Select to display Genome Domains Proteins No ALL 163886 163886 Yes Homo sapiens 76_38 Human 192 192 Yes Pan troglodytes 76_2.1.4 Chimpanzee 43 43 Yes Gorilla gorilla 76_3.1 Western gorilla 66 66 Yes Pongo abelii 76_2 Sumatran orangutan 46 46 Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 44 44 Yes Papio anubis 76 Olive baboon 48 48 Yes Macaca mulatta 76_1 Rhesus monkey 83 82 Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 110 110 Yes Otolemur garnettii 76_3 Small-eared galago 50 50 Yes Microcebus murinus 76_1 Gray mouse lemur 38 38 Yes Rattus norvegicus 76_5.0 Norway rat 53 53 Yes Mus musculus 76_38 House mouse 124 124 Yes Dipodomys ordii 76_1 Ord's kangaroo rat 40 39 Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 41 41 Yes Heterocephalus glaber v1.7-2 Naked mole-rat 44 43 Yes Cavia porcellus 76_3 Domestic guinea pig 46 46 Yes Oryctolagus cuniculus 76_2 Rabbit 51 51 Yes Ochotona princeps 76 American pika 37 37 Yes Tupaia belangeri 76 Northern tree shrew 34 33 Yes Sus scrofa 76_10.2 Pig 56 56 Yes Bos taurus 76_3.1 Cattle 52 52 Yes Ovis aries 76_3.1 Sheep 51 51 Yes Vicugna pacos 76_1 Alpaca 23 23 Yes Tursiops truncatus 76_1 Bottlenose dolphin 45 44 Yes Mustela putorius furo 76_1.0 Domestic ferret 49 49 Yes Ailuropoda melanoleuca 76_1 Giant panda 51 51 Yes Canis familiaris 76_3.1 Dog 72 72 Yes Felis catus 76_6.2 Domestic cat 50 50 Yes Equus caballus 76_2 Horse 48 48 Yes Myotis lucifugus 76_2.0 Little brown bat 47 46 Yes Pteropus vampyrus 76_1 Large flying fox 44 44 Yes Sorex araneus 76_1 European shrew 29 29 Yes Erinaceus europaeus 76 Western European hedgehog 29 28 Yes Procavia capensis 76_1 Cape rock hyrax 40 39 Yes Loxodonta africana 76_3 African savanna elephant 64 64 Yes Echinops telfairi 76 Small Madagascar hedgehog 38 34 Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 56 56 Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 26 25 Yes Macropus eugenii 76_1.0 Tammar wallaby 38 37 Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 57 57 Yes Monodelphis domestica 76_5 Gray short-tailed opossum 43 43 Yes Ornithorhynchus anatinus 76_5 Platypus 48 48 Yes Saccoglossus kowalevskii v3.0 85 85 Yes Petromyzon marinus 76_7.0 Sea lamprey 28 28 Yes Meleagris gallopavo 76_2 Turkey 41 41 Yes Gallus gallus 76_4 Chicken 49 49 Yes Anas platyrhynchos 76_1.0 Mallard 37 37 Yes Taeniopygia guttata 76_3.2.4 Zebra finch 50 50 Yes Ficedula albicollis 76_1.0 Collared flycatcher 40 40 Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 44 44 Yes Anolis carolinensis 76_2.0 Green anole 46 46 Yes Xenopus laevis African clawed frog 66 66 Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 48 48 Yes Latimeria chalumnae 76_1 Coelacanth 52 52 Yes Lepisosteus oculatus 76 Spotted gar 58 58 Yes Gadus morhua 76_1 Atlantic cod 44 44 Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 57 57 Yes Takifugu rubripes 76_4 Torafugu 131 131 Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 53 53 Yes Oryzias latipes 76_1 Japanese medaka 50 50 Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 54 54 Yes Poecilia formosa 76 Amazon molly 57 57 Yes Oreochromis niloticus 76_1.0 Nile tilapia 78 78 Yes Astyanax mexicanus 76 Mexican tetra 57 57 Yes Danio rerio 76_9 Zebrafish 111 111 Yes Oikopleura dioica 43 43 Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 31 31 Yes Ciona intestinalis 76 Vase tunicate 22 22 Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 79 77 Yes Adineta vaga 77 77 Yes Octopus bimaculoides 280 41 41 Yes Crassostrea gigas 22 Pacific oyster 48 47 Yes Lottia gigantea Owl limpet 34 34 Yes Helobdella robusta 36 36 Yes Capitella sp. I 37 37 Yes Danaus plexippus OGS1.0 Monarch butterfly 31 31 Yes Heliconius melpomene Postman butterfly 29 28 Yes Bombyx mori Domestic silkworm 30 28 Yes Nasonia vitripennis Jewel wasp 40 39 Yes Apis mellifera 38.2d (Not maintained) Honey bee 37 37 Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 29 28 Yes Linepithema humile v1.1 Argentine ant 31 31 Yes Pogonomyrmex barbatus v1.2 Red harvester ant 30 30 Yes Solenopsis invicta v.2.2.3 Red fire ant 27 26 Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 30 30 Yes Atta cephalotes v1.1 31 30 Yes Camponotus floridanus v3.3 Florida carpenter ant 30 30 Yes Lucilia cuprina Australian sheep blowfly 32 28 Yes Drosophila grimshawi 1.3 34 33 Yes Drosophila willistoni 1.3 35 34 Yes Drosophila pseudoobscura 2.13 33 32 Yes Drosophila persimilis 1.3 34 33 Yes Drosophila suzukii 38 33 Yes Drosophila yakuba 1.3 32 32 Yes Drosophila simulans 1.3 28 27 Yes Drosophila sechellia 1.3 31 31 Yes Drosophila melanogaster 76_5 Fruit fly 67 67 Yes Drosophila erecta 1.3 32 32 Yes Drosophila ananassae 1.3 35 34 Yes Drosophila virilis 1.2 34 33 Yes Drosophila mojavensis 1.3 32 32 Yes Megaselia scalaris 22 16 16 Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 40 40 Yes Culex pipiens quinquefasciatus Southern house mosquito 111 109 Yes Anopheles darlingi 22 American malaria mosquito 29 29 Yes Anopheles gambiae 49_3j African malaria mosquito 47 47 Yes Tribolium castaneum 3.0 Red flour beetle 41 39 Yes Pediculus humanus corporis Human body louse 29 29 Yes Acyrthosiphon pisum Pea aphid 31 31 Yes Rhodnius prolixus 22 21 21 Yes Daphnia pulex Common water flea 37 37 Yes Strigamia maritima 22 34 33 Yes Sarcoptes scabiei 19 19 Yes Tetranychus urticae Two-spotted spider mite 24 24 Yes Ixodes scapularis Black-legged tick 19 19 Yes Pristionchus pacificus 62 60 Yes Meloidogyne incognita Southern root-knot nematode 23 23 Yes Meloidogyne hapla 12 12 Yes Onchocerca volvulus 22 19 19 Yes Brugia malayi WS250 Agent of lymphatic filariasis 28 28 Yes Caenorhabditis japonica 25 25 Yes Caenorhabditis brenneri 102 100 Yes Caenorhabditis remanei 94 86 Yes Caenorhabditis elegans 76_235 Roundworm 47 47 Yes Caenorhabditis briggsae 2 69 67 Yes Trichinella spiralis 22 14 14 