
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 2 2
No Yes Chroococcidiopsis thermalis PCC 7203   1 1
No Yes Chamaesiphon minutus PCC 6605   2 2
No Yes Synechocystis sp. PCC 6803 substr. PCC-P   1 1
No Yes Synechocystis sp. PCC 6803 substr. PCC-N   1 1
No Yes Synechocystis sp. PCC 6803 substr. GT-I   1 1
No Yes Synechocystis sp. PCC 6803   1 1
No Yes Cyanobium gracile PCC 6307   1 1
No Yes Dactylococcopsis salina PCC 8305   1 1
No Yes Synechococcus sp. JA-2-3B'a(2-13)   1 1
No Yes Synechococcus sp. JA-3-3Ab   1 1
No Yes Synechococcus sp. CC9902   1 1
No Yes Synechococcus sp. RCC307   1 1
No Yes Synechococcus sp. CC9605   1 1
No Yes Synechococcus sp. WH 8102   1 1
No Yes Synechococcus sp. WH 7803   1 1
No Yes Synechococcus sp. PCC 7002   1 1
No Yes Synechococcus elongatus PCC 6301   1 1
No Yes Prochlorococcus marinus str. NATL1A   1 1
No Yes Prochlorococcus marinus str. MIT 9301   1 1
No Yes Prochlorococcus marinus str. AS9601   1 1
No Yes Prochlorococcus marinus subsp. marinus str. CCMP1375   1 1
No Yes Prochlorococcus marinus subsp. pastoris str. CCMP1986   1 1
No Yes Prochlorococcus marinus str. MIT 9215   1 1
No Yes Prochlorococcus marinus str. MIT 9211   1 1
No Yes Prochlorococcus marinus str. MIT 9313   1 1
No Yes Prochlorococcus marinus str. MIT 9312   1 1
No Yes Prochlorococcus marinus str. MIT 9303   1 1
No Yes Prochlorococcus marinus str. NATL2A   1 1
No Yes Crinalium epipsammum PCC 9333   1 1
No Yes Oscillatoria nigro-viridis PCC 7112   1 1
No Yes Oscillatoria acuminata PCC 6304   1 1
No Yes Arthrospira platensis NIES-39   1 1
No Yes Cyanothece sp. PCC 7822   1 1
No Yes Cyanothece sp. PCC 7425   1 1
No Yes Cyanothece sp. PCC 7424   1 1
No Yes Cyanothece sp. ATCC 51142   1 1
No Yes Cyanothece sp. PCC 8801   1 1
No Yes Cyanobacterium aponinum PCC 10605   1 1
No Yes Cyanobacterium stanieri PCC 7202   1 1
No Yes Gloeobacter kilaueensis Gloeobacter sp. JS   1 1
No Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327   1 1
No Yes Stanieria cyanosphaera PCC 7437   1 1
No Yes Calothrix parietina Calothrix sp. PCC 6303   1 1
No Yes Cylindrospermum stagnale PCC 7417   1 1
No Yes Anabaena cylindrica PCC 7122   1 1
No Yes Caulobacter crescentus CB15   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 29191   1 1
No Yes Zymomonas mobilis subsp. mobilis CP4   1 1
No Yes Zymomonas mobilis subsp. mobilis ATCC 10988   1 1
No Yes Zymomonas mobilis subsp. mobilis ZM4   1 1
No Yes Zymomonas mobilis subsp. pomaceae ATCC 29192   1 1
No Yes Phaeobacter gallaeciensis DSM 17395   1 1
No Yes Phaeobacter gallaeciensis DSM 26640   1 1
No Yes Leisingera methylohalidivorans DSM 14336   1 1
No Yes Octadecabacter antarcticus 307   1 1
No Yes Octadecabacter arcticus 238   1 1
No Yes Rhodobacter sphaeroides KD131   1 1
No Yes Rhodobacter sphaeroides ATCC 17025   1 1
No Yes Rhodobacter sphaeroides 2.4.1   1 1
No Yes Paracoccus aminophilus JCM 7686   1 1
No Yes Candidatus Endolissoclinum faulkneri L2   1 1
No Yes Rhodospirillum rubrum ATCC 11170   1 1
No Yes Gluconacetobacter diazotrophicus PAl 5   1 1
No Yes Micavibrio aeruginosavorus EPB   1 1
No Yes Candidatus Pelagibacter ubique HTCC1062   1 1
No Yes Wolbachia endosymbiont of Drosophila melanogaster   1 1
No Yes Wolbachia endosymbiont of Onchocerca ochengi str. Adamawa_Cameroon   1 1
No Yes Wolbachia endosymbiont strain TRS of Brugia malayi   1 1
No Yes Wolbachia endosymbiont of Drosophila simulans wHa   1 1
No Yes Wolbachia endosymbiont of Drosophila simulans wNo   1 1
No Yes Ehrlichia muris AS145   1 1
No Yes Ehrlichia ruminantium str. Welgevonden   1 1
No Yes Ehrlichia ruminantium str. Welgevonden   1 1
No Yes Anaplasma phagocytophilum str. Dog2   1 1
No Yes Anaplasma phagocytophilum str. HZ2   1 1
No Yes Anaplasma phagocytophilum str. JM   1 1
No Yes Anaplasma marginale str. Gypsy Plains   1 1
No Yes Anaplasma marginale str. St. Maries   1 1
No Yes Orientia tsutsugamushi str. Ikeda   1 1
No Yes Rickettsia bellii RML369-C   1 1
