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  Home > Genomes > Positive stranded ssRNA viruses domains in all genomes


Positive stranded ssRNA viruses superfamily domain assignments
in
all genomes

Assignment details

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25 selected genomes have 41 significant domains in 41 proteins.

Showing genomes 1 to 25 of 152
  1 2 3 4 5 6 7   Next Last

Homo sapiens 76_38 has 5 significant domains in 5 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSP00000346372   0.00000000377   570-732   Tetraviridae-like VP  
ENSP00000351407   0.000000000107   570-734   Tetraviridae-like VP  
ENSP00000423851   0.000000000105   556-720   Tetraviridae-like VP  
ENSP00000427571   0.000000000104   555-719   Tetraviridae-like VP  
ENSP00000476404   2e-17   2515-2814   Tetraviridae-like VP  
 
Weak hits:
ENSP00000225983   0.0412   358-455   Comoviridae-like VP  
ENSP00000257626   0.0412   269-301   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSP00000264833   0.0365   208-368   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSP00000337290   0.0365   357-454   Comoviridae-like VP  
ENSP00000396576   0.000777   1548-1745   Tetraviridae-like VP  
ENSP00000401661   0.00697   28-126   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSP00000405014   0.00093   987-1184   Tetraviridae-like VP  
ENSP00000416934   0.000259   411-608   Tetraviridae-like VP  
ENSP00000422235   0.0736   7-55   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSP00000436793   0.000388   384-581   Tetraviridae-like VP  
ENSP00000446921   0.053   105-181   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSP00000450079   0.053   105-181   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSP00000464877   0.0212   130-291   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSP00000465227   0.00353   127-235   Comoviridae-like VP  
ENSP00000468004   0.0412   357-454   Comoviridae-like VP  

Pan troglodytes 76_2.1.4 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPTRP00000045337   0.00000000101   570-734   Tetraviridae-like VP  
 
Weak hits:
ENSPTRP00000015755   0.0365   357-454   Comoviridae-like VP  
ENSPTRP00000015756   0.0412   358-455   Comoviridae-like VP  
ENSPTRP00000017781   0.0365   208-368   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSPTRP00000036762   0.00388   927-1122   Tetraviridae-like VP  

Gorilla gorilla 76_3.1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSGGOP00000015019   0.000000000671   570-734   Tetraviridae-like VP  
ENSGGOP00000025461   0.000000000659   561-725   Tetraviridae-like VP  
 
Weak hits:
ENSGGOP00000005885   0.0353   206-366   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSGGOP00000010353   0.0365   358-455   Comoviridae-like VP  
ENSGGOP00000016757   0.00212   1538-1732   Tetraviridae-like VP  
ENSGGOP00000019129   0.0388   324-421   Comoviridae-like VP  
ENSGGOP00000026631   0.0647   244-326   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Pongo abelii 76_2 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPPYP00000001037   0.000000000483   570-734   Tetraviridae-like VP  
 
Weak hits:
ENSPPYP00000009379   0.04   346-443   Comoviridae-like VP  
ENSPPYP00000010697   0.0212   140-301   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSPPYP00000022085   0.00518   1513-1710   Tetraviridae-like VP  

Nomascus leucogenys 76_1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSNLEP00000012180   0.00000000105   627-791   Tetraviridae-like VP  
 
Weak hits:
ENSNLEP00000006711   0.0412   358-455   Comoviridae-like VP  
ENSNLEP00000014592   0.0353   207-367   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Papio anubis 76 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSPANP00000002143   0.0000000118   570-734   Tetraviridae-like VP  
 
Weak hits:
ENSPANP00000004896   0.0318   205-365   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSPANP00000017945   0.0318   208-368   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSPANP00000020771   0.0153   53-157   Comoviridae-like VP  

Macaca mulatta 76_1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMMUP00000000731   0.000000002   617-781   Tetraviridae-like VP  
ENSMMUP00000000732   0.00000000129   544-708   Tetraviridae-like VP  
 
