SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


MaoC-like family domain assignments
in
PDB chains (SCOP 1.75)

Assignment details

(show help)


PDB chains (SCOP 1.75) (PDB) has 14 significant domains in 9 proteins.

     

Sequence ID   Superfamily evalue   Family evalue   Region   Closest structure  
1iq6A   1.12e-50   0.0000142   6-134   1iq6 A:  
1pn2A   5.97e-40   0.0000408   157-260   1pn2 A:152-275  
  1.92e-32   0.000000444   7-149   1pn2 A:4-151  
1pn4A   6.12e-36   0.0000408   157-260   1pn2 A:152-275  
  2.06e-32   0.000000444   7-149   1pn2 A:4-151  
1q6wA   4.24e-51   0.00000392   14-158   1q6w A:  
1s9cA   1.83e-50   0.000000384   10-161   1s9c A:10-163  
  2.96e-46   0.0000154   168-285   1s9c A:164-289  
2b3nA   1.44e-36   0.00000918   35-158   2b3n A:6-159  
2bi0A   1.76e-30   0.000000144   188-335   2bi0 A:186-337  
  2.28e-29   0.0000000341   10-181   2bi0 A:8-185  
2c2iA   3.06e-50   0.000000314   22-143   2c2i A:2-150  
2cdhS   1.98e-46   0.0000154   127-244   1s9c A:164-289  
  1.16e-32   0.00000583   1-116   1s9c A:10-163  

Jump to [ Top of page · Assignment details · Add assignments from individual genomes ]


Add assignments from groups of genomes

View all assignments containing a MaoC-like domain in each group of genomes.

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes ]


Add assignments from individual genomes

Select additional genomes you would like to see domain assignments for, then click 'Submit'.

Select to display   Genome       Domains   Proteins
No Yes ALL   56491 56491
No Yes Homo sapiens 76_38 Human 15 8
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 2 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 3 2
No Yes Pongo abelii 76_2 Sumatran orangutan 2 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 2 1
No Yes Papio anubis 76 Olive baboon 2 1
No Yes Macaca mulatta 76_1 Rhesus monkey 2 1
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 7 4
No Yes Otolemur garnettii 76_3 Small-eared galago 2 1
No Yes Microcebus murinus 76_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 2 1
No Yes Mus musculus 76_38 House mouse 2 1
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 2 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 2 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 2 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 3 2
No Yes Oryctolagus cuniculus 76_2 Rabbit 2 1
No Yes Ochotona princeps 76 American pika 2 1
No Yes Tupaia belangeri 76 Northern tree shrew 1 1
No Yes Sus scrofa 76_10.2 Pig 1 1
No Yes Bos taurus 76_3.1 Cattle 2 1
No Yes Ovis aries 76_3.1 Sheep 2 1
No Yes Vicugna pacos 76_1 Alpaca 2 1
No Yes Tursiops truncatus 76_1 Bottlenose dolphin 2 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 2 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 2 1
No Yes Canis familiaris 76_3.1 Dog 4 2
No Yes Felis catus 76_6.2 Domestic cat 2 1
No Yes Equus caballus 76_2 Horse 2 1
No Yes Myotis lucifugus 76_2.0 Little brown bat 2 1
No Yes Pteropus vampyrus 76_1 Large flying fox 2 1
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Erinaceus europaeus 76 Western European hedgehog 2 1
No Yes Procavia capensis 76_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 1 1
No Yes Echinops telfairi 76 Small Madagascar hedgehog 2 1
No Yes Dasypus novemcinctus 76_2 Nine-banded armadillo 4 2
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 2 1
No Yes Macropus eugenii 76_1.0 Tammar wallaby 2 1
No Yes Sarcophilus harrisii 76_7.0 Tasmanian devil 2 1
No Yes Monodelphis domestica 76_5 Gray short-tailed opossum 2 1
No Yes Ornithorhynchus anatinus 76_5 Platypus 2 1
No Yes Saccoglossus kowalevskii v3.0   2 1
No Yes Petromyzon marinus 76_7.0 Sea lamprey 2 1
No Yes Meleagris gallopavo 76_2 Turkey 1 1
No Yes Gallus gallus 76_4 Chicken 2 1
No Yes Anas platyrhynchos 76_1.0 Mallard 2 1
No Yes Taeniopygia guttata 76_3.2.4 Zebra finch 2 1
No Yes Ficedula albicollis 76_1.0 Collared flycatcher 2 1
No Yes Pelodiscus sinensis 76_1.0 Chinese soft-shelled turtle 2 1
No Yes Anolis carolinensis 76_2.0 Green anole 2 1
No Yes Xenopus laevis African clawed frog 4 2
No Yes Xenopus tropicalis 76_4.2 Tropical clawed frog 2 1
No Yes Latimeria chalumnae 76_1 Coelacanth 4 2
No Yes Lepisosteus oculatus 76 Spotted gar 4 2
No Yes Gadus morhua 76_1 Atlantic cod 2 1
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 2 1
No Yes Takifugu rubripes 76_4 Torafugu 4 2
No Yes Gasterosteus aculeatus 76_1 Three-spined stickleback 2 1
No Yes Oryzias latipes 76_1 Japanese medaka 2 1
No Yes Xiphophorus maculatus 76_4.4.2 Southern platyfish 2 1
No Yes Poecilia formosa 76 Amazon molly 2 1
No Yes Oreochromis niloticus 76_1.0 Nile tilapia 2 1
No Yes Astyanax mexicanus 76 Mexican tetra 1 1
No Yes Danio rerio 76_9 Zebrafish 2 1
No Yes Oikopleura dioica   2 1
No Yes Ciona savignyi 76_2.0 Pacific transparent sea squirt 2 1
No Yes Ciona intestinalis 76 Vase tunicate 2 1
No Yes Strongylocentrotus purpuratus v3.1 Purple sea urchin 2 2
No Yes Adineta vaga   4 2
No Yes Octopus bimaculoides 280   2 1
No Yes Crassostrea gigas 22 Pacific oyster 2 1
No Yes Lottia gigantea Owl limpet 2 1
No Yes Helobdella robusta   2 1
No Yes Capitella sp. I   2 1
No Yes Danaus plexippus OGS1.0 Monarch butterfly 1 1
No Yes Bombyx mori Domestic silkworm 2 1
No Yes Nasonia vitripennis Jewel wasp 2 1
No Yes Apis mellifera 38.2d (Not maintained) Honey bee 4 2
No Yes Harpegnathos saltator v3.3 Jerdon's jumping ant 2 1
No Yes Linepithema humile v1.1 Argentine ant 2 1
No Yes Pogonomyrmex barbatus v1.2 Red harvester ant 1 1
No Yes Solenopsis invicta v.2.2.3 Red fire ant 2 1
No Yes Acromyrmex echinatior v3.8 Panamanian leafcutter ant 2 1
No Yes Atta cephalotes v1.1   1 1
No Yes Camponotus floridanus v3.3 Florida carpenter ant 1 1
No Yes Lucilia cuprina Australian sheep blowfly 2 1
No Yes Drosophila grimshawi 1.3   2 1