Yes Hymenolepis microstoma 32 32 Yes Echinococcus multilocularis 21 21 Yes Echinococcus granulosus 21 21 Yes Taenia solium Pork tapeworm 20 20 Yes Schistosoma mansoni 25 25 Yes Mnemiopsis leidyi Sea walnut 28 28 Yes Thelohanellus kitauei 7 7 Yes Acropora digitifera v1.0 42 38 Yes Nematostella vectensis 1.0 Starlet sea anemone 40 40 Yes Hydra vulgaris 30 30 Yes Amphimedon queenslandica 27 26 Yes Trichoplax adhaerens 18 18 Yes Proterospongia sp. ATCC 50818 23 21 Yes Monosiga brevicollis 23 22 Yes Sphaeroforma arctica JP610 42 41 Yes Capsaspora owczarzaki ATCC 30864 35 31 Yes Conidiobolus coronatus NRRL28638 v1.0 16 15 Yes Mortierella verticillata NRRL 6337 35 32 Yes Phycomyces blakesleeanus 29 28 Yes Rhizopus oryzae RA 99-880 32 31 Yes Mucor circinelloides 29 26 Yes Rhizomucor miehei CAU432 27 26 Yes Malassezia globosa CBS 7966 20 20 Yes Sporisorium reilianum 22 18 16 Yes Ustilago maydis 16 15 Yes Mixia osmundae IAM 14324 v1.0 19 19 Yes Cronartium quercuum f. sp. fusiforme G11 v1.0 22 22 Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3 30 30 Yes Melampsora laricis-populina 27 27 Yes Rhodotorula graminis WP1 v1.0 25 23 Yes Sporobolomyces roseus IAM 13481 13 13 Yes Microbotryum violaceum 22 22 20 Yes Wallemia sebi v1.0 13 13 Yes Sphaerobolus stellatus v1.0 38 38 Yes Piloderma croceum F 1598 v1.0 33 33 Yes Serpula lacrymans var. lacrymans S7.9 21 19 Yes Coniophora puteana 18 17 Yes Hydnomerulius pinastri v2.0 23 23 Yes Paxillus rubicundulus Ve08.2h10 v1.0 19 19 Yes Pisolithus microcarpus 441 v1.0 16 16 Yes Pisolithus tinctorius Marx 270 v1.0 20 20 Yes Scleroderma citrinum Foug A v1.0 18 18 Yes Coprinopsis cinerea okayama7 130 v3 28 28 Yes Pleurotus ostreatus Oyster mushroom 28 28 Yes Amanita thiersii Skay4041 v1.0 20 20 Yes Amanita muscaria Koide v1.0 Fly agaric 19 19 Yes Galerina marginata v1.0 46 46 Yes Hebeloma cylindrosporum h7 v2.0 32 32 Yes Laccaria bicolor S238N-H82 39 39 Yes Agaricus bisporus var. bisporus 23 23 Yes Schizophyllum commune 34 34 Yes Stereum hirsutum FP-91666 SS1 v1.0 30 30 Yes Heterobasidion annosum 23 23 Yes Gloeophyllum trabeum v1.0 22 20 Yes Punctularia strigosozonata v1.0 21 21 Yes Sebacina vermifera MAFF 305830 v1.0 31 31 Yes Fomitiporia mediterranea v1.0 23 23 Yes Tulasnella calospora AL13/4D v1.0 24 24 Yes Postia placenta 34 34 Yes Wolfiporia cocos MD-104 SS10 v1.0 23 23 Yes Fomitopsis pinicola v1.0 24 23 Yes Fomitopsis pinicola FP-58527 SS1 v3.0 24 23 Yes Phanerochaete chrysosporium RP-78 2.1 17 17 Yes Dichomitus squalens 23 23 Yes Trametes versicolor v1.0 24 24 Yes Tremella mesenterica Witches' butter 19 18 Yes Daldinia eschscholzii EC12 v1.0 27 27 Yes Apiospora montagnei NRRL 25634 v1.0 45 45 Yes Magnaporthe poae ATCC 64411 22 32 32 Yes Magnaporthe grisea 70-15 33 33 Yes Podospora anserina 33 32 Yes Sporotrichum thermophile ATCC 42464 26 26 Yes Thielavia terrestris NRRL 8126 27 27 Yes Chaetomium globosum CBS 148.51 33 33 Yes Neurospora tetrasperma 24 24 Yes Neurospora discreta FGSC 8579 23 23 Yes Neurospora crassa OR74A 25 25 Yes Cryphonectria parasitica Chestnut blight fungus 31 31 Yes Verticillium albo-atrum VaMs.102 22 22 Yes Verticillium dahliae VdLs.17 24 24 Yes Acremonium alcalophilum v 1.0 20 20 Yes Glomerella graminicola 22 26 26 Yes Fusarium graminearum 25 25 Yes Nectria haematococca mpVI 26 26 Yes Fusarium oxysporum f. sp. lycopersici 4286 23 23 Yes Fusarium verticillioides 7600 22 22 Yes Trichoderma asperellum CBS 433.97 v1.0 24 24 Yes Trichoderma atroviride 24 24 Yes Trichoderma citrinoviride v1.0 19 19 Yes Trichoderma reesei 1.2 20 20 Yes Trichoderma virens Gv29-8 21 21 Yes Trichoderma longibrachiatum ATCC 18648 v1.0 19 19 Yes Trichoderma harzianum CBS 226.95 v1.0 22 22 Yes Amorphotheca resinae v1.0 Creosote fungus 25 24 Yes Botrytis cinerea B05.10 26 26 Yes Sclerotinia sclerotiorum 25 25 Yes Blumeria graminis 22 14 14 Yes Didymella exigua CBS 183.55 v1.0 27 27 Yes Leptosphaeria maculans 22 26 26 Yes Setosphaeria turcica v1.0 26 26 Yes Cochliobolus miyabeanus ATCC 44560 v1.0 28 27 Yes Cochliobolus victoriae FI3 v1.0 28 28 Yes Cochliobolus carbonum 26-R-13 v1.0 29 29 Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 26 26 Yes Alternaria brassicicola 32 32 Yes Cochliobolus lunatus m118 v2.0 26 26 Yes Pyrenophora teres f. teres 22 30 30 Yes Pyrenophora tritici-repentis 30 30 Yes Stagonospora nodorum 32 32 Yes Mycosphaerella graminicola IPO323 27 27 Yes Zasmidium cellare ATCC 36951 v1.0 35 35 Yes Dothistroma septosporum 29 29 Yes Septoria musiva v1.0 27 27 Yes Mycosphaerella fijiensis CIRAD86 27 27 Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0 28 26 Yes Paracoccidioides brasiliensis Pb18 14 14 Yes Coccidioides posadasii RMSCC 3488 18 18 Yes Coccidioides immitis RS 19 19 Yes Ajellomyces dermatitidis SLH14081 17 17 Yes Histoplasma capsulatum class NAmI strain WU24 15 14 Yes Microsporum canis CBS 113480 17 17 Yes Trichophyton equinum CBS 127.97 14 14 Yes Trichophyton verrucosum HKI 0517 16 16 Yes Arthroderma benhamiae CBS 112371 16 16 Yes Trichophyton tonsurans CBS 112818 16 16 Yes Trichophyton rubrum CBS 118892 16 16 Yes Uncinocarpus reesii 1704 20 20 Yes Aspergillus zonatus v1.0 18 18 Yes Penicillium chrysogenum Wisconsin 54-1255 20 20 Yes Penicillium chrysogenum v1.0 20 20 Yes Aspergillus acidus v1.0 20 20 Yes Aspergillus fumigatus Af293 18 18 Yes Aspergillus brasiliensis v1.0 19 19 Yes Aspergillus nidulans FGSC A4 21 20 Yes Aspergillus sydowii v1.0 20 20 Yes Aspergillus versicolor v1.0 24 24 Yes Aspergillus glaucus 24 24 Yes Aspergillus carbonarius ITEM 5010 18 18 Yes Neosartorya fischeri NRRL 181 19 19 Yes Aspergillus terreus NIH2624 20 20 Yes Aspergillus tubingensis v1.0 20 20 Yes Aspergillus wentii v1.0 20 20 Yes Aspergillus oryzae RIB40 14 14 Yes Aspergillus niger 22 20 20 Yes Aspergillus niger ATCC 1015 18 18 Yes Aspergillus flavus NRRL3357 17 17 Yes Aspergillus