Weak hits:
ENSMMUP00000008945   0.0412   357-454   Comoviridae-like VP  
ENSMMUP00000008946   0.0365   357-454   Comoviridae-like VP  
ENSMMUP00000021811   0.0318   208-368   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSMMUP00000028615   0.00224   1538-1757   Tetraviridae-like VP  
ENSMMUP00000028616   0.000153   1523-1732   Tetraviridae-like VP  
ENSMMUP00000038083   0.0871   273-346   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Callithrix jacchus 76_3.2.1 has 3 significant domains in 3 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCJAP00000012841   0.00000129   522-685   Tetraviridae-like VP  
ENSCJAP00000012876   0.000000000365   305-470   Tetraviridae-like VP  
ENSCJAP00000012901   0.000000000859   570-734   Tetraviridae-like VP  
 
Weak hits:
ENSCJAP00000011161   0.0365   227-387   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSCJAP00000011166   0.0365   208-368   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSCJAP00000043399   0.0942   139-220   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSCJAP00000050575   0.00412   52-181   Tetraviridae-like VP  

Otolemur garnettii 76_3 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOGAP00000004041   0.0000000577   571-736   Tetraviridae-like VP  
 
Weak hits:
ENSOGAP00000009331   0.0506   189-348   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSOGAP00000009396   0.0565   357-454   Comoviridae-like VP  

Rattus norvegicus 76_5.0 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSRNOP00000048259   0.000004   570-730   Tetraviridae-like VP  
ENSRNOP00000060764   0.00000494   585-746   Tetraviridae-like VP  
 
Weak hits:
ENSRNOP00000027829   0.0247   233-398   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Mus musculus 76_38 has 4 significant domains in 4 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMUSP00000015666   0.0000033   555-716   Tetraviridae-like VP  
ENSMUSP00000088313   0.00000341   560-721   Tetraviridae-like VP  
ENSMUSP00000099810   0.00000353   575-736   Tetraviridae-like VP  
ENSMUSP00000102779   0.0000153   560-705   Tetraviridae-like VP  
 
Weak hits:
ENSMUSP00000008999   0.0577   367-464   Comoviridae-like VP  
ENSMUSP00000034692   0.0212   203-368   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSMUSP00000074190   0.0636   49-117   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSMUSP00000102768   0.0565   348-445   Comoviridae-like VP  
ENSMUSP00000102769   0.0518   349-446   Comoviridae-like VP  
ENSMUSP00000102770   0.0577   349-446   Comoviridae-like VP  

Dipodomys ordii 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSDORP00000013278   0.00000153   515-684   Tetraviridae-like VP  
 
Weak hits:
ENSDORP00000006084   0.0165   188-353   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Ictidomys tridecemlineatus 76_2 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSTOP00000012440   0.00000000224   574-738   Tetraviridae-like VP  
 
Weak hits:
ENSSTOP00000002223   0.0621   9-63,113-127   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSSTOP00000004752   0.0294   187-347   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSSTOP00000016795   0.0565   352-449   Comoviridae-like VP  
ENSSTOP00000023494   0.0073   234-269   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Heterocephalus glaber v1.7-2 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
HGL_H00000351407   0.00000141   566-729   Tetraviridae-like VP  
 
Weak hits:
HGL_H00000264833   0.02   141-303   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Cavia porcellus 76_3 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCPOP00000013135   0.0000000118   566-729   Tetraviridae-like VP  
ENSCPOP00000016607   0.0000000118   570-733   Tetraviridae-like VP  
 
Weak hits:
ENSCPOP00000017511   0.0177   193-358   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Oryctolagus cuniculus 76_2 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOCUP00000011684   0.00000424   639-802   Tetraviridae-like VP  
 
Weak hits:
ENSOCUP00000004064   0.0141   141-306   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Ochotona princeps 76 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOPRP00000009500   0.00000483   616-792   Tetraviridae-like VP  

Tupaia belangeri 76 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSTBEP00000003940   0.0000388   26-155   Tetraviridae-like VP  
ENSTBEP00000004286   0.00000093   623-786   Tetraviridae-like VP  

Sus scrofa 76_10.2 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSSSCP00000007087   0.0000000706   557-726   Tetraviridae-like VP  
ENSSSCP00000029414   0.0000000718   566-735   Tetraviridae-like VP  
 