No Yes Drosophila willistoni 1.3   2 1
No Yes Drosophila pseudoobscura 2.13   2 1
No Yes Drosophila persimilis 1.3   2 1
No Yes Drosophila suzukii   2 1
No Yes Drosophila yakuba 1.3   2 1
No Yes Drosophila melanogaster 76_5 Fruit fly 2 1
No Yes Drosophila erecta 1.3   2 1
No Yes Drosophila ananassae 1.3   2 1
No Yes Drosophila virilis 1.2   2 1
No Yes Drosophila mojavensis 1.3   2 1
No Yes Megaselia scalaris 22   1 1
No Yes Aedes aegypti 55 (Not maintained) Yellow fever mosquito 2 1
No Yes Culex pipiens quinquefasciatus Southern house mosquito 2 1
No Yes Anopheles darlingi 22 American malaria mosquito 2 1
No Yes Anopheles gambiae 49_3j African malaria mosquito 2 1
No Yes Tribolium castaneum 3.0 Red flour beetle 2 1
No Yes Pediculus humanus corporis (Early assembly) Human body louse 2 1
No Yes Acyrthosiphon pisum Pea aphid 2 1
No Yes Rhodnius prolixus 22   1 1
No Yes Daphnia pulex Common water flea 2 1
No Yes Strigamia maritima 22   2 1
No Yes Tetranychus urticae Two-spotted spider mite 2 1
No Yes Ixodes scapularis (Preliminary) Black-legged tick 2 1
No Yes Pristionchus pacificus   6 4
No Yes Meloidogyne incognita Southern root-knot nematode 1 1
No Yes Onchocerca volvulus 22   1 1
No Yes Brugia malayi WS250 Agent of lymphatic filariasis 2 1
No Yes Caenorhabditis japonica   2 1
No Yes Caenorhabditis brenneri   4 2
No Yes Caenorhabditis remanei   2 1
No Yes Caenorhabditis elegans 76_235 Roundworm 2 1
No Yes Caenorhabditis briggsae 2   2 1
No Yes Acropora digitifera v1.0   2 1
No Yes Nematostella vectensis 1.0 Starlet sea anemone 2 1
No Yes Hydra vulgaris   1 1
No Yes Amphimedon queenslandica   2 1
No Yes Trichoplax adhaerens   2 1
No Yes Proterospongia sp. ATCC 50818   2 2
No Yes Monosiga brevicollis   3 2
No Yes Sphaeroforma arctica JP610   1 1
No Yes Capsaspora owczarzaki ATCC 30864   2 1
No Yes Conidiobolus coronatus NRRL28638 v1.0   1 1
No Yes Mortierella verticillata NRRL 6337   2 2
No Yes Phycomyces blakesleeanus   3 3
No Yes Rhizopus oryzae RA 99-880   2 2
No Yes Mucor circinelloides   2 2
No Yes Rhizomucor miehei CAU432   3 3
No Yes Sporisorium reilianum 22   1 1
No Yes Ustilago maydis   1 1
No Yes Mixia osmundae IAM 14324 v1.0   1 1
No Yes Cronartium quercuum f. sp. fusiforme G11 v1.0   1 1
No Yes Puccinia graminis f. sp. tritici CRL 75-36-700-3   5 3
No Yes Melampsora laricis-populina   2 2
No Yes Rhodotorula graminis WP1 v1.0   1 1
No Yes Sporobolomyces roseus IAM 13481   1 1
No Yes Microbotryum violaceum 22   1 1
No Yes Sphaerobolus stellatus v1.0   1 1
No Yes Piloderma croceum F 1598 v1.0   1 1
No Yes Serpula lacrymans var. lacrymans S7.9   1 1
No Yes Coniophora puteana   1 1
No Yes Hydnomerulius pinastri v2.0   1 1
No Yes Paxillus rubicundulus Ve08.2h10 v1.0   1 1
No Yes Pisolithus microcarpus 441 v1.0   2 2
No Yes Pisolithus tinctorius Marx 270 v1.0   1 1
No Yes Scleroderma citrinum Foug A v1.0   1 1
No Yes Coprinopsis cinerea okayama7 130 v3   1 1
No Yes Pleurotus ostreatus Oyster mushroom 1 1
No Yes Amanita thiersii Skay4041 v1.0   1 1
No Yes Amanita muscaria Koide v1.0 Fly agaric 1 1
No Yes Galerina marginata v1.0   1 1
No Yes Hebeloma cylindrosporum h7 v2.0   1 1
No Yes Laccaria bicolor S238N-H82   1 1
No Yes Agaricus bisporus var. bisporus   1 1
No Yes Schizophyllum commune   1 1
No Yes Stereum hirsutum FP-91666 SS1 v1.0   1 1
No Yes Heterobasidion annosum   1 1
No Yes Gloeophyllum trabeumv1.0   2 1
No Yes Punctularia strigosozonata v1.0   1 1
No Yes Sebacina vermifera MAFF 305830 v1.0   1 1
No Yes Fomitiporia mediterranea v1.0   1 1
No Yes Tulasnella calospora AL13/4D v1.0   1 1
No Yes Postia placenta   1 1
No Yes Wolfiporia cocos MD-104 SS10 v1.0   1 1
No Yes Fomitopsis pinicolav1.0   1 1
No Yes Fomitopsis pinicola FP-58527 SS1 v3.0   1 1
No Yes Phanerochaete chrysosporium RP-78 2.1   1 1
No Yes Dichomitus squalens   2 1
No Yes Trametes versicolor v1.0   1 1
No Yes Tremella mesenterica Witches' butter 1 1
No Yes Daldinia eschscholzii EC12 v1.0   1 1
No Yes Apiospora montagnei NRRL 25634 v1.0   1 1
No Yes Magnaporthe poae ATCC 64411 22   2 1
No Yes Magnaporthe grisea 70-15   1 1
No Yes Podospora anserina   1 1
No Yes Sporotrichum thermophile ATCC 42464   1 1
No Yes Thielavia terrestris NRRL 8126   1 1
No Yes Chaetomium globosum CBS 148.51   1 1
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Cryphonectria parasitica Chestnut blight fungus 2 1
No Yes Verticillium albo-atrum VaMs.102   1 1
No Yes Verticillium dahliae VdLs.17   2 2
No Yes Acremonium alcalophilumv 1.0   1 1
No Yes Glomerella graminicola 22   2 1
No Yes Fusarium graminearum   1 1
No Yes Nectria haematococca mpVI   1 1
No Yes Fusarium oxysporum f. sp. lycopersici 4286   2 2
No Yes Fusarium verticillioides 7600   1 1
No Yes Trichoderma asperellum CBS 433.97 v1.0   1 1
No Yes Trichoderma atroviride   1 1
No Yes Trichoderma citrinoviride v1.0   1 1
No Yes Trichoderma reesei 1.2   1 1
No Yes Trichoderma virens Gv29-8   1 1
No Yes Trichoderma longibrachiatum ATCC 18648 v1.0   1 1
No Yes Trichoderma harzianum CBS 226.95 v1.0   1 1
No Yes Amorphotheca resinae v1.0 Creosote fungus 1 1
No Yes Botrytis cinerea B05.10   1 1
No Yes Sclerotinia sclerotiorum   2 1
No Yes Blumeria graminis 22   1 1
No Yes Didymella exigua CBS 183.55 v1.0   2 1
No Yes Leptosphaeria maculans 22   2 1
No Yes Setosphaeria turcica v1.0   1 1
No Yes Cochliobolus miyabeanus ATCC 44560 v1.0   2 1
No Yes Cochliobolus victoriae FI3 v1.0   2 1
No Yes Cochliobolus carbonum 26-R-13 v1.0   2 1
No Yes Cochliobolus heterostrophus Southern corn leaf blight pathogen 2 1
No Yes Alternaria brassicicola   1 1
No Yes Cochliobolus lunatus m118 v2.0   1 1
No Yes Pyrenophora teres f. teres 22   1 1
No Yes Pyrenophora tritici-repentis   1 1
No Yes Stagonospora nodorum   2 1
No Yes Mycosphaerella graminicola IPO323   1 1
No Yes Zasmidium cellare ATCC 36951 v1.0   2 2
No Yes Dothistroma septosporum   3 2
