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MMLV matrix protein-like family domain assignments
in
all eukaryotic genomes

Assignment details

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4 selected genomes have 60 significant domains in 60 proteins.


Sus scrofa 76_10.2 has 10 significant domains in 10 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSSSCP00000019160   3.83e-43   0.00000739   1-103   1uhu A:  
ENSSSCP00000019422   1.18e-42   0.00000751   1-103   1uhu A:  
ENSSSCP00000020797   2.24e-42   0.00000751   1-103   1uhu A:  
ENSSSCP00000021008   3.35e-43   0.00000675   1-103   1uhu A:  
ENSSSCP00000021237   2.59e-42   0.00000728   1-103   1uhu A:  
ENSSSCP00000022871   1e-42   0.00000739   1-103   1uhu A:  
ENSSSCP00000024113   3.83e-43   0.00000739   1-103   1uhu A:  
ENSSSCP00000024629   6.47e-40   0.00000762   2-98   1uhu A:  
ENSSSCP00000024778   3.83e-43   0.00000739   1-103   1uhu A:  
ENSSSCP00000026419   3.35e-43   0.00000675   1-103   1uhu A:  
 
Weak hits:
ENSSSCP00000022829   1.06e-23   0.00085   4-98   1uhu A:  
ENSSSCP00000023285   8.24e-23   0.00066   4-98   1uhu A:  
ENSSSCP00000023630   1.82e-19   0.0011   9-90   1uhu A:  
ENSSSCP00000025458   8.83e-28   0.00061   4-100   1uhu A:  
ENSSSCP00000025775   1e-24   0.00068   8-100   1uhu A:  
ENSSSCP00000026948   1.41e-18   0.00084   1-63   1uhu A:  

Felis catus 76_6.2 has 37 significant domains in 37 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSFCAP00000016450   5.83e-35   0.0000632   1-101   1mn8 A:  
ENSFCAP00000016779   4.36e-35   0.0000999   1-97   1uhu A:  
ENSFCAP00000016958   7.06e-34   0.0000877   1-102   1mn8 A:  
ENSFCAP00000017184   2.35e-38   0.0000443   1-100   1uhu A:  
ENSFCAP00000017311   2.18e-38   0.0000597   1-101   1uhu A:  
ENSFCAP00000017867   1.53e-38   0.0000556   1-100   1uhu A:  
ENSFCAP00000018189   1.59e-35   0.0000621   1-100   1mn8 A:  
ENSFCAP00000018437   1.47e-41   0.0000257   1-102   1mn8 A:  
ENSFCAP00000019383   4.47e-34   0.0000874   1-101   1uhu A:  
ENSFCAP00000019472   2.83e-37   0.0000558   1-101   1mn8 A:  
ENSFCAP00000019817   8.24e-36   0.0000547   1-102   1uhu A:  
ENSFCAP00000019839   3e-30   0.0000705   1-93   1uhu A:  
ENSFCAP00000020074   3.53e-38   0.0000528   1-101   1uhu A:  
ENSFCAP00000020161   4.41e-40   0.0000275   2-99   1mn8 A:  
ENSFCAP00000020388   3.24e-29   0.000053   5-97   1uhu A:  
ENSFCAP00000020491   4.41e-34   0.000046   1-93   1mn8 A:  
ENSFCAP00000020509   9.42e-34   0.0000924   1-102   1uhu A:  
ENSFCAP00000020535   4.12e-39   0.0000279   1-103   1uhu A:  
ENSFCAP00000020595   6.47e-34   0.0000597   1-101   1uhu A:  
ENSFCAP00000020632   2.18e-41   0.0000257   1-102   1mn8 A:  
ENSFCAP00000020720   1.65e-38   0.0000597   1-101   1uhu A:  
ENSFCAP00000021118   2.41e-38   0.000063   1-100   1uhu A:  
ENSFCAP00000021500   5.53e-37   0.0000677   1-101   1uhu A:  
ENSFCAP00000022287   6.47e-37   0.0000728   1-101   1uhu A:  
ENSFCAP00000022355   4.24e-38   0.0000556   1-100   1uhu A:  
ENSFCAP00000022679   1.35e-41   0.0000245   1-102   1mn8 A:  
ENSFCAP00000024028   4.65e-35   0.0000893   1-101   1mn8 A:  
ENSFCAP00000024311   2.41e-33   0.0000874   1-101   1uhu A:  
ENSFCAP00000024438   1.12e-35   0.0000642   1-101   1uhu A:  
ENSFCAP00000024474   6.47e-37   0.0000702   1-102   1uhu A:  
ENSFCAP00000024944   2.65e-35   0.0000843   1-102   1uhu A:  
ENSFCAP00000024965   4.41e-39   0.000063   1-100   1uhu A:  
ENSFCAP00000024978   2.88e-37   0.0000547   1-100   1uhu A:  
ENSFCAP00000025281   1.06e-37   0.0000653   1-101   1uhu A:  
ENSFCAP00000025368   3.65e-40   0.0000173   1-102   1mn8 A:  
ENSFCAP00000025519   5.36e-31   0.000072   1-97   1uhu A:  
ENSFCAP00000025545   2.06e-35   0.0000653   1-102   1uhu A:  
 