Weak hits:
ENSSSCP00000014531   0.033   189-354   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSSSCP00000015713   0.00306   4-63   Tetraviridae-like VP  
ENSSSCP00000025002   0.0259   12-45   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Bos taurus 76_3.1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSBTAP00000028023   0.0000000212   562-727   Tetraviridae-like VP  
 
Weak hits:
ENSBTAP00000009935   0.0177   203-368   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  
ENSBTAP00000024429   0.0177   111-200   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Ovis aries 76_3.1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSOARP00000022431   0.0000000577   570-735   Tetraviridae-like VP  
 
Weak hits:
ENSOARP00000016083   0.00765   1945-2102   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Vicugna pacos 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSVPAP00000005054   0.0000000259   591-790   Tetraviridae-like VP  

Mustela putorius furo 76_1.0 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSMPUP00000004332   0.000000553   499-664   Tetraviridae-like VP  
 
Weak hits:
ENSMPUP00000014436   0.0118   141-306   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Ailuropoda melanoleuca 76_1 has 1 significant domains in 1 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSAMEP00000001317   0.000000471   570-734   Tetraviridae-like VP  
 
Weak hits:
ENSAMEP00000012997   0.02   209-374   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

Canis familiaris 76_3.1 has 2 significant domains in 2 proteins.

     

Sequence ID   Evalue   Region   Family  
ENSCAFP00000018081   0.00000118   562-726   Tetraviridae-like VP  
ENSCAFP00000039580   0.00000129   572-736   Tetraviridae-like VP  
 
Weak hits:
ENSCAFP00000005492   0.0977   176-298   Tetraviridae-like VP  
ENSCAFP00000026532   0.02   192-357   Picornaviridae-like VP (VP1, VP2, VP3 and VP4)  

  1 2 3 4 5 6 7   Next Last
Showing genomes 1 to 25 of 152

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View all assignments containing a Positive stranded ssRNA viruses domain in each group of genomes.