No Yes Septoria musiva v1.0   1 1
No Yes Mycosphaerella fijiensis CIRAD86   2 2
No Yes Aureobasidium pullulans var. subglaciale EXF-2481 v1.0   2 1
No Yes Paracoccidioides brasiliensis Pb18   1 1
No Yes Coccidioides posadasii RMSCC 3488   1 1
No Yes Coccidioides immitis RS   1 1
No Yes Ajellomyces dermatitidis SLH14081   1 1
No Yes Histoplasma capsulatum class NAmI strain WU24   1 1
No Yes Microsporum canis CBS 113480   1 1
No Yes Trichophyton equinum CBS 127.97   1 1
No Yes Trichophyton verrucosum HKI 0517   1 1
No Yes Arthroderma benhamiae CBS 112371   1 1
No Yes Trichophyton tonsurans CBS 112818   1 1
No Yes Trichophyton rubrum CBS 118892   1 1
No Yes Uncinocarpus reesii 1704   2 1
No Yes Aspergillus zonatus v1.0   1 1
No Yes Penicillium chrysogenum Wisconsin 54-1255   1 1
No Yes Penicillium chrysogenum v1.0   1 1
No Yes Aspergillus acidus v1.0   1 1
No Yes Aspergillus fumigatus Af293   1 1
No Yes Aspergillus brasiliensis v1.0   1 1
No Yes Aspergillus nidulans FGSC A4   2 1
No Yes Aspergillus sydowii v1.0   2 1
No Yes Aspergillus versicolor v1.0   1 1
No Yes Aspergillus glaucus   1 1
No Yes Aspergillus carbonarius ITEM 5010   1 1
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Aspergillus terreus NIH2624   1 1
No Yes Aspergillus tubingensis v1.0   1 1
No Yes Aspergillus wentii v1.0   1 1
No Yes Aspergillus oryzae RIB40   2 1
No Yes Aspergillus niger 22   1 1
No Yes Aspergillus flavus NRRL3357   2 1
No Yes Aspergillus clavatus NRRL 1   1 1
No Yes Penicillium marneffei ATCC 18224   2 1
No Yes Tuber melanosporum Mel28 22   1 1
No Yes Tuber melanosporum Vittad Perigord truffle 1 1
No Yes Hansenula polymorpha v2.0   2 1
No Yes Dekkera bruxellensis CBS 2499 v2.0   2 1
No Yes Pichia membranifaciensv1.0   2 1
No Yes Candida tanzawaensis NRRL Y-17324 v1.0   2 1
No Yes Candida dubliniensis CD36   2 1
No Yes Candida tropicalis MYA-3404   2 1
No Yes Candida parapsilosis   2 1
No Yes Candida albicans SC5314   2 1
No Yes Lodderomyces elongisporus NRRL YB-4239   2 1
No Yes Babjeviella inositovora NRRL Y-12698 v1.0   2 1
No Yes Pichia stipitis CBS 6054   2 1
No Yes Candida guilliermondii ATCC 6260   2 1
No Yes Hyphopichia burtonii NRRL Y-1933 v1.0   2 1
No Yes Debaromyces hansenii   2 1
No Yes Wickerhamomyces anomalus   2 1
No Yes Pichia pastoris GS115   2 1
No Yes Yarrowia lipolytica CLIB122   1 1
No Yes Candida lusitaniae ATCC 42720   2 1
No Yes Metschnikowia bicuspidata NRRL YB-4993 v1.0   2 1
No Yes Vanderwaltozyma polyspora DSM 70294   2 1
No Yes Candida glabrata CBS138   2 1
No Yes Kluyveromyces thermotolerans CBS 6340   2 1
No Yes Lachancea kluyveri   2 1
No Yes Kluyveromyces waltii   1 1
No Yes Ashbya gossypii ATCC 10895   1 1
No Yes Zygosaccharomyces rouxii   1 1
No Yes Saccharomyces mikatae MIT   1 1
No Yes Saccharomyces paradoxus MIT   1 1
No Yes Saccharomyces cerevisiae 76 Baker's yeast 1 1
No Yes Saccharomyces bayanus MIT   1 1
No Yes Kluyveromyces lactis   2 1
No Yes Catenaria anguillulae PL171 v1.0   2 1
No Yes Allomyces macrogynus ATCC 38327   1 1
No Yes Spizellomyces punctatus DAOM BR117   2 2
No Yes Dictyostelium discoideum   2 2
No Yes Dictyostelium purpureum   1 1
No Yes Eucalyptus grandis v201 Rose gum 2 2
No Yes Theobroma cacao B97-61/B2 v1 Cacao 1 1
No Yes Gossypium raimondii v221   3 3
No Yes Citrus clementina v165   2 1
No Yes Citrus sinensis v154 Sweet orange 7 6
No Yes Thellungiella halophila v173   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 1 1
No Yes Capsella rubella v183   1 1
No Yes Arabidopsis lyrata Lyrate rockcress 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes Medicago truncatula Barrel medic 1 1
No Yes Phaseolus vulgaris v186 French bean 1 1
No Yes Glycine max v109 Soybean 2 2
No Yes Cucumis sativus v122 Cucumber 1 1
No Yes Fragaria vesca Wild strawberry 1 1
No Yes Malus domestica v196 Apple 1 1
No Yes Prunus persica v139 Peach 1 1
No Yes Linum usitatissimum v200 Flax 2 2
No Yes Manihot esculenta v147 Cassava 2 2
No Yes Populus trichocarpa v156 Black cottonwood 1 1
No Yes Vitis vinifera Wine grape 1 1
No Yes Mimulus guttatus v140 Spotted monkey flower 1 1
No Yes Solanum lycopersicum v.2.3 Tomato 1 1
No Yes Solanum tuberosum Potato 2 2
No Yes Aquilegia coerulea v195   2 1
No Yes Triticum aestivum 22 Bread wheat 3 3
No Yes Brachypodium distachyon Stiff brome 4 4
No Yes Oryza barthii 22 African wild rice 1 1
No Yes Oryza glumaepatula 22   2 2
No Yes Oryza glaberrima African rice 1 1
No Yes Oryza punctata 22   1 1
No Yes Oryza nivara 22   2 2
No Yes Oryza brachyantha 22 Malo sina 1 1
No Yes Oryza sativa ssp. japonica 5.0 Japanese rice 2 2
No Yes Oryza sativa v193 Rice 2 2
No Yes Panicum virgatum v202 Switchgrass 2 2
No Yes Setaria italica v164 Foxtail millet 3 3
No Yes Zea mays subsp. mays Maize 2 2
No Yes Zea mays v181 Maize 2 2
No Yes Sorghum bicolor Sorghum 1 1
No Yes Amborella trichopoda 22   1 1
No Yes Physcomitrella patens   1 1
No Yes Coccomyxa subellipsoidea sp. C-169 v2   1 1
No Yes Asterochloris sp. Cgr/DA1pho v1.0   1 1
No Yes Chlorella vulgaris   1 1
No Yes Chlamydomonas reinhardtii 4.0   1 1
No Yes Pythium iwayamai DAOM BR242034 22   1 1
No Yes Pythium arrhenomanes ATCC 12531 22   1 1
No Yes Pythium ultimum v1.7-2   1 1
No Yes Pythium aphanidermatum DAOM BR444 22   1 1
No Yes Pythium irregulare DAOM BR486 22   1 1
No Yes Pythium vexans DAOM BR484 22   1 1
No Yes Phytophthora ramorum 1.1 Sudden oak death agent 1 1
No Yes Phytophthora sojae 1.1   1 1
No Yes Phytophthora infestans T30-4   1 1
No Yes Phytophthora capsici   1 1
No Yes Hyaloperonospora arabidopsidis 22   2 2
No Yes Perkinsus marinus ATCC 50983   1 1
No Yes Paramecium tetraurelia   2 2
No Yes Tetrahymena thermophila SB210 1   1 1
No Yes Ichthyophthirius multifiliis strain G5   1 1
No Yes Conexibacter woesei DSM 14684   3 3
No Yes Ilumatobacter coccineus   2 2
No Yes Acidimicrobium ferrooxidans DSM 10331   1 1
