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RuBisCo LSMT C-terminal, substrate-binding domain family domain assignments
in
Oryza glumaepatula 22

Assignment details

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Oryza glumaepatula 22 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
OGLUM09G10350.1   6.41e-61   0.000000259   228-402   1mlv A:311-486  
 
Weak hits:
OGLUM01G43530.1   0.000811   0.018   402-486   1mlv A:311-486  
OGLUM01G50160.1   0.00126   0.028   17-187   1mlv A:311-486  
OGLUM01G50160.2   0.00126   0.028   17-187   1mlv A:311-486  
OGLUM01G50160.3   0.00126   0.028   17-187   1mlv A:311-486  
OGLUM01G50160.6   0.0115   0.028   26-130   1mlv A:311-486  
OGLUM02G31510.1   6.28e-28   0.0099   333-501   1mlv A:311-486  
OGLUM02G31510.4   6.28e-28   0.0099   333-501   1mlv A:311-486  
OGLUM02G32180.1   6.28e-28   0.008   302-313,343-478   1mlv A:311-486  
OGLUM02G32180.2   4.71e-28   0.008   244-255,285-420   1mlv A:311-486  
OGLUM02G32180.3   3.4e-28   0.008   188-199,229-364   1mlv A:311-486  
OGLUM05G29080.1   6.93e-20   0.0035   352-491   1mlv A:311-486  
OGLUM05G29080.2   1.96e-20   0.0035   134-273   1mlv A:311-486  
OGLUM05G29080.3   1.44e-20   0.0035   108-247   1mlv A:311-486  
OGLUM05G29080.4   1.44e-20   0.0035   108-247   1mlv A:311-486  
OGLUM05G29080.5   6.15e-20   0.0035   322-461   1mlv A:311-486  
OGLUM07G12940.1   0.00000144   0.011   289-394   1mlv A:311-486  
OGLUM07G12940.2   0.00000144   0.011   284-389   1mlv A:311-486  
OGLUM09G18380.1   0.0628   0.014   26-68   1mlv A:311-486  
OGLUM12G08300.1   1.7e-17   0.0088   335-452   1mlv A:311-486  
OGLUM12G08300.2   1.7e-17   0.0088   335-452   1mlv A:311-486  

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Select to display   Genome       Domains   Proteins
No Yes ALL   540 540
No Yes Selaginella moellendorffii   2 2
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 7 7
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   1 1
No Yes Citrus clementina v165   1 1
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Thellungiella halophila v173   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 1 1
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 1 1
No Yes Phaseolus vulgaris v186 French bean 2 2
No Yes Glycine max v109 Soybean 2 2
No Yes Cucumis sativus v122 Cucumber 2 2
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 1 1
No Yes Prunus persica v139 Peach 1 1
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 2 2
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 2 2
No Yes Solanum tuberosum Potato 3 3
No Yes Actinidia chinensis Hongyang   1 1
No Yes Aquilegia coerulea v195   1 1
No Yes Triticum urartu 22   1 1
No Yes Triticum aestivum 22 Bread wheat 1 1
No Yes Aegilops tauschii 22   1 1
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Oryza barthii 22 African wild rice 2 2
No Yes Oryza meridionalis 22   1 1
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1
No Yes Oryza sativa v193 Rice 1 1
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 1 1
No Yes Zea mays v181 Maize 1 1
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 2 2
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Chlorella vulgaris   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Ostreococcus sp. RCC809   1 1
No Yes Ostreococcus tauri   1 1
No Yes Bathycoccus prasinos   1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Ectocarpus siliculosus   1 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Malus x domestica (Duplicate) Apple 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes NCBI 2017_08 genome   120 120
No Yes STRING v9.0.5 (STRING)   13 13
No Yes Uniprot 2018_03 genome   168 168
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   21 21
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   63 63

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