clavatus NRRL 1 18 18 Yes Penicillium marneffei ATCC 18224 14 14 Yes Tuber melanosporum Mel28 22 13 13 Yes Tuber melanosporum Vittad Perigord truffle 18 18 Yes Hansenula polymorpha v2.0 9 9 Yes Dekkera bruxellensis CBS 2499 v2.0 11 10 Yes Pichia membranifaciens v1.0 10 9 Yes Candida tanzawaensis NRRL Y-17324 v1.0 11 10 Yes Candida dubliniensis CD36 12 11 Yes Candida tropicalis MYA-3404 12 11 Yes Candida parapsilosis 12 10 Yes Candida albicans SC5314 12 11 Yes Lodderomyces elongisporus NRRL YB-4239 10 9 Yes Babjeviella inositovora NRRL Y-12698 v1.0 12 11 Yes Pichia stipitis CBS 6054 12 11 Yes Candida guilliermondii ATCC 6260 13 11 Yes Hyphopichia burtonii NRRL Y-1933 v1.0 13 12 Yes Debaromyces hansenii 14 13 Yes Wickerhamomyces anomalus 14 13 Yes Pichia pastoris GS115 12 11 Yes Hanseniaspora valbyensis NRRL Y-1626 v1.1 7 6 Yes Yarrowia lipolytica CLIB122 15 14 Yes Candida lusitaniae ATCC 42720 11 10 Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0 11 10 Yes Vanderwaltozyma polyspora DSM 70294 12 11 Yes Candida glabrata CBS138 13 12 Yes Kluyveromyces thermotolerans CBS 6340 12 11 Yes Lachancea kluyveri 11 10 Yes Kluyveromyces waltii 11 10 Yes Ashbya gossypii ATCC 10895 12 11 Yes Zygosaccharomyces rouxii 12 11 Yes Saccharomyces mikatae MIT 12 11 Yes Saccharomyces paradoxus MIT 13 12 Yes Saccharomyces cerevisiae 76 Baker's yeast 14 12 Yes Saccharomyces bayanus MIT 15 13 Yes Kluyveromyces lactis 12 11 Yes Schizosaccharomyces cryophilus OY26 22 13 13 Yes Schizosaccharomyces octosporus yFS286 13 13 Yes Schizosaccharomyces japonicus yFS275 13 13 Yes Schizosaccharomyces pombe Fission yeast 13 13 Yes Catenaria anguillulae PL171 v1.0 28 28 Yes Allomyces macrogynus ATCC 38327 42 42 Yes Spizellomyces punctatus DAOM BR117 30 29 Yes Dictyostelium discoideum 33 32 Yes Dictyostelium purpureum 27 26 Yes Entamoeba dispar 1.2 7 7 Yes Entamoeba invadens 1.2 5 5 Yes Entamoeba histolytica 1 5 5 Yes Selaginella moellendorffii 118 118 Yes Pinus taeda Loblolly pine 44 41 Yes Picea abies Norway spruce 29 29 Yes Eucalyptus grandis v201 Rose gum 84 84 Yes Theobroma cacao B97-61/B2 v1 Cacao 50 50 Yes Gossypium raimondii v221 175 170 Yes Citrus clementina v165 87 86 Yes Citrus sinensis v154 Sweet orange 114 113 Yes Thellungiella halophila v173 66 65 Yes Brassica rapa Chiifu-401 1.2 Field mustard 67 66 Yes Capsella rubella v183 60 58 Yes Arabidopsis lyrata Lyrate rockcress 52 51 Yes Arabidopsis thaliana 10 Thale cress 71 70 Yes Carica papaya Papaya 40 40 Yes Medicago truncatula Barrel medic 128 128 Yes Phaseolus vulgaris v186 French bean 70 69 Yes Glycine max v109 Soybean 107 105 Yes Cucumis sativus v122 Cucumber 66 65 Yes Fragaria vesca Wild strawberry 53 53 Yes Malus domestica v196 Apple 91 88 Yes Prunus persica v139 Peach 48 46 Yes Linum usitatissimum v200 Flax 79 79 Yes Manihot esculenta v147 Cassava 51 51 Yes Populus trichocarpa v156 Black cottonwood 76 76 Yes Vitis vinifera Wine grape 48 47 Yes Mimulus guttatus v140 Spotted monkey flower 69 68 Yes Solanum lycopersicum v.2.3 Tomato 63 63 Yes Solanum tuberosum Potato 89 89 Yes Actinidia chinensis Hongyang 63 62 Yes Aquilegia coerulea v195 101 100 Yes Triticum urartu 22 48 46 Yes Triticum aestivum 22 Bread wheat 171 170 Yes Aegilops tauschii 22 59 58 Yes Brachypodium distachyon Stiff brome 65 65 Yes Oryza barthii 22 African wild rice 76 76 Yes Oryza meridionalis 22 72 70 Yes Oryza glumaepatula 22 87 87 Yes Oryza glaberrima African rice 42 42 Yes Oryza punctata 22 91 91 Yes Oryza nivara 22 72 72 Yes Oryza brachyantha 22 Malo sina 48 48 Yes Oryza sativa ssp. japonica 5.0 Japanese rice 56 56 Yes Oryza sativa v193 Rice 54 54 Yes Phyllostachys heterocycla var. pubescens Kikko-chiku 71 71 Yes Panicum virgatum v202 Switchgrass 107 107 Yes Setaria italica v164 Foxtail millet 64 64 Yes Zea mays subsp. mays Maize 104 103 Yes Zea mays v181 Maize 123 122 Yes Sorghum bicolor Sorghum 53 53 Yes Musa balbisiana Balbis banana 50 48 Yes Musa acuminata 22 Wild Malaysian banana 44 44 Yes Amborella trichopoda 22 42 41 Yes Physcomitrella patens 56 54 Yes Coccomyxa subellipsoidea sp. C-169 v2 47 46 Yes Asterochloris sp. Cgr/DA1pho v1.0 28 27 Yes Chlorella variabilis sp. NC64A 37 33 Yes Chlorella vulgaris 45 44 Yes Volvox carteri f. nagariensis 56 53 Yes Volvox carteri v199 54 51 Yes Chlamydomonas reinhardtii 4.0 71 68 Yes Ostreococcus sp. RCC809 44 43 Yes Ostreococcus lucimarinus CCE9901 44 43 Yes Ostreococcus tauri 41 41 Yes Bathycoccus prasinos 38 37 Yes Micromonas sp. RCC299 60 57 Yes Micromonas pusilla CCMP1545 v3.0 71 69 Yes Cyanidioschyzon merolae strain 10D 22 10 10 Yes Cyanidioschyzon merolae 9 9 Yes Porphyridium purpureum 02_2012 19 19 Yes Thecamonas trahens ATCC 50062 15 14 Yes Bigelowiella natans CCMP2755 22 77 75 Yes Giardia lamblia 2.3 7 7 Yes Cyanophora paradoxa 63 63 Yes Leishmania mexicana 2.4 47 39 Yes Leishmania major strain Friedlin 47 39 Yes Leishmania infantum JPCM5 2.4 46 38 Yes Leishmania braziliensis MHOM/BR/75/M2904 2.4 46 39 Yes Trypanosoma vivax 41 35 Yes Trypanosoma cruzi strain CL Brener 41 35 Yes Trypanosoma congolense 2.4 45 43 Yes Trypanosoma brucei gambiense v4.1 43 38 Yes Trypanosoma brucei TREU927 v4.1 43 38 Yes Ectocarpus siliculosus 60 58 Yes Aureococcus anophagefferens 44 43 Yes Albugo laibachii 22 19 19 Yes Pythium iwayamai DAOM BR242034 22 28 27 Yes Pythium arrhenomanes ATCC 12531 22 60 58 Yes Pythium ultimum v1.7-2 32 31 Yes Pythium aphanidermatum DAOM BR444 22 29 29 Yes Pythium irregulare DAOM BR486 22 36 35 Yes Pythium vexans DAOM BR484 22 29 28 Yes Phytophthora ramorum 1.1 Sudden oak death agent 50 48 Yes Phytophthora sojae 1.1 67 65 Yes Phytophthora infestans T30-4 129 128 Yes Phytophthora capsici 77 75 Yes Hyaloperonospora arabidopsidis 22 26 26 Yes Phaeodactylum tricornutum CCAP 1055/1 61 52 Yes Fragilariopsis cylindrus 157 151 Yes Thalassiosira pseudonana CCMP1335 