No Yes Thermobispora bispora DSM 43833   4 3
No Yes Nakamurella multipartita DSM 44233   1 1
No Yes Modestobacter marinus   2 2
No Yes Blastococcus saxobsidens DD2   3 3
No Yes Geodermatophilus obscurus DSM 43160   1 1
No Yes Catenulispora acidiphila DSM 44928   3 3
No Yes Stackebrandtia nassauensis DSM 44728   1 1
No Yes Frankia sp. EAN1pec   3 2
No Yes Frankia alni ACN14a   1 1
No Yes Thermobifida fusca YX   1 1
No Yes Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111   1 1
No Yes Thermomonospora curvata DSM 43183   2 2
No Yes Streptosporangium roseum DSM 43021   1 1
No Yes Kitasatospora setae KM-6054   3 3
No Yes Streptomyces coelicolor A3(2)   2 2
No Yes Streptomyces sp. PAMC26508   2 2
No Yes Streptomyces flavogriseus ATCC 33331   2 2
No Yes Streptomyces sp. SirexAA-E   1 1
No Yes Streptomyces griseus subsp. griseus NBRC 13350   2 2
No Yes Streptomyces bingchenggensis BCW-1   1 1
No Yes Streptomyces violaceusniger Tu 4113   3 3
No Yes Streptomyces avermitilis MA-4680   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces scabiei 87.22   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis 5008   4 4
No Yes Actinosynnema mirum DSM 43827   1 1
No Yes Saccharomonospora viridis DSM 43017   1 1
No Yes Pseudonocardia dioxanivorans CB1190   2 2
No Yes Saccharopolyspora erythraea NRRL 2338   1 1
No Yes Amycolatopsis mediterranei U32   2 2
No Yes Kribbella flavida DSM 17836   1 1
No Yes Nocardioides sp. JS614   2 2
No Yes Salinispora arenicola CNS-205   1 1
No Yes Salinispora tropica CNB-440   2 2
No Yes Verrucosispora maris AB-18-032   2 2
No Yes Micromonospora sp. L5   1 1
No Yes Actinoplanes sp. N902-109   2 2
No Yes Actinoplanes sp. SE50/110   1 1
No Yes Actinoplanes missouriensis 431   1 1
No Yes Tsukamurella paurometabola DSM 20162   2 2
No Yes Gordonia sp. KTR9   5 4
No Yes Gordonia polyisoprenivorans VH2   2 2
No Yes Gordonia bronchialis DSM 43247   3 2
No Yes Rhodococcus jostii RHA1   9 8
No Yes Rhodococcus equi 103S   1 1
No Yes Rhodococcus opacus B4   8 7
No Yes Rhodococcus erythropolis PR4   7 6
No Yes Nocardia cyriacigeorgica GUH-2   2 2
No Yes Nocardia farcinica IFM 10152   1 1
No Yes Amycolicicoccus subflavus DQS3-9A1   4 3
No Yes Mycobacterium massiliense str. GO 06   2 2
No Yes Mycobacterium abscessus ATCC 19977   1 1
No Yes Mycobacterium sp. JLS   5 4
No Yes Mycobacterium intracellulare ATCC 13950   7 6
No Yes Mycobacterium avium 104   9 7
No Yes Mycobacterium vanbaalenii PYR-1   5 4
No Yes Mycobacterium canettii CIPT 140010059   3 2
No Yes Mycobacterium africanum GM041182   3 2
No Yes Mycobacterium tuberculosis KZN 1435   3 2
No Yes Mycobacterium tuberculosis   3 2
No Yes Mycobacterium bovis BCG str. Pasteur 1173P2   3 2
No Yes Mycobacterium rhodesiae NBB3   4 3
No Yes Mycobacterium ulcerans Agy99   3 2
No Yes Mycobacterium gilvum PYR-GCK   4 3
No Yes Mycobacterium chubuense NBB4   4 3
No Yes Mycobacterium marinum M   3 2
No Yes Mycobacterium smegmatis str. MC2 155   4 3
No Yes Mycobacterium leprae Br4923   2 1
No Yes Corynebacterium glutamicum R   1 1
No Yes Microbacterium testaceum StLB037   1 1
No Yes Intrasporangium calvum DSM 43043   1 1
No Yes Cellulomonas flavigena DSM 20109   1 1
No Yes Cellulomonas fimi ATCC 484   1 1
No Yes Arthrobacter aurescens TC1   1 1
No Yes Rothia dentocariosa ATCC 17931   1 1
No Yes Arthrobacter sp. Rue61a   1 1
No Yes Arthrobacter sp. FB24   1 1
No Yes Sphaerobacter thermophilus DSM 20745   1 1
No Yes Herpetosiphon aurantiacus DSM 785   1 1
No Yes Deinococcus deserti VCD115   1 1
No Yes Deinococcus maricopensis DSM 21211   1 1
No Yes Deinococcus geothermalis DSM 11300   1 1
No Yes Deinococcus radiodurans R1   1 1
No Yes Kyrpidia tusciae DSM 2912   1 1
No Yes Belliella baltica DSM 15883   1 1
No Yes Cyclobacterium marinum DSM 745   1 1
No Yes Marivirga tractuosa DSM 4126   1 1
No Yes Fibrella aestuarina   1 1
No Yes Spirosoma linguale DSM 74   1 1
No Yes Runella slithyformis DSM 19594   1 1
No Yes Paludibacter propionicigenes WB4   1 1
No Yes Prevotella melaninogenica ATCC 25845   1 1
No Yes Prevotella intermedia 17   1 1
No Yes Prevotella denticola F0289   1 1
No Yes Prevotella ruminicola 23   1 1
No Yes Bacteroides salanitronis DSM 18170   1 1
No Yes Bacteroides helcogenes P 36-108   1 1
No Yes Bacteroides vulgatus ATCC 8482   1 1
No Yes Pedobacter saltans DSM 12145   1 1
No Yes Maribacter sp. HTCC2170   1 1
No Yes Polaribacter sp. MED152   1 1
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. L550   1 1
No Yes Leptospira interrogans serovar Lai str. IPAV   1 1
No Yes Candidatus Chloracidobacterium thermophilum B   1 1
No Yes Desulfarculus baarsii DSM 2075   1 1
No Yes Desulfatibacillum alkenivorans AK-01   1 1
No Yes Desulfobacterium autotrophicum HRM2   1 1
No Yes Geobacter sulfurreducens KN400   1 1
No Yes Geobacter metallireducens GS-15   1 1
No Yes Methylibium petroleiphilum PM1   1 1
No Yes Burkholderia phytofirmans PsJN   2 2
No Yes Burkholderia phymatum STM815   1 1
No Yes Burkholderia xenovorans LB400   1 1
No Yes Ralstonia eutropha JMP134   4 4
No Yes Cupriavidus taiwanensis LMG 19424   3 3
No Yes Cupriavidus metallidurans CH34   2 2
No Yes Cupriavidus necator N-1   3 3
No Yes Ralstonia eutropha H16   3 3
No Yes Ralstonia pickettii 12D   1 1
No Yes Ralstonia solanacearum CFBP2957   1 1
No Yes Burkholderia sp. RPE64   1 1
No Yes Burkholderia sp. CCGE1002   1 1
No Yes Burkholderia thailandensis E264   1 1
No Yes Burkholderia pseudomallei 1106a   1 1
No Yes Burkholderia mallei SAVP1   1 1
No Yes Burkholderia ambifaria AMMD   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia vietnamiensis G4   1 1
No Yes Burkholderia gladioli BSR3   1 1
No Yes Burkholderia glumae BGR1   1 1
No Yes Verminephrobacter eiseniae EF01-2   1 1
No Yes Ramlibacter tataouinensis TTB310   1 1
No Yes Delftia sp. Cs1-4   1 1
No Yes Delftia acidovorans SPH-1   1 1