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Select to display   Genome       Domains   Proteins
No Yes ALL   180590 180590
No Yes Homo sapiens 76_38 Human 5 5
No Yes Pan troglodytes 76_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 76_3.1 Western gorilla 2 2
No Yes Pongo abelii 76_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 76_1.0 Northern white-cheeked gibbon 1 1
No Yes Papio anubis 76 Olive baboon 1 1
No Yes Macaca mulatta 76_1 Rhesus monkey 2 2
No Yes Callithrix jacchus 76_3.2.1 White-tufted-ear marmoset 3 3
No Yes Otolemur garnettii 76_3 Small-eared galago 1 1
No Yes Rattus norvegicus 76_5.0 Norway rat 2 2
No Yes Mus musculus 76_38 House mouse 4 4
No Yes Dipodomys ordii 76_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 76_2 Thirteen-lined ground squirrel 1 1
No Yes Heterocephalus glaber v1.7-2 Naked mole-rat 1 1
No Yes Cavia porcellus 76_3 Domestic guinea pig 2 2
No Yes Oryctolagus cuniculus 76_2 Rabbit 1 1
No Yes Ochotona princeps 76 American pika 1 1
No Yes Tupaia belangeri 76 Northern tree shrew 2 2
No Yes Sus scrofa 76_10.2 Pig 2 2
No Yes Bos taurus 76_3.1 Cattle 1 1
No Yes Ovis aries 76_3.1 Sheep 1 1
No Yes Vicugna pacos 76_1 Alpaca 1 1
No Yes Mustela putorius furo 76_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 76_1 Giant panda 1 1
No Yes Canis familiaris 76_3.1 Dog 2 2
No Yes Felis catus 76_6.2 Domestic cat 1 1
No Yes Equus caballus 76_2 Horse 1 1
No Yes Myotis lucifugus 76_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 76_1 Large flying fox 1 1
No Yes Sorex araneus 76_1 European shrew 1 1
No Yes Loxodonta africana 76_3 African savanna elephant 1 1
No Yes Choloepus hoffmanni 76_1 Hoffmann's two-fingered sloth 1 1
No Yes Gallus gallus 76_4 Chicken 2 2
No Yes Tetraodon nigroviridis 76_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 76_4 Torafugu 2 2
No Yes Neurospora tetrasperma   1 1
No Yes Neurospora discreta FGSC 8579   1 1
No Yes Neurospora crassa OR74A   1 1
No Yes Aspergillus fumigatus Af293   1 1
No Yes Neosartorya fischeri NRRL 181   1 1
No Yes Schizosaccharomyces pombe Fission yeast 1 1
No Yes Thellungiella halophila v173   1 1
No Yes Brassica rapa Chiifu-401 1.2 Field mustard 2 2
No Yes Capsella rubella v183   3 3
No Yes Arabidopsis lyrata Lyrate rockcress 2 2
No Yes Arabidopsis thaliana 10 Thale cress 4 4
No Yes Cryptosporidium parvum Iowa II   1 1
No Yes Bacillus halodurans C-125   1 1
No Yes Bacillus cereus 03BB102   1 1
No Yes Bacillus anthracis str. A0248   1 1
No Yes Rhodopirellula baltica SH 1   2 2
No Yes Candidatus Solibacter usitatus Ellin6076   1 1
No Yes Desulfotalea psychrophila LSv54   1 1
No Yes Cupriavidus metallidurans CH34   1 1
No Yes Burkholderia cenocepacia HI2424   1 1
No Yes Xanthomonas axonopodis pv. citri str. 306   1 1
No Yes Xanthomonas oryzae pv. oryzae PXO99A   2 2
No Yes Xanthomonas campestris pv. campestris str. B100   1 1
No Yes Azotobacter vinelandii DJ   1 1
No Yes Cryptococcus neoformans var. grubii H99   1 1
No Yes Cryptococcus neoformans B-3501A   1 1
No Yes Cryptococcus neoformans JEC21   1 1
No Yes Aspergillus fumigatus A1163   1 1
No Yes Schizosaccharomyces pombe 972h-   1 1
No Yes Lactobacillus acidophilus La-14   1 1
No Yes Lactobacillus acidophilus NCFM   1 1
No Yes Bacillus toyonensis BCT-7112   1 1
No Yes Bacillus thuringiensis HD-771   1 1
No Yes Bacillus thuringiensis HD-789   1 1
No Yes Bacillus thuringiensis serovar konkukian str. 97-27   1 1
No Yes Bacillus cereus biovar anthracis str. CI   1 1
No Yes Bacillus cereus AH820   1 1
No Yes Bacillus cereus G9842   1 1
No Yes Bacillus cereus Q1   1 1
No Yes Bacillus cereus F837/76   1 1
No Yes Bacillus cereus E33L   1 1
No Yes Bacillus anthracis str. H9401   1 1
No Yes Bacillus anthracis str. CDC 684   1 1
No Yes Bacillus anthracis str. 'Ames Ancestor'   1 1