75 70 Yes Perkinsus marinus ATCC 50983 42 42 Yes Paramecium tetraurelia 55 47 Yes Tetrahymena thermophila SB210 1 27 23 Yes Ichthyophthirius multifiliis strain G5 17 16 Yes Cryptosporidium hominis 9 9 Yes Cryptosporidium muris 11 11 Yes Cryptosporidium parvum Iowa II 13 13 Yes Neospora caninum 22 21 Yes Toxoplasma gondii VEG 21 20 Yes Toxoplasma gondii ME49 21 20 Yes Toxoplasma gondii GT1 20 19 Yes Babesia bovis T2Bo 14 14 Yes Theileria parva 6 6 Yes Theileria annulata 7 7 Yes Plasmodium falciparum 3D7 11 11 Yes Plasmodium vivax SaI-1 7.0 12 11 Yes Plasmodium knowlesi strain H 12 11 Yes Plasmodium yoelii ssp. yoelii 1 10 10 Yes Plasmodium chabaudi 10 10 Yes Plasmodium berghei ANKA 10 10 Yes Symbiodinium minutum clade B1 v1.2 185 181 Yes Naegleria gruberi 16 14 Yes Trichomonas vaginalis 14 14 Yes Guillardia theta CCMP2712 v1.0 89 89 Yes Emiliania huxleyi CCMP1516 132 128 Yes Leptolyngbya sp. PCC 7376 2 2 Yes Gloeocapsa sp. PCC 7428 1 1 Yes Rivularia sp. PCC 7116 1 1 Yes 'Nostoc azollae' 0708 4 4 Yes Nostoc punctiforme PCC 73102 1 1 Yes Anabaena sp. 90 1 1 Yes Ilumatobacter coccineus 3 3 Yes Streptomyces bingchenggensis BCW-1 1 1 Yes Amycolatopsis mediterranei U32 1 1 Yes Kribbella flavida DSM 17836 1 1 Yes Mycobacterium sp. JLS 1 1 Yes Anaerolinea thermophila UNI-1 1 1 Yes Herpetosiphon aurantiacus DSM 785 1 1 Yes Desulfotomaculum acetoxidans DSM 771 1 1 Yes Brevibacillus brevis NBRC 100599 2 2 Yes Paenibacillus mucilaginosus 3016 1 1 Yes Solibacillus silvestris StLB046 2 2 Yes Halobacillus halophilus DSM 2266 1 1 Yes Bacillus sp. 1NLA3E 1 1 Yes Bacillus weihenstephanensis KBAB4 1 1 Yes Bacillus thuringiensis str. Al Hakam 1 1 Yes Bacillus cereus 03BB102 1 1 Yes Bacillus anthracis str. A0248 1 1 Yes Bacillus pseudofirmus OF4 1 1 Yes Bacillus cellulosilyticus DSM 2522 1 1 Yes Bacillus megaterium DSM 319 1 1 Yes Gemmatimonas aurantiaca T-27 2 2 Yes Ignavibacterium album JCM 16511 1 1 Yes Pelodictyon phaeoclathratiforme BU-1 1 1 Yes Chlorobium luteolum DSM 273 1 1 Yes Chlorobium chlorochromatii CaD3 1 1 Yes Chlorobium phaeobacteroides DSM 266 1 1 Yes Chlorobium phaeovibrioides DSM 265 1 1 Yes Chlorobium limicola DSM 245 1 1 Yes Chlorobaculum parvum NCIB 8327 1 1 Yes Chlorobium tepidum TLS 1 1 Yes Prosthecochloris aestuarii DSM 271 1 1 Yes Haliscomenobacter hydrossis DSM 1100 1 1 Yes Saprospira grandis str. Lewin 1 1 Yes Niastella koreensis GR20-10 2 2 Yes Chitinophaga pinensis DSM 2588 1 1 Yes Cytophaga hutchinsonii ATCC 33406 2 2 Yes Fluviicola taffensis DSM 16823 1 1 Yes Owenweeksia hongkongensis DSM 17368 1 1 Yes Gramella forsetii KT0803 1 1 Yes Flavobacterium johnsoniae UW101 1 1 Yes Waddlia chondrophila WSU 86-1044 1 1 Yes Parachlamydia acanthamoebae UV-7 1 1 Yes Simkania negevensis Z 2 2 Yes Chlamydophila pecorum E58 1 1 Yes Chlamydia muridarum Nigg 1 1 Yes Chlamydophila pneumoniae TW-183 1 1 Yes Chlamydophila caviae GPIC 1 1 Yes Chlamydophila felis Fe/C-56 1 1 Yes Chlamydophila abortus S26/3 1 1 Yes Chlamydia psittaci 01DC11 1 1 Yes Chlamydia trachomatis B/Jali20/OT 1 1 Yes Planctomyces limnophilus DSM 3776 1 1 Yes Rhodopirellula baltica SH 1 1 1 Yes Coraliomargarita akajimensis DSM 45221 2 2 Yes Opitutus terrae PB90-1 1 1 Yes Turneriella parva DSM 21527 4 4 Yes Leptospira borgpetersenii serovar Hardjo-bovis str. L550 3 3 Yes Leptospira interrogans serovar Lai str. IPAV 4 4 Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' 1 1 Yes Spirochaeta smaragdinae DSM 11293 1 1 Yes Candidatus Chloracidobacterium thermophilum B 1 1 Yes Candidatus Solibacter usitatus Ellin6076 1 1 Yes Granulicella tundricola MP5ACTX9 1 1 Yes Granulicella mallensis MP5ACTX8 1 1 Yes Candidatus Koribacter versatilis Ellin345 1 1 Yes Terriglobus saanensis SP1PR4 1 1 Yes Terriglobus roseus DSM 18391 2 2 Yes Acidobacterium capsulatum ATCC 51196 1 1 Yes Acidithiobacillus caldus SM-1 1 1 Yes Bacteriovorax marinus SJ 2 2 Yes Desulfobulbus propionicus DSM 2032 1 1 Yes Desulfatibacillum alkenivorans AK-01 1 1 Yes Desulfococcus oleovorans Hxd3 1 1 Yes Desulfovibrio piezophilus 2 2 Yes Desulfovibrio aespoeensis Aspo-2 1 1 Yes Geobacter uraniireducens Rf4 1 1 Yes Haliangium ochraceum DSM 14365 1 1 Yes Sorangium cellulosum 'So ce 56' 1 1 Yes Stigmatella aurantiaca DW4/3-1 1 1 Yes Corallococcus coralloides DSM 2259 3 3 Yes Myxococcus xanthus DK 1622 2 2 Yes Myxococcus fulvus HW-1 2 2 Yes beta proteobacterium CB 1 1 Yes Methylibium petroleiphilum PM1 2 2 Yes Thiomonas arsenitoxydans 1 1 Yes Thiomonas intermedia K12 1 1 Yes Rubrivivax gelatinosus IL144 3 3 Yes Leptothrix cholodnii SP-6 2 2 Yes Burkholderia rhizoxinica HKI 454 1 1 Yes Burkholderia phytofirmans PsJN 2 2 Yes Burkholderia phymatum STM815 3 3 Yes Burkholderia xenovorans LB400 3 3 Yes Ralstonia eutropha JMP134 1 1 Yes Cupriavidus taiwanensis LMG 19424 1 1 Yes Cupriavidus metallidurans CH34 1 1 Yes Cupriavidus necator N-1 1 1 Yes Ralstonia eutropha H16 1 1 Yes Ralstonia pickettii 12D 1 1 Yes Ralstonia solanacearum CFBP2957 2 2 Yes Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 1 1 Yes Burkholderia sp. RPE64 2 2 Yes Burkholderia sp. CCGE1002 3 3 Yes Burkholderia thailandensis E264 2 2 Yes Burkholderia pseudomallei 1106a 2 2 Yes Burkholderia mallei SAVP1 1 1 Yes Burkholderia ambifaria AMMD 1 1 Yes Burkholderia cenocepacia HI2424 1 1 Yes Burkholderia multivorans ATCC 17616 1 1 Yes Burkholderia vietnamiensis G4 2 2 Yes Burkholderia gladioli BSR3 1 1 Yes Burkholderia glumae BGR1 1 1 Yes Verminephrobacter eiseniae EF01-2 1 1 Yes Alicycliphilus denitrificans K601 1 1 Yes Ramlibacter tataouinensis TTB310 1 1 Yes Delftia sp. Cs1-4 1 1 Yes Delftia acidovorans SPH-1 1 1 Yes Polaromonas sp. JS666 1 1 Yes Polaromonas naphthalenivorans CJ2 1 1 Yes Variovorax paradoxus S110 2 2 Yes Rhodoferax ferrireducens T118 1 1 Yes Acidovorax ebreus TPSY 1 1 Yes Acidovorax sp. KKS102 1 1 Yes Acidovorax sp. JS42 1 1 Yes