No Yes Polaromonas sp. JS666   1 1
No Yes Polaromonas naphthalenivorans CJ2   1 1
No Yes Variovorax paradoxus S110   1 1
No Yes Rhodoferax ferrireducens T118   1 1
No Yes Acidovorax ebreus TPSY   1 1
No Yes Acidovorax sp. KKS102   1 1
No Yes Acidovorax sp. JS42   1 1
No Yes Acidovorax citrulli AAC00-1   1 1
No Yes Acidovorax avenae subsp. avenae ATCC 19860   1 1
No Yes Comamonas testosteroni CNB-2   2 2
No Yes Herminiimonas arsenicoxydans   1 1
No Yes Janthinobacterium sp. Marseille   1 1
No Yes Herbaspirillum seropedicae SmR1   1 1
No Yes Pusillimonas sp. T7-7   1 1
No Yes Advenella kashmirensis WT001   2 2
No Yes Bordetella pertussis Tohama I   1 1
No Yes Bordetella parapertussis 12822   1 1
No Yes Bordetella bronchiseptica RB50   2 2
No Yes Achromobacter xylosoxidans A8   2 2
No Yes Brevundimonas subvibrioides ATCC 15264   1 1
No Yes Caulobacter sp. K31   1 1
No Yes Caulobacter crescentus NA1000   1 1
No Yes Caulobacter segnis ATCC 21756   1 1
No Yes Phenylobacterium zucineum HLK1   2 2
No Yes Erythrobacter litoralis HTCC2594   1 1
No Yes Sphingopyxis alaskensis RB2256   1 1
No Yes Novosphingobium sp. PP1Y   1 1
No Yes Novosphingobium aromaticivorans DSM 12444   2 2
No Yes Sphingobium japonicum UT26S   1 1
No Yes Sphingobium chlorophenolicum L-1   2 2
No Yes Sphingomonas sp. MM-1   2 2
No Yes Sphingomonas wittichii RW1   1 1
No Yes Maricaulis maris MCS10   1 1
No Yes Hyphomonas neptunium ATCC 15444   1 1
No Yes Tistrella mobilis KA081020-065   2 2
No Yes Rhodospirillum centenum SW   1 1
No Yes Azospirillum sp. B510   1 1
No Yes Acidiphilium multivorum AIU301   1 1
No Yes Acidiphilium cryptum JF-5   1 1
No Yes Methylobacterium sp. 4-46   1 1
No Yes Methylobacterium nodulans ORS 2060   1 1
No Yes Parvibaculum lavamentivorans DS-1   2 2
No Yes Ochrobactrum anthropi ATCC 49188   1 1
No Yes Brucella microti CCM 4915   1 1
No Yes Brucella pinnipedialis B2/94   1 1
No Yes Brucella canis ATCC 23365   1 1
No Yes Brucella suis ATCC 23445   1 1
No Yes Brucella melitensis ATCC 23457   1 1
No Yes Brucella ovis ATCC 25840   1 1
No Yes Brucella abortus S19   1 1
No Yes Sinorhizobium fredii NGR234   1 1
No Yes Sinorhizobium medicae WSM419   1 1
No Yes Sinorhizobium meliloti AK83   2 2
No Yes Rhizobium etli CIAT 652   1 1
No Yes Rhizobium leguminosarum bv. viciae 3841   2 2
No Yes Agrobacterium vitis S4   1 1
No Yes Mesorhizobium sp. BNC1   1 1
No Yes Mesorhizobium opportunistum WSM2075   2 2
No Yes Mesorhizobium ciceri biovar biserrulae WSM1271   2 2
No Yes Mesorhizobium loti MAFF303099   2 2
No Yes Rhodopseudomonas palustris BisA53   1 1
No Yes Nitrobacter winogradskyi Nb-255   1 1
No Yes Bradyrhizobium japonicum USDA 110   3 3
No Yes Bradyrhizobium sp. ORS 278   2 2
No Yes Bartonella tribocorum CIP 105476   1 1
No Yes Bartonella clarridgeiae 73   1 1
No Yes Bartonella henselae str. Houston-1   1 1
No Yes Bartonella grahamii as4aup   1 1
No Yes Bartonella quintana str. Toulouse   1 1
No Yes Bartonella bacilliformis KC583   1 1
No Yes Aeromonas veronii B565   1 1
No Yes Aeromonas salmonicida subsp. salmonicida A449   1 1
No Yes Aeromonas hydrophila subsp. hydrophila ATCC 7966   2 2
No Yes Vibrio fischeri MJ11   1 1
No Yes Vibrio harveyi ATCC BAA-1116   1 1
No Yes Vibrio parahaemolyticus RIMD 2210633   1 1
No Yes Photobacterium profundum SS9   1 1
No Yes Psychromonas ingrahamii 37   1 1
No Yes Psychromonas sp. CNPT3   1 1
No Yes Ferrimonas balearica DSM 9799   1 1
No Yes Shewanella halifaxensis HAW-EB4   2 2
No Yes Shewanella pealeana ATCC 700345   2 2
No Yes Colwellia psychrerythraea 34H   1 1
No Yes Pseudoalteromonas haloplanktis TAC125   1 1
No Yes Glaciecola sp. 4H-3-7+YE-5   1 1
No Yes Alcanivorax borkumensis SK2   2 2
No Yes gamma proteobacterium HdN1   3 3
No Yes Pseudomonas sp. TKP   1 1
No Yes Pseudomonas sp. UW4   2 2
No Yes Pseudomonas brassicacearum subsp. brassicacearum NFM421   1 1
No Yes Pseudomonas entomophila L48   1 1
No Yes Pseudomonas syringae pv. tomato str. DC3000   1 1
No Yes Pseudomonas stutzeri A1501   1 1
No Yes Pseudomonas putida F1   1 1
No Yes Pseudomonas protegens Pf-5   1 1
No Yes Pseudomonas fluorescens SBW25   1 1
No Yes Pseudomonas mendocina ymp   1 1
No Yes Pseudomonas aeruginosa UCBPP-PA14   1 1
No Yes Pseudomonas sp. VLB120   1 1
No Yes Acinetobacter calcoaceticus PHEA-2   1 1
No Yes Cycloclasticus sp. P1   1 1
No Yes Ferroglobus placidus DSM 10642   2 2
No Yes Archaeoglobus fulgidus DSM 4304   3 3
No Yes Xenopus (Silurana) tropicalis v7.1 (annotation v7.2) Tropical clawed frog 5 3
No Yes Drosophila melanogaster FlyBase 5.12 (FlyBase) Fruit fly 2 1
No Yes Anopheles gambiae VectorBase AgamP3.6 (VectorBase) African malaria mosquito 2 1
No Yes Ascaris suum Victoria/Ghent Pig roundworm 2 1
No Yes Caenorhabditis elegans WormBase WS218 (WormBase) Roundworm 2 1
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Paracoccidioides brasiliensis Pb01   1 1
No Yes Paracoccidioides brasiliensis Pb03   1 1
No Yes Coccidioides posadasii str. Silveira   1 1
No Yes Coccidioides immitis RMSCC 3703   1 1
No Yes Coccidioides immitis RMSCC 2394   1 1
No Yes Coccidioides immitis H538.4   1 1
No Yes Ajellomyces dermatitidis ER-3   1 1
No Yes Histoplasma capsulatum H143   1 1
No Yes Histoplasma capsulatum H88   2 1
No Yes Histoplasma capsulatum G186AR   2 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Candida albicans WO-1   2 1
No Yes Saccharomyces cerevisiae UC5   1 1
No Yes Saccharomyces cerevisiae PW5   1 1
No Yes Saccharomyces cerevisiae FL100   1 1
No Yes Saccharomyces cerevisiae CBS7960   1 1
No Yes Saccharomyces cerevisiae YJM269   1 1
No Yes Saccharomyces cerevisiae T7   1 1
No Yes Saccharomyces cerevisiae FostersB   1 1
No Yes Saccharomyces cerevisiae FostersO   1 1
No Yes Saccharomyces cerevisiae VL3   1 1
No Yes Saccharomyces cerevisiae Vin13   1 1
No Yes Saccharomyces cerevisiae LalvinQA23   1 1