No Yes Rickettsia canadensis str. CA410   1 1
No Yes Rickettsia typhi str. B9991CWPP   1 1
No Yes Rickettsia typhi str. TH1527   1 1
No Yes Rickettsia prowazekii str. Breinl   1 1
No Yes Rickettsia prowazekii str. NMRC Madrid E   1 1
No Yes Rickettsia prowazekii str. RpGvF24   1 1
No Yes Rickettsia prowazekii str. GvV257   1 1
No Yes Rickettsia prowazekii str. Dachau   1 1
No Yes Rickettsia prowazekii str. Katsinyian   1 1
No Yes Rickettsia prowazekii str. Chernikova   1 1
No Yes Rickettsia prowazekii Rp22   1 1
No Yes Rickettsia prowazekii str. Madrid E   1 1
No Yes Rickettsia slovaca str. D-CWPP   1 1
No Yes Rickettsia massiliae str. AZT80   1 1
No Yes Rickettsia rickettsii str. Arizona   1 1
No Yes Rickettsia rickettsii str. Brazil   1 1
No Yes Rickettsia rickettsii str. Hauke   1 1
No Yes Rickettsia rickettsii str. Colombia   1 1
No Yes Rickettsia rickettsii str. Hlp#2   1 1
No Yes Rickettsia rickettsii str. Hino   1 1
No Yes Rickettsia rickettsii str. Iowa   1 1
No Yes Methylobacterium extorquens DM4   1 1
No Yes Methylobacterium extorquens PA1   1 1
No Yes Brucella ceti TE10759-12   1 1
No Yes Brucella ceti TE28753-12   1 1
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis NI   1 1
No Yes Brucella melitensis M5-90   1 1
No Yes Brucella melitensis M28   1 1
No Yes Brucella melitensis bv. 1 str. 16M   1 1
No Yes Brucella abortus A13334   1 1
No Yes Brucella melitensis biovar Abortus 2308   1 1
No Yes Brucella abortus bv. 1 str. 9-941   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   1 1
No Yes Sinorhizobium meliloti BL225C   1 1
No Yes Sinorhizobium meliloti 1021   1 1
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   1 1
No Yes Mesorhizobium australicum WSM2073   1 1
No Yes Hyphomicrobium nitrativorans NL23   1 1
No Yes Hyphomicrobium denitrificans 1NES1   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Oligotropha carboxidovorans OM5   1 1
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris TIE-1   1 1
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB5   1 1
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris CGA009   1 1
No Yes Bradyrhizobium sp. S23321   1 1
No Yes Bradyrhizobium sp. BTAi1   1 1
No Yes Bradyrhizobium oligotrophicum S58   1 1
No Yes Bradyrhizobium japonicum USDA 6   1 1
No Yes Vibrio fischeri ES114   1 1
No Yes Vibrio sp. EJY3   1 1
No Yes Vibrio nigripulchritudo VibrioScope   1 1
No Yes Vibrio cholerae LMA3984-4   1 1
No Yes Vibrio cholerae M66-2   1 1
No Yes Vibrio cholerae O395   1 1
No Yes Vibrio cholerae IEC224   1 1
No Yes Vibrio cholerae O1 str. 2010EL-1786   1 1
No Yes Vibrio cholerae MJ-1236   1 1
No Yes Vibrio cholerae O1 biovar El Tor str. N16961   1 1
No Yes Idiomarina loihiensis GSL 199   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM4b'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea UM7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U8'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U7'   1 1
No Yes Alteromonas macleodii str. 'Ionian Sea U4'   1 1
No Yes Alteromonas macleodii str. 'Aegean Sea MED64'   1 1
No Yes Alteromonas macleodii str. 'English Channel 615'   1 1
No Yes Alteromonas macleodii AltDE1   1 1
No Yes Thalassolituus oleivorans MIL-1   1 1
No Yes Thioflavicoccus mobilis 8321   1 1
No Yes Legionella pneumophila str. Paris   1 1
No Yes Legionella pneumophila str. Lens   1 1
No Yes Legionella pneumophila subsp. pneumophila LPE509   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay   1 1
No Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila   1 1
No Yes Legionella pneumophila subsp. pneumophila ATCC 43290   1 1
No Yes Legionella pneumophila 2300/99 Alcoy   1 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Pseudomonas stutzeri RCH2   1 1
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   1 1
No Yes Pseudomonas monteilii SB3101   1 1
No Yes Pseudomonas monteilii SB3078   1 1
No Yes Pseudomonas putida H8234   1 1