Acidovorax citrulli AAC00-1 1 1 Yes Acidovorax avenae subsp. avenae ATCC 19860 1 1 Yes Comamonas testosteroni CNB-2 1 1 Yes Herminiimonas arsenicoxydans 2 2 Yes Collimonas fungivorans Ter331 1 1 Yes Janthinobacterium sp. Marseille 1 1 Yes Pusillimonas sp. T7-7 1 1 Yes Advenella kashmirensis WT001 1 1 Yes Bordetella petrii DSM 12804 1 1 Yes Bordetella avium 197N 1 1 Yes Bordetella pertussis Tohama I 1 1 Yes Bordetella parapertussis 12822 1 1 Yes Bordetella bronchiseptica RB50 1 1 Yes Achromobacter xylosoxidans A8 1 1 Yes Achromobacter xylosoxidans 1 1 Yes Sphingomonas wittichii RW1 1 1 Yes Maricaulis maris MCS10 2 2 Yes Hirschia baltica ATCC 49814 1 1 Yes Hyphomonas neptunium ATCC 15444 1 1 Yes Ruegeria pomeroyi DSS-3 1 1 Yes Rhodobacter capsulatus SB 1003 1 1 Yes Rhodospirillum centenum SW 1 1 Yes Azospirillum brasilense Sp245 1 1 Yes Candidatus Puniceispirillum marinum IMCC1322 1 1 Yes alpha proteobacterium HIMB5 1 1 Yes alpha proteobacterium HIMB59 1 1 Yes Mesorhizobium opportunistum WSM2075 2 2 Yes Mesorhizobium ciceri biovar biserrulae WSM1271 2 2 Yes Mesorhizobium loti MAFF303099 2 2 Yes Rhodomicrobium vannielii ATCC 17100 1 1 Yes Hyphomicrobium sp. MC1 3 3 Yes Hyphomicrobium denitrificans ATCC 51888 3 3 Yes Oligotropha carboxidovorans OM4 1 1 Yes Rhodopseudomonas palustris BisA53 1 1 Yes Nitrobacter winogradskyi Nb-255 1 1 Yes Nitrobacter hamburgensis X14 1 1 Yes Bradyrhizobium japonicum USDA 110 2 2 Yes Bradyrhizobium sp. ORS 278 1 1 Yes Ferrimonas balearica DSM 9799 1 1 Yes Alcanivorax borkumensis SK2 1 1 Yes Rhodanobacter denitrificans 2 2 Yes Frateuria aurantia DSM 6220 2 2 Yes Pseudoxanthomonas spadix BD-a59 1 1 Yes Pseudoxanthomonas suwonensis 11-1 1 1 Yes Stenotrophomonas maltophilia K279a 1 1 Yes Xylella fastidiosa M23 1 1 Yes Xanthomonas axonopodis pv. citri str. 306 1 1 Yes Xanthomonas albilineans GPE PC73 1 1 Yes Xanthomonas oryzae pv. oryzae PXO99A 1 1 Yes Xanthomonas campestris pv. campestris str. B100 1 1 Yes Allochromatium vinosum DSM 180 1 1 Yes Thiocystis violascens DSM 198 1 1 Yes Legionella pneumophila str. Corby 1 1 Yes gamma proteobacterium HdN1 1 1 Yes Pantoea sp. At-9b 1 1 Yes Salmonella bongori NCTC 12419 2 2 Yes Pseudomonas sp. TKP 1 1 Yes Pseudomonas sp. UW4 1 1 Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421 1 1 Yes Pseudomonas fluorescens SBW25 1 1 Yes Methanosarcina acetivorans C2A 1 1 Yes Methanosarcina mazei Go1 1 1 Yes Methanosarcina barkeri str. Fusaro 1 1 Yes Methanoregula boonei 6A8 1 1 Yes Methanoculleus marisnigri JR1 1 1 Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 84 84 Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 53 53 Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 47 47 Yes Ascaris suum Victoria/Ghent Pig roundworm 19 19 Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 44 44 Yes Cryptococcus neoformans var. grubii H99 22 22 Yes Cryptococcus neoformans B-3501A 19 19 Yes Cryptococcus neoformans JEC21 14 14 Yes Paracoccidioides brasiliensis Pb01 15 15 Yes Paracoccidioides brasiliensis Pb03 13 13 Yes Coccidioides posadasii str. Silveira 18 18 Yes Coccidioides immitis RMSCC 3703 18 18 Yes Coccidioides immitis RMSCC 2394 18 18 Yes Coccidioides immitis H538.4 17 17 Yes Ajellomyces dermatitidis ER-3 17 17 Yes Histoplasma capsulatum H143 17 16 Yes Histoplasma capsulatum H88 19 18 Yes Histoplasma capsulatum G186AR 19 18 Yes Aspergillus fumigatus A1163 19 19 Yes Candida albicans WO-1 12 11 Yes Saccharomyces cerevisiae UC5 12 11 Yes Saccharomyces cerevisiae PW5 11 10 Yes Saccharomyces cerevisiae FL100 7 7 Yes Saccharomyces cerevisiae CLIB324 9 7 Yes Saccharomyces cerevisiae CBS7960 13 11 Yes Saccharomyces cerevisiae YJM269 9 8 Yes Saccharomyces cerevisiae T7 13 12 Yes Saccharomyces cerevisiae FostersB 10 9 Yes Saccharomyces cerevisiae FostersO 11 10 Yes Saccharomyces cerevisiae VL3 12 11 Yes Saccharomyces cerevisiae Vin13 10 10 Yes Saccharomyces cerevisiae LalvinQA23 13 12 Yes Saccharomyces cerevisiae AWRI796 13 12 Yes Saccharomyces cerevisiae Sigma1278b 14 12 Yes Saccharomyces cerevisiae W303 14 12 Yes Saccharomyces cerevisiae JAY291 13 12 Yes Saccharomyces cerevisiae AWRI1631 8 8 Yes Saccharomyces cerevisiae YPS163 2 2 Yes Saccharomyces cerevisiae M22 3 3 Yes Saccharomyces cerevisiae T73 8 7 Yes Saccharomyces cerevisiae CLIB215 9 8 Yes Saccharomyces cerevisiae Y10 2 2 Yes Saccharomyces cerevisiae YJM789 13 12 Yes Saccharomyces cerevisiae YJM789 13 12 Yes Saccharomyces cerevisiae RM11-1a 13 12 Yes Saccharomyces cerevisiae RM11-1a 12 11 Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 14 12 Yes Schizosaccharomyces pombe 972h- 13 13 Yes Batrachochytrium dendrobatidis JEL423 17 16 Yes Batrachochytrium dendrobatidis JAM81 19 18 Yes Theobroma cacao Matina 1-6 v0.9 Cacao 47 46 Yes Hordeum vulgare 22 Domesticated barley 156 153 Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 50 49 Yes Trypanosoma brucei Lister 427 v4.1 43 38 Yes Neospora caninum Nc-Liverpool 6.2 22 21 Yes Plasmodium falciparum HB3 10 10 Yes Plasmodium falciparum Dd2 10 10 Yes Chroococcidiopsis thermalis PCC 7203 1 1 Yes Pleurocapsa minor Pleurocapsa sp. PCC 7327 4 4 Yes Cylindrospermum stagnale PCC 7417 2 2 Yes Anabaena cylindrica PCC 7122 2 2 Yes Amycolatopsis mediterranei RB 1 1 Yes Amycolatopsis mediterranei S699 1 1 Yes Amycolatopsis mediterranei S699 1 1 Yes Actinoplanes friuliensis DSM 7358 1 1 Yes Nocardia brasiliensis ATCC 700358 1 1 Yes Paenibacillus mucilaginosus KNP414 1 1 Yes Paenibacillus mucilaginosus K02 1 1 Yes Bacillus infantis NRRL B-14911 1 1 Yes Bacillus cereus subsp. cytotoxis NVH 391-98 1 1 Yes Bacillus toyonensis BCT-7112 1 1 Yes Bacillus thuringiensis HD-771 1 1 Yes Bacillus thuringiensis HD-789 1 1 Yes Bacillus thuringiensis MC28 1 1 Yes Bacillus thuringiensis serovar chinensis CT-43 1 1 Yes Bacillus thuringiensis YBT-1518 1 1 Yes Bacillus thuringiensis Bt407 1 1 Yes Bacillus thuringiensis serovar konkukian str. 97-27 1 1 Yes Bacillus thuringiensis serovar kurstaki str. HD73 1 1 Yes Bacillus thuringiensis BMB171 1 1 Yes Bacillus thuringiensis serovar finitimus YBT-020 1 1 Yes Bacillus thuringiensis serovar thuringiensis str. IS5056 1 1 Yes Bacillus cereus FRI-35 1 1 Yes Bacillus cereus biovar anthracis str. CI 1 1 Yes Bacillus cereus AH820 1 1 Yes Bacillus cereus AH187 1 1 Yes Bacillus cereus B4264 1 1 Yes Bacillus cereus G9842 1 1 Yes Bacillus cereus Q1 1 1 Yes Bacillus cereus F837/76 1 1 Yes Bacillus cereus NC7401 1 1 Yes Bacillus cereus E33L 1 1 Yes Bacillus cereus ATCC 14579 1 1 Yes Bacillus cereus ATCC 10987 1 1 Yes Bacillus anthracis str. H9401 1 1 Yes Bacillus anthracis str. CDC 684 1 1 Yes Bacillus anthracis str. 