No Yes Saccharomyces cerevisiae AWRI796   1 1
No Yes Saccharomyces cerevisiae Sigma1278b   1 1
No Yes Saccharomyces cerevisiae W303   1 1
No Yes Saccharomyces cerevisiae JAY291   1 1
No Yes Saccharomyces cerevisiae AWRI1631   1 1
No Yes Saccharomyces cerevisiae YPS163   1 1
No Yes Saccharomyces cerevisiae CLIB215   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae YJM789   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae RM11-1a   1 1
No Yes Saccharomyces cerevisiae SGD (SGD) Baker's yeast 1 1
No Yes Batrachochytrium dendrobatidis JEL423   1 1
No Yes Batrachochytrium dendrobatidis JAM81   1 1
No Yes Theobroma cacao Matina 1-6 v0.9 Cacao 1 1
No Yes Oryza sativa ssp. Indica (Subspecies) Long-grained rice 1 1
No Yes Frankia sp. EuI1c   3 2
No Yes Nocardiopsis alba ATCC BAA-2165   1 1
No Yes Streptomyces albus J1074   2 2
No Yes Streptomyces rapamycinicus NRRL 5491   3 3
No Yes Streptomyces davawensis JCM 4913   2 2
No Yes Streptomyces fulvissimus DSM 40593   2 2
No Yes Streptomyces venezuelae ATCC 10712   2 2
No Yes Streptomyces collinus Tu 365   1 1
No Yes Streptomyces cattleya NRRL 8057 = DSM 46488   2 2
No Yes Streptomyces hygroscopicus subsp. jinggangensis TL01   4 4
No Yes Saccharothrix espanaensis DSM 44229   1 1
No Yes Amycolatopsis mediterranei RB   2 2
No Yes Amycolatopsis mediterranei S699   2 2
No Yes Amycolatopsis mediterranei S699   2 2
No Yes Amycolatopsis orientalis HCCB10007   1 1
No Yes Rhodococcus pyridinivorans SB3094   3 2
No Yes Rhodococcus erythropolis CCM2595   7 6
No Yes Nocardia brasiliensis ATCC 700358   1 1
No Yes Mycobacterium sp. MOTT36Y   6 5
No Yes Mycobacterium sp. JDM601   4 3
No Yes Mycobacterium abscessus subsp. bolletii 50594   2 2
No Yes Mycobacterium liflandii 128FXT   3 2
No Yes Mycobacterium sp. KMS   4 3
No Yes Mycobacterium sp. MCS   4 3
No Yes Mycobacterium yongonense 05-1390   6 5
No Yes Mycobacterium intracellulare MOTT-64   10 8
No Yes Mycobacterium indicus pranii MTCC 9506   7 6
No Yes Mycobacterium intracellulare MOTT-02   7 6
No Yes Mycobacterium avium subsp. paratuberculosis MAP4   5 4
No Yes Mycobacterium avium subsp. paratuberculosis K-10   5 4
No Yes Mycobacterium canettii CIPT 140070017   3 2
No Yes Mycobacterium canettii CIPT 140060008   3 2
No Yes Mycobacterium canettii CIPT 140070008   3 2
No Yes Mycobacterium canettii CIPT 140070010   3 2
No Yes Mycobacterium tuberculosis EAI5/NITR206   3 2
No Yes Mycobacterium tuberculosis EAI5   3 2
No Yes Mycobacterium tuberculosis CAS/NITR204   3 2
No Yes Mycobacterium tuberculosis str. Beijing/NITR203   3 2
No Yes Mycobacterium tuberculosis UT205   3 2
No Yes Mycobacterium tuberculosis RGTB423   2 2
No Yes Mycobacterium tuberculosis RGTB327   3 2
No Yes Mycobacterium tuberculosis CTRI-2   3 2
No Yes Mycobacterium tuberculosis str. Erdman = ATCC 35801   3 2
No Yes Mycobacterium tuberculosis KZN 605   3 2
No Yes Mycobacterium tuberculosis KZN 4207   3 2
No Yes Mycobacterium tuberculosis CCDC5180   3 2
No Yes Mycobacterium tuberculosis CCDC5079   3 2
No Yes Mycobacterium tuberculosis CCDC5079   3 2
No Yes Mycobacterium tuberculosis H37Ra   3 2
No Yes Mycobacterium tuberculosis str. Haarlem/NITR202   1 1
No Yes Mycobacterium tuberculosis str. Haarlem   3 2
No Yes Mycobacterium tuberculosis F11   3 2
No Yes Mycobacterium tuberculosis H37Rv   3 2
No Yes Mycobacterium tuberculosis CDC1551   3 2
No Yes Mycobacterium bovis AF2122/97   3 2
No Yes Mycobacterium bovis BCG str. Korea 1168P   3 2
No Yes Mycobacterium bovis BCG str. Mexico   3 2
No Yes Mycobacterium bovis BCG str. Tokyo 172   3 2
No Yes Mycobacterium gilvum Spyr1   4 3
No Yes Mycobacterium smegmatis str. MC2 155   4 3
No Yes Mycobacterium leprae TN   2 1
No Yes Mycobacterium kansasii ATCC 12478   4 3
No Yes Corynebacterium glutamicum MB001   1 1
No Yes Corynebacterium glutamicum SCgG2   2 2
No Yes Corynebacterium glutamicum SCgG1   2 2
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Corynebacterium glutamicum ATCC 13032   1 1
No Yes Deinococcus peraridilitoris DSM 19664   1 1
No Yes Echinicola vietnamensis DSM 17526   1 1
No Yes Emticicia oligotrophica DSM 17448   1 1
No Yes Prevotella sp. oral taxon 299 str. F0039   1 1
No Yes Prevotella dentalis DSM 3688   1 1
No Yes Leptospira borgpetersenii serovar Hardjo-bovis str. JB197   1 1
No Yes Leptospira interrogans serovar Lai str. 56601   1 1
No Yes Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   1 1
No Yes Geobacter sulfurreducens PCA   1 1
No Yes Burkholderia phenoliruptrix BR3459a   1 1
No Yes Ralstonia pickettii 12J   1 1
No Yes Ralstonia solanacearum FQY_4   1 1
No Yes Ralstonia solanacearum Po82   1 1
No Yes Ralstonia solanacearum PSI07   1 1
No Yes Ralstonia solanacearum CMR15   1 1
No Yes Ralstonia solanacearum GMI1000   1 1
No Yes Burkholderia sp. CCGE1003   2 2
No Yes Burkholderia sp. CCGE1001   2 2
No Yes Burkholderia sp. KJ006   1 1
No Yes Burkholderia thailandensis MSMB121   1 1
No Yes Burkholderia pseudomallei MSHR305   1 1
No Yes Burkholderia pseudomallei NCTC 13179   1 1
No Yes Burkholderia pseudomallei BPC006   1 1
No Yes Burkholderia pseudomallei 1026b   1 1
No Yes Burkholderia pseudomallei MSHR346   1 1
No Yes Burkholderia pseudomallei 668   1 1
No Yes Burkholderia pseudomallei 1710b   1 1
No Yes Burkholderia pseudomallei K96243   1 1
No Yes Burkholderia mallei NCTC 10229   1 1
No Yes Burkholderia mallei NCTC 10247   1 1
No Yes Burkholderia mallei ATCC 23344   1 1
No Yes Burkholderia lata   3 3
No Yes Burkholderia ambifaria MC40-6   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Burkholderia cenocepacia J2315   2 2
No Yes Burkholderia multivorans ATCC 17616   1 1
No Yes Burkholderia cepacia GG4   2 2
No Yes Variovorax paradoxus B4   1 1
No Yes Variovorax paradoxus EPS   1 1
No Yes Bordetella pertussis CS   1 1
No Yes Bordetella parapertussis 18323   1 1
No Yes Bordetella parapertussis Bpp5   2 2