No Yes Bacillus anthracis str. Sterne   1 1
No Yes Bacillus anthracis str. Ames   1 1
No Yes Desulfovibrio vulgaris RCH1   1 1
No Yes Desulfovibrio vulgaris str. Hildenborough   1 1
No Yes Burkholderia cenocepacia MC0-3   1 1
No Yes Burkholderia cenocepacia AU 1054   1 1
No Yes Xanthomonas citri subsp. citri Aw12879   1 1
No Yes Xanthomonas campestris pv. vesicatoria str. 85-10   1 1
No Yes Xanthomonas axonopodis pv. citrumelo F1   1 1
No Yes Xanthomonas oryzae pv. oryzae MAFF 311018   2 2
No Yes Xanthomonas oryzae pv. oryzae KACC 10331   2 2
No Yes Xanthomonas campestris pv. raphani 756C   1 1
No Yes Xanthomonas campestris pv. campestris str. 8004   1 1
No Yes Xanthomonas campestris pv. campestris str. ATCC 33913   1 1
No Yes Escherichia coli str. 'clone D i2'   1 1
No Yes Escherichia coli str. 'clone D i14'   1 1
No Yes Escherichia coli ABU 83972   1 1
No Yes Escherichia coli IAI39   1 1
No Yes Escherichia coli SMS-3-5   1 1
No Yes Escherichia coli CFT073   1 1
No Yes Azotobacter vinelandii CA6   1 1
No Yes Azotobacter vinelandii CA   1 1
No Yes Homo sapiens 75_37 (old version GRC) Human 5 5
No Yes Homo sapiens (NCBI version) Human 3 3
No Yes Mus musculus 63_37 (longest transcript per gene) (Duplicate) House mouse 1 1
No Yes Homo sapiens 69_37 Human 1 1
No Yes Pan troglodytes 69_2.1.4 Chimpanzee 1 1
No Yes Gorilla gorilla 69_3.1 Western gorilla 1 1
No Yes Pongo abelii 69_2 Sumatran orangutan 1 1
No Yes Nomascus leucogenys 69_1.0 Northern white-cheeked gibbon 1 1
No Yes Macaca mulatta 69_1 Rhesus monkey 1 1
No Yes Callithrix jacchus 69_3.2.1 White-tufted-ear marmoset 1 1
No Yes Otolemur garnettii 69_3 Small-eared galago 1 1
No Yes Rattus norvegicus 69_3.4 Norway rat 1 1
No Yes Mus musculus 69_38 House mouse 1 1
No Yes Dipodomys ordii 69_1 Ord's kangaroo rat 1 1
No Yes Ictidomys tridecemlineatus 69_2 Thirteen-lined ground squirrel 1 1
No Yes Cavia porcellus 69_3 Domestic guinea pig 1 1
No Yes Oryctolagus cuniculus 69_2 Rabbit 1 1
No Yes Ochotona princeps 69 American pika 1 1
No Yes Tupaia belangeri 69 Northern tree shrew 2 2
No Yes Sus scrofa 69_10.2 Pig 1 1
No Yes Bos taurus 69_3.1 Cattle 1 1
No Yes Vicugna pacos 69_1 Alpaca 1 1
No Yes Mustela putorius furo 69_1.0 Domestic ferret 1 1
No Yes Ailuropoda melanoleuca 69_1 Giant panda 1 1
No Yes Canis familiaris 69_3.1 Dog 1 1
No Yes Felis catus 69 Domestic cat 1 1
No Yes Equus caballus 69_2 Horse 1 1
No Yes Myotis lucifugus 69_2.0 Little brown bat 1 1
No Yes Pteropus vampyrus 69_1 Large flying fox 1 1
No Yes Sorex araneus 69_1 European shrew 1 1
No Yes Loxodonta africana 69_3 African savanna elephant 1 1
No Yes Choloepus hoffmanni 69_1 Hoffmann's two-fingered sloth 1 1
No Yes Gallus gallus 69_2 Chicken 1 1
No Yes Tetraodon nigroviridis 69_8 Spotted green pufferfish 1 1
No Yes Takifugu rubripes 69_4 Torafugu 1 1
No Yes Arabidopsis thaliana 10 Thale cress 2 2
No Yes Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)   1 1
No Yes NCBI 2017_08 genome   3631 2665
No Yes Protozoadb 2010_08 (Protozoadb)   2 2
No Yes simHC - Simulated High Complexity Metagenome (meta-genome)   2 2
No Yes Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)   1 1
No Yes STRING v9.0.5 (STRING)   65 65
No Yes Uniprot 2018_03 genome   130788 118151
No Yes Global Ocean Sampling Expedition (GOS)   5 5
No Yes NCBI plasmid sequences (Plasmids)   4 4
No Yes NCBI viral sequences (Viral)   569 336
No Yes PDB chains (SCOP 1.75) (PDB)   163 157
No Yes Protein Data Bank (all PDB sequenc)   3183 2887
No Yes SCOP2 SCOPe CATH ECOD (all domain sequ)   6634 6441
No Yes TargetDB (Targets)   13 10
No Yes UniProt viral sequences (Viral)   35200 31852

Jump to [ Top of page · Assignment details · Add assignments from groups of genomes · Add assignments from individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.