'Ames Ancestor' 1 1 Yes Bacillus anthracis str. Sterne 1 1 Yes Bacillus anthracis str. Ames 1 1 Yes Bacillus megaterium WSH-002 3 3 Yes Bacillus megaterium QM B1551 1 1 Yes Chlorobium phaeobacteroides BS1 1 1 Yes Chlamydia pecorum P787 1 1 Yes Chlamydia pecorum W73 1 1 Yes Chlamydia pecorum PV3056/3 1 1 Yes Chlamydophila pneumoniae LPCoLN 1 1 Yes Chlamydophila pneumoniae J138 1 1 Yes Chlamydophila pneumoniae CWL029 1 1 Yes Chlamydophila pneumoniae AR39 1 1 Yes Chlamydia psittaci 01DC12 1 1 Yes Chlamydia psittaci WC 1 1 Yes Chlamydia psittaci M56 1 1 Yes Chlamydia psittaci WS/RT/E30 1 1 Yes Chlamydia psittaci VS225 1 1 Yes Chlamydia psittaci MN 1 1 Yes Chlamydia psittaci GR9 1 1 Yes Chlamydia psittaci 84/55 1 1 Yes Chlamydia psittaci 08DC60 1 1 Yes Chlamydia psittaci 02DC15 1 1 Yes Chlamydia psittaci C19/98 1 1 Yes Chlamydia psittaci NJ1 1 1 Yes Chlamydia psittaci CP3 1 1 Yes Chlamydophila psittaci RD1 1 1 Yes Chlamydia psittaci Mat116 1 1 Yes Chlamydophila psittaci 6BC 1 1 Yes Chlamydophila psittaci 6BC 1 1 Yes Chlamydia trachomatis C/TW-3 1 1 Yes Chlamydia trachomatis L2/434/Bu(f) 1 1 Yes Chlamydia trachomatis L2/434/Bu(i) 1 1 Yes Chlamydia trachomatis IU888 1 1 Yes Chlamydia trachomatis IU824 1 1 Yes Chlamydia trachomatis L2b/Canada2 1 1 Yes Chlamydia trachomatis L2b/Canada1 1 1 Yes Chlamydia trachomatis L3/404/LN 1 1 Yes Chlamydia trachomatis L2b/Ams5 1 1 Yes Chlamydia trachomatis L2b/Ams4 1 1 Yes Chlamydia trachomatis L2b/Ams3 1 1 Yes Chlamydia trachomatis L2b/Ams2 1 1 Yes Chlamydia trachomatis L2b/Ams1 1 1 Yes Chlamydia trachomatis L2b/795 1 1 Yes Chlamydia trachomatis L2b/CV204 1 1 Yes Chlamydia trachomatis L2b/LST 1 1 Yes Chlamydia trachomatis L2b/UCH-2 1 1 Yes Chlamydia trachomatis L2b/8200/07 1 1 Yes Chlamydia trachomatis L2/25667R 1 1 Yes Chlamydia trachomatis L1/224 1 1 Yes Chlamydia trachomatis L1/115 1 1 Yes Chlamydia trachomatis L1/440/LN 1 1 Yes Chlamydia trachomatis K/SotonK1 1 1 Yes Chlamydia trachomatis Ia/SotonIa3 1 1 Yes Chlamydia trachomatis Ia/SotonIa1 1 1 Yes Chlamydia trachomatis G/SotonG1 1 1 Yes Chlamydia trachomatis F/SotonF3 1 1 Yes Chlamydia trachomatis F/SW5 1 1 Yes Chlamydia trachomatis F/SW4 1 1 Yes Chlamydia trachomatis E/SotonE8 1 1 Yes Chlamydia trachomatis E/SotonE4 1 1 Yes Chlamydia trachomatis E/SW3 1 1 Yes Chlamydia trachomatis D/SotonD6 1 1 Yes Chlamydia trachomatis D/SotonD5 1 1 Yes Chlamydia trachomatis D/SotonD1 1 1 Yes Chlamydia trachomatis A/5291 1 1 Yes Chlamydia trachomatis A/363 1 1 Yes Chlamydia trachomatis RC-J/971 1 1 Yes Chlamydia trachomatis RC-L2/55 1 1 Yes Chlamydia trachomatis J/6276tet1 1 1 Yes Chlamydia trachomatis RC-J/966 1 1 Yes Chlamydia trachomatis RC-J(s)/122 1 1 Yes Chlamydia trachomatis RC-F(s)/342 1 1 Yes Chlamydia trachomatis RC-L2(s)/3 1 1 Yes Chlamydia trachomatis RC-J/953 1 1 Yes Chlamydia trachomatis RC-J943 1 1 Yes Chlamydia trachomatis RC-Fs852 1 1 Yes Chlamydia trachomatis RC-L2s46 1 1 Yes Chlamydia trachomatis RC-F69 1 1 Yes Chlamydia trachomatis L2c 1 1 Yes Chlamydia trachomatis D-LC 1 1 Yes Chlamydia trachomatis D-EC 1 1 Yes Chlamydia trachomatis G/9301 1 1 Yes Chlamydia trachomatis G/11074 1 1 Yes Chlamydia trachomatis G/11222 1 1 Yes Chlamydia trachomatis G/9768 1 1 Yes Chlamydia trachomatis E/150 1 1 Yes Chlamydia trachomatis E/11023 1 1 Yes Chlamydia trachomatis B/TZ1A828/OT 1 1 Yes Chlamydia trachomatis Sweden2 1 1 Yes Chlamydia trachomatis E/Bour 1 1 Yes Chlamydia trachomatis A2497 1 1 Yes Chlamydia trachomatis A2497 1 1 Yes Chlamydia trachomatis L2b/UCH-1/proctitis 1 1 Yes Chlamydia trachomatis 434/Bu 1 1 Yes Chlamydia trachomatis A/HAR-13 1 1 Yes Chlamydia trachomatis D/UW-3/CX 1 1 Yes Singulisphaera acidiphila DSM 18658 1 1 Yes Leptospira borgpetersenii serovar Hardjo-bovis str. JB197 3 3 Yes Leptospira interrogans serovar Lai str. 56601 4 4 Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 4 4 Yes Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' 1 1 Yes Acidithiobacillus ferrooxidans ATCC 23270 1 1 Yes Desulfocapsa sulfexigens DSM 10523 1 1 Yes Desulfovibrio desulfuricans ND132 2 2 Yes Sorangium cellulosum So0157-2 1 1 Yes Myxococcus stipitatus DSM 14675 2 2 Yes Burkholderia phenoliruptrix BR3459a 3 3 Yes Pandoraea pnomenusa 3kgm 2 2 Yes Ralstonia pickettii 12J 1 1 Yes Ralstonia solanacearum FQY_4 2 2 Yes Ralstonia solanacearum Po82 2 2 Yes Ralstonia solanacearum PSI07 1 1 Yes Ralstonia solanacearum CMR15 1 1 Yes Ralstonia solanacearum GMI1000 2 2 Yes Polynucleobacter necessarius subsp. necessarius STIR1 1 1 Yes Burkholderia sp. YI23 4 4 Yes Burkholderia sp. CCGE1003 1 1 Yes Burkholderia sp. CCGE1001 1 1 Yes Burkholderia sp. KJ006 1 1 Yes Burkholderia thailandensis MSMB121 2 2 Yes Burkholderia pseudomallei MSHR305 2 2 Yes Burkholderia pseudomallei NCTC 13179 2 2 Yes Burkholderia pseudomallei BPC006 2 2 Yes Burkholderia pseudomallei 1026b 2 2 Yes Burkholderia pseudomallei MSHR346 1 1 Yes Burkholderia pseudomallei 668 2 2 Yes Burkholderia pseudomallei 1710b 2 2 Yes Burkholderia pseudomallei K96243 2 2 Yes Burkholderia mallei NCTC 10229 2 2 Yes Burkholderia