No Yes Bordetella bronchiseptica MO149   2 2
No Yes Bordetella bronchiseptica 253   2 2
No Yes Caulobacter crescentus CB15   1 1
No Yes Brucella ceti TE10759-12   1 1
No Yes Brucella ceti TE28753-12   1 1
No Yes Brucella canis HSK A52141   1 1
No Yes Brucella suis VBI22   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella suis 1330   1 1
No Yes Brucella melitensis NI   1 1
No Yes Brucella melitensis M5-90   1 1
No Yes Brucella melitensis M28   1 1
No Yes Brucella melitensis bv. 1 str. 16M   1 1
No Yes Brucella abortus A13334   1 1
No Yes Brucella melitensis biovar Abortus 2308   1 1
No Yes Brucella abortus bv. 1 str. 9-941   1 1
No Yes Sinorhizobium fredii USDA 257   1 1
No Yes Sinorhizobium fredii HH103   1 1
No Yes Sinorhizobium meliloti 2011   1 1
No Yes Sinorhizobium meliloti GR4   1 1
No Yes Sinorhizobium meliloti Rm41   1 1
No Yes Sinorhizobium meliloti SM11   2 2
No Yes Sinorhizobium meliloti BL225C   2 2
No Yes Sinorhizobium meliloti 1021   2 2
No Yes Rhizobium etli CFN 42   1 1
No Yes Rhizobium etli bv. mimosae str. Mim1   1 1
No Yes Rhizobium tropici CIAT 899   1 1
No Yes Rhizobium leguminosarum bv. trifolii WSM2304   2 2
No Yes Rhizobium leguminosarum bv. trifolii WSM1325   2 2
No Yes Mesorhizobium australicum WSM2073   2 2
No Yes Rhodopseudomonas palustris DX-1   1 1
No Yes Rhodopseudomonas palustris TIE-1   2 2
No Yes Rhodopseudomonas palustris HaA2   1 1
No Yes Rhodopseudomonas palustris BisB5   2 2
No Yes Rhodopseudomonas palustris BisB18   1 1
No Yes Rhodopseudomonas palustris CGA009   2 2
No Yes Bradyrhizobium sp. S23321   2 2
No Yes Bradyrhizobium sp. BTAi1   2 2
No Yes Bradyrhizobium oligotrophicum S58   3 3
No Yes Bradyrhizobium japonicum USDA 6   3 3
No Yes Bartonella australis Aust/NH1   1 1
No Yes Bartonella vinsonii subsp. berkhoffii str. Winnie   1 1
No Yes Bartonella quintana RM-11   1 1
No Yes Simiduia agarivorans SA1 = DSM 21679   1 1
No Yes Aeromonas hydrophila ML09-119   2 2
No Yes Vibrio fischeri ES114   1 1
No Yes Vibrio sp. EJY3   1 1
No Yes Vibrio parahaemolyticus BB22OP   1 1
No Yes Vibrio cholerae LMA3984-4   1 1
No Yes Alcanivorax dieselolei B5   1 1
No Yes Pseudomonas denitrificans ATCC 13867   1 1
No Yes Pseudomonas syringae pv. phaseolicola 1448A   1 1
No Yes Pseudomonas syringae pv. syringae B728a   1 1
No Yes Pseudomonas stutzeri CCUG 29243   1 1
No Yes Pseudomonas stutzeri DSM 10701   1 1
No Yes Pseudomonas stutzeri DSM 4166   1 1
No Yes Pseudomonas stutzeri RCH2   1 1
No Yes Pseudomonas stutzeri ATCC 17588 = LMG 11199   1 1
No Yes Pseudomonas monteilii SB3101   1 1
No Yes Pseudomonas monteilii SB3078   1 1
No Yes Pseudomonas putida H8234   2 2
No Yes Pseudomonas putida HB3267   1 1
No Yes Pseudomonas putida NBRC 14164   2 2
No Yes Pseudomonas putida DOT-T1E   1 1
No Yes Pseudomonas putida S16   1 1
No Yes Pseudomonas putida BIRD-1   1 1
No Yes Pseudomonas putida W619   1 1
No Yes Pseudomonas putida ND6   1 1
No Yes Pseudomonas putida KT2440   1 1
No Yes Pseudomonas putida GB-1   1 1
No Yes Pseudomonas protegens CHA0   1 1
No Yes Pseudomonas poae RE*1-1-14   1 1
No Yes Pseudomonas fluorescens F113   1 1
No Yes Pseudomonas fluorescens A506   1 1
No Yes Pseudomonas fluorescens R124   1 1
No Yes Pseudomonas fluorescens Pf0-1   1 1
No Yes Pseudomonas resinovorans NBRC 106553   3 3
No Yes Pseudomonas mendocina NK-01   1 1
No Yes Pseudomonas aeruginosa SCV20265   1 1
No Yes Pseudomonas aeruginosa MTB-1   1 1
No Yes Pseudomonas aeruginosa LES431   1 1
No Yes Pseudomonas aeruginosa RP73   1 1
No Yes Pseudomonas aeruginosa B136-33   1 1
No Yes Pseudomonas aeruginosa PA1R   1 1
No Yes Pseudomonas aeruginosa PA1   1 1
No Yes Pseudomonas aeruginosa DK2   1 1
No Yes Pseudomonas aeruginosa NCGM2.S1   1 1
No Yes Pseudomonas aeruginosa M18   1 1
No Yes Pseudomonas aeruginosa LESB58   1 1
No Yes Pseudomonas aeruginosa PA7   1 1
No Yes Pseudomonas aeruginosa PAO1   1 1
No Yes Acinetobacter genomosp. 13TU RUH2624   1 1
No Yes Acinetobacter sp. SH024   1 1
No Yes Acinetobacter calcoaceticus ruh2202   1 1
No Yes Acinetobacter baumannii ZW85-1   1 1
No Yes Acinetobacter baumannii BJAB0715   1 1
No Yes Acinetobacter baumannii D1279779   1 1
No Yes Acinetobacter baumannii ATCC 19606   1 1
No Yes Cycloclasticus zancles 7-ME   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 15 8
No Yes Homo sapiens (NCBI version) Human 6 3
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 2 1
No Yes Heliconius numata (Incomplete)   1 1
No Yes Loa loa v3.3 (Request) Eye worm 2 1
No Yes Wuchereria bancrofti v1.0 (Request) Agent of lymphatic filariasis 1 1
No Yes Brugia malayi v1.0 (Duplicate) Agent of lymphatic filariasis 2 1
No Yes Moniliophthora perniciosa FA553 (Genome survey)   1 1
No Yes Malus x domestica (Duplicate) Apple 1 1
No Yes Ricinus communis (Early assembly) Castor bean 1 1
No Yes Nicotiana benthamiana 0.4.4 (Early draft)   4 2
No Yes Solanum pimpinellifolium A-1.0 (Early draft) Currant tomato 1 1
No Yes Solanum lycopersicum v2.3 (Early assembly) Tomato 1 1
No Yes Mycobacterium tuberculosis H37Rv (Duplicate of ex)   3 2
No Yes Vibrio campbellii ATCC BAA-1116 (Duplicate of NC)   1 1
No Yes Homo sapiens 69_37 Human 2 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 2 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 3 2
No Yes Pongo abelii 69_2 Sumatran orangutan 2 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 2 1
No Yes Macaca mulatta 69_1 Rhesus monkey 2 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 2 1
No Yes Otolemur garnettii 69_3 Small-eared galago 2 1
No Yes Microcebus murinus 69_1 Gray mouse lemur 1 1
No Yes Rattus norvegicus 69_3.4 Norway rat 2 1
No Yes Mus musculus 69_38 House mouse 2 1
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 2 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 2 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 3 2