Weak hits:
ENSFCAP00000017305   8.83e-22   0.00092   12-99   1uhu A:  
ENSFCAP00000017338   6.47e-18   0.00083   8-90   1uhu A:  
ENSFCAP00000017672   0.000000000000171   0.0012   2-69   1uhu A:  
ENSFCAP00000017948   4.47e-28   0.00011   1-92   1uhu A:  
ENSFCAP00000018300   1.24e-22   0.00062   2-75   1uhu A:  
ENSFCAP00000018391   2.65e-34   0.00011   1-95   1uhu A:  
ENSFCAP00000018510   4.83e-27   0.00046   11-99   1uhu A:  
ENSFCAP00000019163   1.24e-23   0.00036   1-95   1uhu A:  
ENSFCAP00000019892   2.65e-20   0.00075   8-96   1mn8 A:  
ENSFCAP00000021072   5.3e-17   0.0011   1-60   1mn8 A:  
  1.41e-16   0.0005   57-113   1uhu A:  
ENSFCAP00000021153   7.65e-19   0.00027   2-88   1uhu A:  
ENSFCAP00000021393   9.42e-25   0.00018   2-94   1uhu A:  
ENSFCAP00000021585   4.47e-16   0.0011   1-64   1uhu A:  
ENSFCAP00000021690   1.29e-20   0.00018   2-94   1uhu A:  
ENSFCAP00000021842   1.35e-24   0.0002   2-95   1uhu A:  
ENSFCAP00000022054   2.71e-23   0.00028   4-96   1uhu A:  
ENSFCAP00000022191   4.36e-30   0.00013   1-92   1mn8 A:  
ENSFCAP00000022745   0.00000000000135   0.0014   2-67   1uhu A:  
ENSFCAP00000022995   7.65e-21   0.00041   8-99   1uhu A:  
ENSFCAP00000023131   1.41e-22   0.00032   2-98   1uhu A:  
ENSFCAP00000023742   1.35e-16   0.00061   7-84   1uhu A:  
ENSFCAP00000024150   1.12e-25   0.00057   11-97   1mn8 A:  
ENSFCAP00000024240   0.00683   0.0058   1-28   1uhu A:  
ENSFCAP00000024321   5.36e-24   0.00033   5-100   1uhu A:  
ENSFCAP00000024419   5.89e-18   0.00043   1-91   1uhu A:  
ENSFCAP00000024529   2.12e-19   0.011   1-87   1uhu A:  
ENSFCAP00000025213   4.41e-18   0.00055   1-58   1uhu A:  

Trypanosoma congolense 2.4 has 3 significant domains in 3 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
psu|TcIL3000.0.30370   3.24e-39   0.0000194   1-100   1uhu A:  
psu|TcIL3000.0.47120   2.94e-42   0.0000162   58-159   1uhu A:  
psu|TcIL3000.0.60500   8.83e-41   0.000019   1-101   1uhu A:  

Sus scrofa 69_10.2 has 10 significant domains in 10 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
ENSSSCP00000019160   3.83e-43   0.00000739   1-103   1uhu A:  
ENSSSCP00000019422   1.18e-42   0.00000751   1-103   1uhu A:  
ENSSSCP00000020797   2.24e-42   0.00000751   1-103   1uhu A:  
ENSSSCP00000021008   3.35e-43   0.00000675   1-103   1uhu A:  
ENSSSCP00000021237   2.59e-42   0.00000728   1-103   1uhu A:  
ENSSSCP00000022871   1e-42   0.00000739   1-103   1uhu A:  
ENSSSCP00000024113   3.83e-43   0.00000739   1-103   1uhu A:  
ENSSSCP00000024629   6.47e-40   0.00000762   2-98   1uhu A:  
ENSSSCP00000024778   3.83e-43   0.00000739   1-103   1uhu A:  
ENSSSCP00000026419   3.35e-43   0.00000675   1-103   1uhu A:  
 
Weak hits:
ENSSSCP00000022829   1.06e-23   0.00085   4-98   1uhu A:  
ENSSSCP00000023285   8.24e-23   0.00066   4-98   1uhu A:  
ENSSSCP00000023630   1.82e-19   0.0011   9-90   1uhu A:  
ENSSSCP00000025458   8.83e-28   0.00061   4-100   1uhu A:  
ENSSSCP00000025775   1e-24   0.00068   8-100   1uhu A:  
ENSSSCP00000026948   1.41e-18   0.00084   1-63   1uhu A:  

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Select to display   Genome       Domains   Proteins
No Yes ALL   1122 1122
No Yes Sus scrofa 76_10.2 Pig 10 10
No Yes Felis catus 76_6.2 Domestic cat 37 37
No Yes Trypanosoma congolense 2.4   3 3
No Yes Sus scrofa 69_10.2 Pig 10 10
No Yes NCBI 2017_08 genome   362 362
No Yes Uniprot 2018_03 genome   518 518
No Yes NCBI viral sequences (Viral)   16 16
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   5 5
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   15 15
No Yes TargetDB (Targets)   1 1
No Yes UniProt viral sequences (Viral)   128 128

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