mallei NCTC 10247 2 2 Yes Burkholderia mallei ATCC 23344 2 2 Yes Burkholderia lata 1 1 Yes Burkholderia ambifaria MC40-6 1 1 Yes Burkholderia cenocepacia MC0-3 1 1 Yes Burkholderia cenocepacia AU 1054 1 1 Yes Burkholderia cenocepacia J2315 1 1 Yes Burkholderia multivorans ATCC 17616 1 1 Yes Burkholderia cepacia GG4 1 1 Yes Alicycliphilus denitrificans BC 1 1 Yes Variovorax paradoxus B4 2 2 Yes Variovorax paradoxus EPS 2 2 Yes Bordetella pertussis CS 1 1 Yes Bordetella parapertussis 18323 1 1 Yes Bordetella parapertussis Bpp5 1 1 Yes Bordetella bronchiseptica MO149 1 1 Yes Bordetella bronchiseptica 253 1 1 Yes Achromobacter xylosoxidans NBRC 15126 = ATCC 27061 1 1 Yes Magnetospirillum gryphiswaldense MSR-1 v2 2 2 Yes Candidatus Pelagibacter ubique HTCC1062 1 1 Yes Mesorhizobium australicum WSM2073 2 2 Yes Hyphomicrobium denitrificans 1NES1 2 2 Yes Oligotropha carboxidovorans OM5 1 1 Yes Oligotropha carboxidovorans OM5 1 1 Yes Rhodopseudomonas palustris DX-1 1 1 Yes Rhodopseudomonas palustris TIE-1 1 1 Yes Rhodopseudomonas palustris HaA2 1 1 Yes Rhodopseudomonas palustris BisB5 1 1 Yes Rhodopseudomonas palustris BisB18 1 1 Yes Rhodopseudomonas palustris CGA009 1 1 Yes Bradyrhizobium sp. S23321 1 1 Yes Bradyrhizobium sp. BTAi1 1 1 Yes Bradyrhizobium oligotrophicum S58 1 1 Yes Bradyrhizobium japonicum USDA 6 2 2 Yes Alcanivorax dieselolei B5 1 1 Yes Stenotrophomonas maltophilia D457 1 1 Yes Stenotrophomonas maltophilia JV3 1 1 Yes Stenotrophomonas maltophilia R551-3 1 1 Yes Xylella fastidiosa subsp. fastidiosa GB514 1 1 Yes Xylella fastidiosa M12 1 1 Yes Xylella fastidiosa Temecula1 1 1 Yes Xylella fastidiosa 9a5c 1 1 Yes Xanthomonas citri subsp. citri Aw12879 1 1 Yes Xanthomonas campestris pv. vesicatoria str. 85-10 1 1 Yes Xanthomonas axonopodis pv. citrumelo F1 1 1 Yes Xanthomonas axonopodis Xac29-1 1 1 Yes Xanthomonas oryzae pv. oryzicola BLS256 1 1 Yes Xanthomonas oryzae pv. oryzae MAFF 311018 1 1 Yes Xanthomonas oryzae pv. oryzae KACC 10331 1 1 Yes Xanthomonas campestris pv. raphani 756C 1 1 Yes Xanthomonas campestris pv. campestris str. 8004 1 1 Yes Xanthomonas campestris pv. campestris str. ATCC 33913 1 1 Yes Legionella pneumophila str. Paris 1 1 Yes Legionella pneumophila str. Lens 1 1 Yes Legionella pneumophila subsp. pneumophila LPE509 1 1 Yes Legionella pneumophila subsp. pneumophila str. Thunder Bay 1 1 Yes Legionella pneumophila subsp. pneumophila str. Philadelphia 1 1 1 Yes Legionella pneumophila subsp. pneumophila 1 1 Yes Legionella pneumophila subsp. pneumophila 1 1 Yes Legionella pneumophila subsp. pneumophila ATCC 43290 1 1 Yes Legionella pneumophila 2300/99 Alcoy 1 1 Yes Salmonella bongori N268-08 2 2 Yes Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980 1 1 Yes Pseudomonas poae RE*1-1-14 2 2 Yes Pseudomonas fluorescens F113 1 1 Yes Pseudomonas fluorescens A506 2 2 Yes Pseudomonas fluorescens R124 1 1 Yes Pseudomonas fluorescens Pf0-1 1 1 Yes Candidatus Nitrososphaera gargensis Ga9.2 1 1 Yes Methanoregula formicica Methanoregula formicicum SMSP 1 1 Yes Homo sapiens 75_37 (old version GRC) Human 210 210 Yes Homo sapiens Human 76 76 Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 44 44 Yes Heliconius numata 10 10 Yes Loa loa v3.3 (Request) Eye worm 21 21 Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 22 21 Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 18 18 Yes Moniliophthora perniciosa FA553 16 16 Yes Encephalitozoon intestinalis 1 1 Yes Encephalitozoon cuniculi (endoparasite) 1 1 Yes Picea sitchensis Sitka spruce 3 3 Yes Lotus japonicus 59 59 Yes Malus x domestica (Duplicate) Apple 91 88 Yes Ricinus communis Castor bean 44 44 Yes Nicotiana benthamiana 0.4.4 (Early draft) 89 86 Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 59 59 Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 63 63 Yes Phoenix dactylifera Date palm 46 45 Yes Guillardia theta (nucleomorph) 2 2 Yes Homo sapiens 69_37 Human 54 54 Yes Pan troglodytes 69_2.1.4 Chimpanzee 43 43 Yes Gorilla gorilla 69_3.1 Western gorilla 50 50 Yes Pongo abelii 69_2 Sumatran orangutan 45 45 Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 41 41 Yes Macaca mulatta 69_1 Rhesus monkey 41 41 Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 46 46 Yes Otolemur garnettii 69_3 Small-eared galago 48 48 Yes Microcebus murinus 69_1 Gray mouse lemur 38 38 Yes Rattus norvegicus 69_3.4 Norway rat 46 46 Yes Mus musculus 69_38 House mouse 45 45 Yes Dipodomys ordii 69_1 Ord's kangaroo rat 39 38 Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 37 37 Yes Cavia porcellus 69_3 Domestic guinea pig 45 45 Yes Oryctolagus cuniculus 69_2 Rabbit 45 45 Yes Ochotona princeps 69 American pika 37 37 Yes Tupaia belangeri 69 Northern tree shrew 34 33 Yes Sus scrofa 69_10.2 Pig 49 49 Yes Bos taurus 69_3.1 Cattle 48 48 Yes Vicugna pacos 69_1 Alpaca 23 23 Yes Tursiops truncatus 69_1 Bottlenose dolphin 44 43 Yes Mustela putorius furo 69_1.0 Domestic ferret 49 49 Yes Ailuropoda melanoleuca 69_1 Giant panda 48 48 Yes Canis familiaris 69_3.1 Dog 47 47 Yes Felis catus 69 Domestic cat 40 37 Yes Equus caballus 69_2 Horse 46 46 Yes Myotis lucifugus 69_2.0 Little brown bat 43 42 Yes Pteropus vampyrus 69_1 Large flying fox 43 43 Yes Sorex araneus 69_1 European shrew 29 29 Yes Erinaceus europaeus 69 Western European hedgehog 29 28 Yes Procavia capensis 69_1 Cape rock hyrax 40 39 Yes Loxodonta africana 69_3 African savanna elephant 46 46 Yes Echinops telfairi 69 Small Madagascar hedgehog 38 34 Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 34 33 Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 26 25 Yes Macropus eugenii 69_1.0 Tammar wallaby 38 37 Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 43 43 Yes Monodelphis domestica 69_5 Gray short-tailed opossum 42 42 Yes Ornithorhynchus anatinus 69_5 Platypus 44 44 Yes Petromyzon marinus 69_7.0 