No Yes Oryctolagus cuniculus 69_2 Rabbit 2 1
No Yes Ochotona princeps 69 American pika 2 1
No Yes Tupaia belangeri 69 Northern tree shrew 1 1
No Yes Sus scrofa 69_10.2 Pig 1 1
No Yes Bos taurus 69_3.1 Cattle 2 1
No Yes Vicugna pacos 69_1 Alpaca 2 1
No Yes Tursiops truncatus 69_1 Bottlenose dolphin 2 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 2 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 2 1
No Yes Canis familiaris 69_3.1 Dog 2 1
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 2 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 2 1
No Yes Pteropus vampyrus 69_1 Large flying fox 2 1
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Erinaceus europaeus 69 Western European hedgehog 2 1
No Yes Procavia capensis 69_1 Cape rock hyrax 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 1 1
No Yes Echinops telfairi 69 Small Madagascar hedgehog 2 1
No Yes Dasypus novemcinctus 69_2 Nine-banded armadillo 1 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 2 1
No Yes Macropus eugenii 69_1.0 Tammar wallaby 2 1
No Yes Sarcophilus harrisii 69_7.0 Tasmanian devil 2 1
No Yes Monodelphis domestica 69_5 Gray short-tailed opossum 2 1
No Yes Ornithorhynchus anatinus 69_5 Platypus 2 1
No Yes Petromyzon marinus 69_7.0 Sea lamprey 2 1
No Yes Meleagris gallopavo 69_2 Turkey 1 1
No Yes Gallus gallus 69_2 Chicken 2 1
No Yes Taeniopygia guttata 69_3.2.4 Zebra finch 2 1
No Yes Pelodiscus sinensis 69_1.0 Chinese soft-shelled turtle 2 1
No Yes Anolis carolinensis 69_2.0 Green anole 2 1
No Yes Xenopus tropicalis 69_4.2 Tropical clawed frog 2 1
No Yes Latimeria chalumnae 69_1 Coelacanth 2 1
No Yes Gadus morhua 69_1 Atlantic cod 2 1
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 2 1
No Yes Takifugu rubripes 69_4 Torafugu 2 1
No Yes Gasterosteus aculeatus 69_1 Three-spined stickleback 2 1
No Yes Oryzias latipes 69_1 Japanese medaka 2 1
No Yes Xiphophorus maculatus 69_4.4.2 Southern platyfish 2 1
No Yes Oreochromis niloticus 69_1.0 Nile tilapia 2 1
No Yes Danio rerio 69_9 Zebrafish 2 1
No Yes Ciona savignyi 69_2.0 Pacific transparent sea squirt 2 1
No Yes Ciona intestinalis 69 Vase tunicate 2 1
No Yes Drosophila melanogaster 69_5 Fruit fly 2 1
No Yes Caenorhabditis elegans 69_215 Roundworm 2 1
No Yes Saccharomyces cerevisiae 69_4 Baker's yeast 1 1
No Yes Arabidopsis thaliana 10 Thale cress 1 1
No Yes 1_050719N (meta-genome)   1 1
No Yes 1_Upper_euphotic (meta-genome)   1 1
No Yes 2_Base_of_chrolophyll_max (meta-genome)   2 2
No Yes 3_Below_base_of_euphotic (meta-genome)   1 1
No Yes 4_050719Q (meta-genome)   2 2
No Yes 5_050719P (meta-genome)   1 1
No Yes 5_Below_upper_mesopelagic (meta-genome)   2 2
No Yes 7_Oxygen_minimum_layer (meta-genome)   1 1
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes Air microbial communities Singapore indoor air filters 1 (meta-genome)   5 5
No Yes Air microbial communities Singapore indoor air filters 2 (meta-genome)   2 2
No Yes Combined (meta-genome)   3 3
No Yes Cyphomyrmex longiscapus fungus garden (meta-genome)   2 2
No Yes Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)   1 1
No Yes Dump bottom (Dump bottom) (meta-genome)   17 16
No Yes Dump top (Dump top) (meta-genome)   7 7
No Yes Endophytic microbiome from Rice (meta-genome)   1 1
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)   3 3
No Yes Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)   2 2
No Yes Freshwater propionate enrichment of Brocadia fulgida (meta-genome)   2 2
No Yes Fungus garden combined (combined) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)   1 1
No Yes Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)   4 4
No Yes Guerrero Negro salt ponds hypersaline mat 10(Z) (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)   1 1
No Yes Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)   1 1
No Yes Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)   1 1
No Yes Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)   1 1
No Yes Marine anammox bioreactor enriched for Scalindua species (meta-genome)   1 1
No Yes Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)   11 11
No Yes Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)   2 2
No Yes Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)   3 3
No Yes Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)   1 1
No Yes Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)   3 3
No Yes NCBI 2017_08 genome   41701 34677
No Yes Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)   5 5
No Yes simLC - Simulated Low Complexity Metagenome (meta-genome)   6 6
No Yes simMC - Simulated Medium Complexity Metagenome (meta-genome)   4 4
No Yes Sludge/Australian, Phrap Assembly (meta-genome)   3 3
No Yes Soil microbial communities from Minnesota Farm (meta-genome)   1 1
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   4 4
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)   17 17
No Yes Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)   8 8
No Yes Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)   6 6
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)   5 5
No Yes Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)   11 11
No Yes STRING v9.0.5 (STRING)   478 389
No Yes Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)   5 5
No Yes Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample from switchgrass (Panicum virg (meta-genome)   1 1
No Yes Uniprot 2018_03 genome   10907 9754
No Yes Uranium Contaminated Groundwater FW106 (meta-genome)   1 1
No Yes Global Ocean Sampling Expedition (GOS)   353 353
No Yes NCBI plasmid sequences (Plasmids)   15 15
No Yes PDB chains (SCOP 1.75) (PDB)   14 9
No Yes Protein Data Bank (all PDB sequenc)   73 46
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   206 206
No Yes TargetDB (Targets)   28 19

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]