SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


MMLV matrix protein-like family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1mn8A   7.65e-46   0.00000092   2-100   1mn8 A:  
1uhuA   6.04e-44   0.000000771   3-101   1uhu A:  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a MMLV matrix protein-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   1122 1122
No Yes Sus scrofa 76_10.2 Pig 10 10
No Yes Felis catus 76_6.2 Domestic cat 37 37
No Yes Trypanosoma congolense 2.4   3 3
No Yes Sus scrofa 69_10.2 Pig 10 10
No Yes NCBI 2017_08 genome   362 362
No Yes Uniprot 2018_03 genome   518 518
No Yes NCBI viral sequences (Viral)   16 16
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   5 5
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   15 15
No Yes TargetDB (Targets)   1 1
No Yes UniProt viral sequences (Viral)   128 128

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]