No Yes Pseudomonas putida HB3267   1 1
No Yes Pseudomonas putida NBRC 14164   1 1
No Yes Pseudomonas putida DOT-T1E   1 1
No Yes Pseudomonas putida S16   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas putida ND6   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas fluorescens Pf0-1   1 1
No Yes Pseudomonas resinovorans NBRC 106553   1 1
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   1 1
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Methylophaga sp. JAM7   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 1 1
No Yes Homo sapiens (NCBI version) Human 1 1
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 1 1
No Yes Heliconius numata (Incomplete)   1 1
No Yes Lotus japonicus (Early assembly)   7 7
No Yes Ricinus communis (Early assembly) Castor bean 2 2
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 3
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 4 4
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 4 4
No Yes Guillardia theta (nucleomorph)   1 1
No Yes Wolbachia endosymbiont of Brugia malayi v1.0 (Broad Institute)   1 1
No Yes Homo sapiens 69_37 Human 1 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Pongo abelii 69_2 Sumatran orangutan 1 1
No Yes Macaca mulatta 69_1 Rhesus monkey 1 1
No Yes Rattus norvegicus 69_3.4 Norway rat 1 1
No Yes Mus musculus 69_38 House mouse 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 1 1
No Yes Sus scrofa 69_10.2 Pig 1 1
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 1 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 1 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 1 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 1 1
No Yes Ornithorhynchus anatinus 69_5 Platypus 1 1
No Yes Meleagris gallopavo 69_2 Turkey 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 1 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 1 1
No Yes Anolis carolinensis 69_2.0 Green anole 1 1
No Yes Latimeria chalumnae 69_1 Coelacanth 1 1
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 1 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 1 1
No Yes Danio rerio 69_9 Zebrafish 1 1
No Yes Drosophila melanogaster 69_5 Fruit fly 1 1
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 1 1
No Yes Arabidopsis thaliana 10 Thale cress 3 3
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 2_Base_of_chrolophyll_max (meta-genome)   2 2
No Yes 4_050719Q (meta-genome)   3 3
No Yes 5_050719P (meta-genome)   2 2
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   2 2
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   1 1
No Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)   2 2
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   4 4
No Yes Dump top (Dump top) (meta-genome)   3 3
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 01(G) (meta-genome)   1 1
No Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   2 2
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   2 2
No Yes NCBI 2017_08 genome   8934 8934
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   1 1
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   3 3
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   2 2
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   4 4
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   1 1
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   3 3
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   4 4
No Yes STRING v9.0.5 (STRING)   233 233
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   2 2
No Yes Uniprot 2018_03 genome   119254 119252
No Yes Global Ocean Sampling Expedition (GOS)   1044 1044
No Yes NCBI plasmid sequences (Plasmids)   3 3
No Yes PDB chains (SCOP 1.75) (PDB)   8 8
No Yes Protein Data Bank (all PDB sequenc)   113 113
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   327 327
No Yes TargetDB (Targets)   1 1

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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