Sea lamprey 28 28 Yes Meleagris gallopavo 69_2 Turkey 38 38 Yes Gallus gallus 69_2 Chicken 37 37 Yes Taeniopygia guttata 69_3.2.4 Zebra finch 48 48 Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 40 40 Yes Anolis carolinensis 69_2.0 Green anole 44 44 Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 35 35 Yes Latimeria chalumnae 69_1 Coelacanth 41 41 Yes Gadus morhua 69_1 Atlantic cod 42 42 Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 51 51 Yes Takifugu rubripes 69_4 Torafugu 51 51 Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 48 48 Yes Oryzias latipes 69_1 Japanese medaka 44 44 Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 54 54 Yes Oreochromis niloticus 69_1.0 Nile tilapia 52 52 Yes Danio rerio 69_9 Zebrafish 71 71 Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 20 20 Yes Ciona intestinalis 69 Vase tunicate 21 21 Yes Drosophila melanogaster 69_5 Fruit fly 32 32 Yes Caenorhabditis elegans 69_215 Roundworm 36 36 Yes Saccharomyces cerevisiae 69_4 Baker's yeast 14 12 Yes Arabidopsis thaliana 10 Thale cress 50 49 Yes 1_Upper_euphotic (meta-genome) 1 1 Yes 2_Base_of_chrolophyll_max (meta-genome) 1 1 Yes 4_050719Q (meta-genome) 2 2 Yes 4_Deep_abyss (meta-genome) 4 4 Yes 5_050719P (meta-genome) 2 2 Yes 6_Upper_euphotic (meta-genome) 3 3 Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome) 1 1 Yes Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome) 3 3 Yes Air microbial communities Singapore indoor air filters 1 (meta-genome) 1 1 Yes Air microbial communities Singapore indoor air filters 2 (meta-genome) 2 2 Yes Atta cephalotes fungus garden (ACEF) (meta-genome) 1 1 Yes Combined (meta-genome) 6 6 Yes Cyphomyrmex longiscapus fungus garden (meta-genome) 2 2 Yes Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome) 2 2 Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome) 3 3 Yes Dump bottom (Dump bottom) (meta-genome) 21 21 Yes Dump top (Dump top) (meta-genome) 21 21 Yes Endophytic microbiome from Rice (meta-genome) 7 7 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome) 3 3 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome) 3 3 Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome) 1 1 Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome) 7 7 Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome) 1 1 Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome) 2 2 Yes Guerrero Negro salt ponds hypersaline mat 02(H) (meta-genome) 1 1 Yes Guerrero Negro salt ponds hypersaline mat 04(N) (meta-genome) 2 2 Yes Guerrero Negro salt ponds hypersaline mat 05(O) (meta-genome) 1 1 Yes Guerrero Negro salt ponds hypersaline mat 07(S) (meta-genome) 2 2 Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome) 1 1 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome) 1 1 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome) 1 1 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome) 2 2 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome) 2 2 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome) 2 2 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome) 4 4 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome) 3 3 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome) 6 6 Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome) 9 9 Yes Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome) 13 13 Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome) 6 6 Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome) 41 41 Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome) 14 14 Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome) 11 11 Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome) 10 10 Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome) 6 6 Yes Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome) 13 13 Yes Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome) 4 4 Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome) 3 3 Yes NCBI 2017_08 genome 61771 61273 Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome) 22 22 Yes Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome) 1 1 Yes Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome) 1 1 Yes Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome) 2 2 Yes Protozoadb 2010_08 (Protozoadb) 586 539 Yes simHC - Simulated High Complexity Metagenome (meta-genome) 5 5 Yes simLC - Simulated Low Complexity Metagenome (meta-genome) 6 6 Yes simMC - Simulated Medium Complexity Metagenome (meta-genome) 7 7 Yes Sludge/Australian, Phrap Assembly (meta-genome) 2 2 Yes Sludge/US, Jazz Assembly (meta-genome) 1 1 Yes Sludge/US, Phrap Assembly (meta-genome) 2 2 Yes Soil microbial communities from Minnesota Farm (meta-genome) 27 27 Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome) 24 24 Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome) 34 34 Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome) 13 13 Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome) 17 17 Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome) 23 23 Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome) 30 30 Yes STRING v9.0.5 (STRING) 4262 4162 Yes Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome) 7 7 Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome) 18 18 Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome) 2 2 Yes Uniprot 2018_03 genome 56585 55527 Yes Uranium Contaminated Groundwater FW106 (meta-genome) 3 3 Yes Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome) 6 6 Yes Global Ocean Sampling Expedition (GOS) 1758 1756 Yes NCBI plasmid sequences (Plasmids) 20 20 Yes NCBI viral sequences (Viral) 28 28 Yes PDB chains (SCOP 1.75 ) (PDB) 13 13 Yes Protein Data Bank (all PDB sequenc) 369 369 Yes SCOP2 SCOPe CATH ECOD (all domain sequ) 723 723 Yes TargetDB 202 196 Yes The Salmonella enterica Pan-genome (meta-genome) 3 3 Yes UniProt 15 15
