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RuBisCo LSMT C-terminal, substrate-binding domain family domain assignments
in
all eukaryotic genomes

Assignment details

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3 selected genomes have 4 significant domains in 4 proteins.

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Solanum lycopersicum v2.3 (Early assembly) has 2 significant domains in 2 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
Solyc05g013150.2.1   2.09e-46   0.000000922   308-464   1mlv A:311-486  
Solyc05g013160.2.1   3.92e-56   0.000000217   312-485   1mlv A:311-486  
 
Weak hits:
Solyc01g005380.2.1   1.09e-23   0.01   293-304,334-466   1mlv A:311-486  
Solyc02g068050.2.1   0.000000000575   0.0099   337-422   1mlv A:311-486  
Solyc02g081920.2.1   9.81e-21   0.0063   361-504   1mlv A:311-486  
Solyc06g036670.1.1   0.000288   0.031   86-162   1mlv A:311-486  
Solyc07g045310.2.1   3.4e-24   0.014   312-500   1mlv A:311-486  

Phoenix dactylifera (Early draft) has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
PDK_20s130094237g004   1.44e-57   0.000000259   134-307   1mlv A:311-486  
 
Weak hits:
PDK_20s1319071g001   1.31e-18   0.0045   412-519   1mlv A:311-486  
PDK_20s1345771g001   0.0471   0.024   351-387   1mlv A:311-486  
PDK_20s1349691g002   0.00000000000000379   0.01   53-163   1mlv A:311-486  
PDK_20s1458071g001   1.44e-19   0.008   6-117   1mlv A:311-486  
PDK_20s1458501g003   0.034   0.023   50-102   1mlv A:311-486  
PDK_20s1483381g002   0.0196   0.017   314-364   1mlv A:311-486  
PDK_20s1674901g001   0.000523   0.023   18-85   1mlv A:311-486  
  0.00068   0.019   145-188   1mlv A:311-486  
PDK_20s1679801g001   0.0536   0.012   233-334   1mlv A:311-486  

Arabidopsis thaliana 10 has 1 significant domains in 1 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
AT1G14030.1   2.88e-57   0.00000039   305-479   1mlv A:311-486  
 
Weak hits:
AT1G01920.1   0.0116   0.026   430-559   1mlv A:311-486  
AT1G24610.1   2.09e-19   0.012   292-303,333-471   1mlv A:311-486  
AT2G44730.1   0.0445   0.013   344-369   1mlv A:311-486  
AT3G07670.1   2.75e-28   0.01   316-503   1mlv A:311-486  
AT3G24490.1   0.017   0.046   232-310   1mlv A:311-486  
AT3G55080.1   0.000196   0.019   294-456   1mlv A:311-486  
AT4G20130.1   7.85e-27   0.0029   336-480   1mlv A:311-486  
AT4G35070.1   0.0126   0.02   120-184   1mlv A:311-486  
AT5G14260.1   1.15e-40   0.0066   340-507   1mlv A:311-486  
AT5G17240.1   0.0000654   0.01   288-403   1mlv A:311-486  

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Select to display   Genome       Domains   Proteins
No Yes ALL   540 540
No Yes Selaginella moellendorffii   2 2
No Yes Picea abies Norway spruce 1 1
No Yes Eucalyptus grandis v201 Rose gum 7 7
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   1 1
No Yes Citrus clementina v165   1 1
No Yes Citrus sinensis v154 Sweet orange 2 2
No Yes Thellungiella halophila v173   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 1 1
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes Carica papaya Papaya 1 1
No Yes Medicago truncatula Barrel medic 1 1
No Yes Phaseolus vulgaris v186 French bean 2 2
No Yes Glycine max v109 Soybean 2 2
No Yes Cucumis sativus v122 Cucumber 2 2
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 1 1
No Yes Prunus persica v139 Peach 1 1
No Yes Linum usitatissimum v200 Flax 1 1
No Yes Manihot esculenta v147 Cassava 1 1
No Yes Populus trichocarpa v156 Black cottonwood 2 2
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 2 2
No Yes Solanum tuberosum Potato 3 3
No Yes Actinidia chinensis Hongyang   1 1
No Yes Aquilegia coerulea v195   1 1
No Yes Triticum urartu 22   1 1
No Yes Triticum aestivum 22 Bread wheat 1 1
No Yes Aegilops tauschii 22   1 1
No Yes Brachypodium distachyon Stiff brome 1 1
No Yes Oryza barthii 22 African wild rice 2 2
No Yes Oryza meridionalis 22   1 1
No Yes Oryza glumaepatula 22   1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   1 1
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 1 1
No Yes Oryza sativa v193 Rice 1 1
No Yes Phyllostachys heterocyclavar. pubescens Kikko-chiku 2 2
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Setaria italica v164 Foxtail millet 1 1
No Yes Zea mays subsp. mays Maize 1 1
No Yes Zea mays v181 Maize 1 1
No Yes Sorghum bicolor Sorghum 1 1
No Yes Musa balbisiana Balbis banana 2 2
No Yes Musa acuminata 22 Wild Malaysian banana 2 2
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella variabilis sp. NC64A   1 1
No Yes Chlorella vulgaris   1 1
No Yes Volvox carteri f. nagariensis   1 1
No Yes Volvox carteri v199   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Ostreococcus sp. RCC809   1 1
No Yes Ostreococcus tauri   1 1
No Yes Bathycoccus prasinos   1 1
No Yes Micromonas sp. RCC299   1 1
No Yes Micromonas pusilla CCMP1545 v3.0   1 1
No Yes Porphyridium purpureum 02_2012   1 1
No Yes Ectocarpus siliculosus   1 1
No Yes Thalassiosira pseudonana CCMP1335   1 1
No Yes Guillardia theta CCMP2712 v1.0   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Hordeum vulgare 22 Domesticated barley 1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Lotus japonicus (Early assembly)   1 1
No Yes Malus x domestica (Duplicate) Apple 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   1 1
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 2 2
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 2 2
No Yes Phoenix dactylifera (Early draft) Date palm 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes NCBI 2017_08 genome   120 120
No Yes STRING v9.0.5 (STRING)   13 13
No Yes Uniprot 2018_03 genome   168 168
No Yes Global Ocean Sampling Expedition (GOS)   1 1
No Yes PDB chains (SCOP 1.75) (PDB)   2 2
No Yes Protein Data Bank (all PDB sequenc)   21 21
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   63 63

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